View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10588_2 (Length: 612)

Name: NF10588_2
Description: NF10588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10588_2
NF10588_2
[»] chr7 (23 HSPs)
chr7 (57-419)||(24044772-24045130)
chr7 (437-612)||(24045660-24045836)
chr7 (361-422)||(9107345-9107406)
chr7 (49-93)||(19426579-19426623)
chr7 (287-323)||(24044726-24044762)
chr7 (49-89)||(33223557-33223597)
chr7 (56-92)||(41080126-41080162)
chr7 (382-420)||(36449298-36449336)
chr7 (56-93)||(4971289-4971326)
chr7 (56-93)||(12141898-12141935)
chr7 (56-93)||(24700120-24700157)
chr7 (56-93)||(27164872-27164909)
chr7 (56-93)||(37856189-37856226)
chr7 (56-93)||(41985124-41985161)
chr7 (56-92)||(2347094-2347130)
chr7 (377-417)||(26386001-26386041)
chr7 (56-92)||(29162314-29162350)
chr7 (49-93)||(32919008-32919052)
chr7 (56-92)||(33050183-33050219)
chr7 (49-93)||(38096467-38096511)
chr7 (59-91)||(38218378-38218410)
chr7 (382-418)||(40292870-40292906)
chr7 (56-92)||(44175545-44175581)
[»] scaffold1613 (1 HSPs)
scaffold1613 (361-417)||(857-913)
[»] chr1 (24 HSPs)
chr1 (361-417)||(38544578-38544634)
chr1 (361-420)||(38548896-38548955)
chr1 (56-93)||(50797790-50797827)
chr1 (56-92)||(16836139-16836175)
chr1 (54-93)||(40612113-40612152)
chr1 (56-91)||(52714979-52715014)
chr1 (59-93)||(44517988-44518022)
chr1 (56-93)||(1690445-1690482)
chr1 (56-93)||(9011644-9011681)
chr1 (56-93)||(19442505-19442542)
chr1 (56-93)||(27687543-27687580)
chr1 (56-93)||(40596078-40596115)
chr1 (56-93)||(42256459-42256496)
chr1 (49-93)||(8934624-8934668)
chr1 (49-93)||(11812386-11812430)
chr1 (382-418)||(27905622-27905658)
chr1 (49-93)||(31427985-31428029)
chr1 (49-93)||(39669805-39669849)
chr1 (56-92)||(40238438-40238474)
chr1 (56-92)||(41507218-41507254)
chr1 (49-93)||(44672058-44672102)
chr1 (49-93)||(50226907-50226951)
chr1 (56-92)||(50528092-50528128)
chr1 (49-93)||(52669796-52669840)
[»] chr4 (27 HSPs)
chr4 (361-420)||(12296360-12296419)
chr4 (49-93)||(9162065-9162109)
chr4 (49-92)||(169530-169573)
chr4 (49-92)||(15596396-15596439)
chr4 (53-92)||(30042134-30042173)
chr4 (49-92)||(39010165-39010208)
chr4 (51-93)||(51717312-51717354)
chr4 (56-93)||(3222988-3223025)
chr4 (56-93)||(15638160-15638197)
chr4 (56-93)||(23094375-23094412)
chr4 (56-93)||(31221412-31221449)
chr4 (56-93)||(38864771-38864808)
chr4 (56-93)||(41262653-41262690)
chr4 (56-93)||(44368237-44368274)
chr4 (64-93)||(48783809-48783838)
chr4 (56-93)||(51359825-51359862)
chr4 (56-93)||(54036553-54036590)
chr4 (56-92)||(3078943-3078979)
chr4 (49-93)||(4896528-4896572)
chr4 (49-93)||(6290461-6290505)
chr4 (56-92)||(9032780-9032816)
chr4 (56-92)||(12387689-12387725)
chr4 (56-92)||(32365691-32365727)
chr4 (49-93)||(34116568-34116612)
chr4 (57-93)||(34259814-34259850)
chr4 (49-93)||(47998593-47998637)
chr4 (49-93)||(51296217-51296261)
[»] chr6 (11 HSPs)
chr6 (49-93)||(15722531-15722575)
chr6 (49-93)||(30714679-30714723)
chr6 (384-418)||(34101392-34101426)
chr6 (56-93)||(3180027-3180064)
chr6 (56-93)||(3339534-3339571)
chr6 (56-93)||(30945822-30945859)
chr6 (56-92)||(7611495-7611531)
chr6 (49-93)||(9954547-9954591)
chr6 (49-93)||(11785354-11785398)
chr6 (49-93)||(22492055-22492099)
chr6 (49-93)||(28965868-28965912)
[»] chr8 (20 HSPs)
chr8 (49-92)||(7596919-7596962)
chr8 (49-92)||(21273738-21273781)
chr8 (56-93)||(36064029-36064066)
chr8 (49-93)||(11223887-11223931)
chr8 (49-93)||(22852867-22852911)
chr8 (56-91)||(6806909-6806944)
chr8 (53-84)||(24319348-24319379)
chr8 (56-89)||(14710917-14710950)
