View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10588_19 (Length: 325)
Name: NF10588_19
Description: NF10588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10588_19 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 9 - 290
Target Start/End: Complemental strand, 37155849 - 37155568
Alignment:
| Q |
9 |
agcagagaatggtacttagctgaatattgtcctgaaggtgttccgacctcagatcatcttaaactccggactgtttctcgttctcttgccgacgattcaa |
108 |
Q |
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| T |
37155849 |
agcagagaatggtacttagctgaatattgtcctgaaggtgttccgacctcagatcatcttaaactccggactgtttctcgttctcttgccgacgattcaa |
37155750 |
T |
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| Q |
109 |
tccctgataaccatctagccgtcgaaactctccttctctccgttgatccttatcttcgcagaacaatcaccggcaccctcgatggcctttatatgccaca |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37155749 |
tccctgataaccatctagccgtcgaaactctccttctctccgttgatccttatcttcgcagaacaatcaccggcaccatcgatggcctttatatgccaca |
37155650 |
T |
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| Q |
209 |
acatgagattaatcaggtacacacatttatgagttgtttgttacgtattagaaagaaataaaaagtgattctgatatttaat |
290 |
Q |
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| T |
37155649 |
acatgagattaatcaggtacatacatttatgagttgtttgttacgtattagaaagaaataaaaagtgattctgatatttaat |
37155568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 14 - 229
Target Start/End: Complemental strand, 37150718 - 37150503
Alignment:
| Q |
14 |
agaatggtacttagctgaatattgtcctgaaggtgttccgacctcagatcatcttaaactccggactgtttctcgttctcttgccgacgattcaatccct |
113 |
Q |
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|||||||||| |||||| ||| | |||||| |||||||| || || ||||||||||||||||| |||||||||| |||||||||| | || ||||||||| |
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| T |
37150718 |
agaatggtacgtagctgcatactctcctgagggtgttccaacgtcggatcatcttaaactccgcactgtttctctttctcttgcccatgaatcaatccct |
37150619 |
T |
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| Q |
114 |
gataaccatctagccgtcgaaactctccttctctccgttgatccttatcttcgcagaacaatcaccggcaccctcgatggcctttatatgccacaacatg |
213 |
Q |
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| T |
37150618 |
gatgaccatctaatcgtcgaaactctccttctctctgttgatccatatcttcgcggaacaatcaccggcacccttgaaggccttttcattccacaatatc |
37150519 |
T |
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| Q |
214 |
agattaatcaggtaca |
229 |
Q |
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| T |
37150518 |
aacttaatcaggtaca |
37150503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 9 - 166
Target Start/End: Complemental strand, 37161450 - 37161293
Alignment:
| Q |
9 |
agcagagaatggtacttagctgaatattgtcctgaaggtgttccgacctcagatcatcttaaactccggactgtttctcgttctcttgccgacgattcaa |
108 |
Q |
| |
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|||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||| ||||| |||| |||||||||||| ||||||| |
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| T |
37161450 |
agcagagaatggtacttagctggatattccactgaaggtgttccaacctcagatcatcttaaactccgtactgtgtctctttctcttgccgatgattcaa |
37161351 |
T |
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| Q |
109 |
tccctgataaccatctagccgtcgaaactctccttctctccgttgatccttatcttcg |
166 |
Q |
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|||||||||| |||||||| || |||||||||||||| |||||||| ||||||||||| |
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| T |
37161350 |
tccctgataatcatctagcagttgaaactctccttctttccgttgacccttatcttcg |
37161293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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