chr8 (56-93)||(17775464-17775501)
chr8 (56-93)||(40413373-40413410)
chr8 (56-93)||(42443103-42443140)
chr8 (56-92)||(13884195-13884231)
chr8 (49-93)||(26294188-26294232)
chr8 (49-93)||(26307445-26307489)
chr8 (56-92)||(30112835-30112871)
chr8 (49-93)||(34970206-34970250)
chr8 (56-92)||(38844825-38844861)
chr8 (49-93)||(39021471-39021515)
chr8 (51-91)||(39719278-39719318)
chr8 (49-93)||(45101395-45101439)
[»] chr5 (17 HSPs)
chr5 (382-420)||(17853891-17853929)
chr5 (49-93)||(26660439-26660483)
chr5 (49-93)||(26932031-26932075)
chr5 (56-92)||(27440479-27440515)
chr5 (49-93)||(36713206-36713250)
chr5 (49-92)||(19127124-19127167)
chr5 (49-98)||(3771034-3771083)
chr5 (56-93)||(3960204-3960241)
chr5 (56-93)||(14914371-14914408)
chr5 (51-92)||(42699057-42699098)
chr5 (56-92)||(3109622-3109658)
chr5 (49-93)||(11768018-11768062)
chr5 (49-93)||(14323996-14324040)
chr5 (56-92)||(16143390-16143426)
chr5 (56-92)||(17063865-17063901)
chr5 (49-93)||(23991162-23991206)
chr5 (49-93)||(38500942-38500986)
[»] chr2 (13 HSPs)
chr2 (382-420)||(27879973-27880011)
chr2 (56-93)||(22353199-22353236)
chr2 (361-420)||(20572273-20572331)
chr2 (56-93)||(27307266-27307303)
chr2 (56-93)||(29795446-29795483)
chr2 (56-93)||(36909878-36909915)
chr2 (56-92)||(3196122-3196158)
chr2 (49-93)||(4738600-4738644)
chr2 (49-93)||(11229349-11229393)
chr2 (49-93)||(18373846-18373890)
chr2 (56-92)||(21805821-21805857)
chr2 (49-93)||(31296873-31296917)
chr2 (49-93)||(33296099-33296143)
[»] scaffold0592 (1 HSPs)
scaffold0592 (53-93)||(8339-8379)
[»] chr3 (22 HSPs)
chr3 (49-93)||(48945846-48945890)
chr3 (49-93)||(55344324-55344368)
chr3 (54-93)||(3958051-3958090)
chr3 (49-92)||(20380917-20380960)
chr3 (49-91)||(31206879-31206921)
chr3 (56-93)||(7249-7286)
chr3 (56-93)||(1765403-1765440)
chr3 (56-93)||(8254026-8254063)
chr3 (56-93)||(34021498-34021535)
chr3 (56-93)||(35074125-35074162)
chr3 (56-93)||(43169777-43169814)
chr3 (56-93)||(47683800-47683837)
chr3 (56-93)||(48405409-48405446)
chr3 (56-93)||(49196695-49196732)
chr3 (56-93)||(52454129-52454166)
chr3 (56-92)||(462436-462472)
chr3 (56-92)||(11327108-11327144)
chr3 (49-93)||(18169156-18169200)
chr3 (56-92)||(23163192-23163228)
chr3 (49-93)||(30796642-30796686)
chr3 (49-93)||(43333698-43333742)
chr3 (382-418)||(46358230-46358266)
[»] scaffold0011 (1 HSPs)
scaffold0011 (49-93)||(219692-219736)


Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 57 - 419
Target Start/End: Original strand, 24044772 - 24045130
Alignment:
Q  57 agttgtcacaaaatgattgtacaaatatgatttctctgaactcagctaagtttctctaaagaggagaagcaaagggataaatttataaacttttgggtgt 156  Q
    |||||||||||||| ||||||||||||| |||||| | ||||||||||||||||||||||      || ||||||||||||||||||||||||| |||||    
T  24044772 agttgtcacaaaataattgtacaaatatcatttctataaactcagctaagtttctctaaa------aaacaaagggataaatttataaacttttcggtgt 24044865  T
Q  157 ttaaaagcatatttatgttttaaacaatatcnnnnnnnnattagag--tcatctttaattttatactcaaaataataagagtagagacacaattttgtct 254  Q
    |||||||||||||||||||||||||||||||        |||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  24044866 ttaaaagcatatttatgttttaaacaatatcttttttt-attagagagtcatctttaattgtatactcaaaataataagagtagagacacaattttgtct 24044964  T
Q  255 caaaatttaatgtagtctttaacnnnnnnn-caatactcaaatcagtccttaacatttttatttggaagattaatttagtctctggtatatagttgaggg 353  Q
    |||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  24044965 caaaatttaatgtagtctttaacaaaaaaaacaatactcaaatcagtccttaacatttttatttggaagactaatttagtctctggtatatagttgaggg 24045064  T
Q  354 actaatatagaggggtgttacgttgagatgagtagtggtgatgagtggttatggatatcgtttttc 419  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  24045065 actaatatagaggggtgttacgttgagatgcgtagtgatgatgagtggttatggatatcgtttttc 24045130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 437 - 612
Target Start/End: Original strand, 24045660 - 24045836
Alignment:
Q  437 aaggacctacgcaataatacttaaaaaggcataaattagttttaaaattgttaagactaccttttcattcaagnnnnnnnnnnnnnnnnntccaccgtgg 536  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 ||||||||||    
T  24045660 aaggacctacacaataatacttaaaaaggcataaattagttttaaaattgttaagactaccttttcattcaagaaaaaacagacaaaaaatccaccgtgg 24045759  T
Q  537 caaaacagaaccattggaatccacaatcacaaa-gcaaaatgatatgaagaagataagtgggaccaatagtatcaca 612  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24045760 caaaacagaaccattggaatccacaatcacaaaagcaaaatgatatgaagaagataagtgggaccaatagtatcaca 24045836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 361 - 422
Target Start/End: Original strand, 9107345 - 9107406
Alignment:
Q  361 tagaggggtgttacgttgagatgagtagtggtgatgagtggttatggatatcgtttttcaat 422  Q
    |||||||| ||||  ||| |||||||||||| |||| |||||||||||||||||||| ||||    
T  9107345 tagaggggagttattttgggatgagtagtggcgatgggtggttatggatatcgttttccaat 9107406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 19426623 - 19426579
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||| |||||||||||||||| |||||||||||| ||||||||    
T  19426623 tgtcaaaaagttgtcacaaaatggttgtacaaatatcatttctct 19426579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 287 - 323
Target Start/End: Complemental strand, 24044762 - 24044726
Alignment:
Q  287 atactcaaatcagtccttaacatttttatttggaaga 323  Q
    ||||||| |||||||||||||||||||||||||||||    
T  24044762 atactcacatcagtccttaacatttttatttggaaga 24044726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 33223557 - 33223597
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgattt 89  Q
    ||||||||||||||||||||||| |||||||||||| ||||    
T  33223557 tgtcaagaagttgtcacaaaatggttgtacaaatatcattt 33223597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 41080162 - 41080126
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctc 92  Q
    ||||||||||||||||||||||||||||| |||||||    
T  41080162 aagttgtcacaaaatgattgtacaaatatcatttctc 41080126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 420
Target Start/End: Original strand, 36449298 - 36449336
Alignment:
Q  382 tgagtagtggtgatgagtggttatggatatcgtttttca 420  Q
    |||||||||  ||||||||||||||||||||||||||||    
T  36449298 tgagtagtgacgatgagtggttatggatatcgtttttca 36449336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 4971326 - 4971289
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  4971326 aagttgtcacaaaatggttgtacaaatatcatttctct 4971289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 12141935 - 12141898
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    ||||| |||||||||| |||||||||||||||||||||    
T  12141935 aagttatcacaaaatggttgtacaaatatgatttctct 12141898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 24700157 - 24700120
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    ||||||| ||||||||||||||||||||| ||||||||    
T  24700157 aagttgttacaaaatgattgtacaaatatcatttctct 24700120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 27164872 - 27164909
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  27164872 aagttgtcacaaattgattgtacaaatatcatttctct 27164909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 37856189 - 37856226
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  37856189 aagttgtcacaaaatggttgtacaaatatcatttctct 37856226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 41985124 - 41985161
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  41985124 aagttgtcacaaattgattgtacaaatatcatttctct 41985161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 2347094 - 2347130
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctc 92  Q
    |||||||||||||||| |||||||||||| |||||||    
T  2347094 aagttgtcacaaaatggttgtacaaatatcatttctc 2347130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 377 - 417
Target Start/End: Complemental strand, 26386041 - 26386001
Alignment:
Q  377 tgagatgagtagtggtgatgagtggttatggatatcgtttt 417  Q
    |||| |||||||||| |||||||||||||||||||| ||||    
T  26386041 tgaggtgagtagtggcgatgagtggttatggatatcatttt 26386001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 29162314 - 29162350
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctc 92  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  29162314 aagttgtcacaaattgattgtacaaatatcatttctc 29162350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 32919008 - 32919052
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||| || ||||||||||||||||||| |||||| ||||||||    
T  32919008 tgtcaaaaaattgtcacaaaatgattgtataaatatcatttctct 32919052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 33050219 - 33050183
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctc 92  Q
    |||||||||||||||| |||||||||||| |||||||    
T  33050219 aagttgtcacaaaatggttgtacaaatatcatttctc 33050183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 38096467 - 38096511
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||| || ||||||||||||| |||||||||||| ||||||||    
T  38096467 tgtcaaaaaattgtcacaaaatggttgtacaaatattatttctct 38096511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 59 - 91
Target Start/End: Original strand, 38218378 - 38218410
Alignment:
Q  59 ttgtcacaaaatgattgtacaaatatgatttct 91  Q
    |||||||||||||||||||||||||| ||||||    
T  38218378 ttgtcacaaaatgattgtacaaatatcatttct 38218410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 382 - 418
Target Start/End: Complemental strand, 40292906 - 40292870
Alignment:
Q  382 tgagtagtggtgatgagtggttatggatatcgttttt 418  Q
    ||||||| || ||||||||||||||||||||||||||    
T  40292906 tgagtagaggcgatgagtggttatggatatcgttttt 40292870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 44175581 - 44175545
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctc 92  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  44175581 aagttatcacaaaatgattgtacaaatattatttctc 44175545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 361 - 417
Target Start/End: Complemental strand, 913 - 857
Alignment:
Q  361 tagaggggtgttacgttgagatgagtagtggtgatgagtggttatggatatcgtttt 417  Q
    |||||||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  913 tagaggggtgttacgttgggatgagtagtgacgatgagtggttatggatatcgtttt 857  T

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Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 361 - 417
Target Start/End: Complemental strand, 38544634 - 38544578
Alignment:
Q  361 tagaggggtgttacgttgagatgagtagtggtgatgagtggttatggatatcgtttt 417  Q
    |||||||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  38544634 tagaggggtgttacgttgggatgagtagtgacgatgagtggttatggatatcgtttt 38544578  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 361 - 420
Target Start/End: Complemental strand, 38548955 - 38548896
Alignment:
Q  361 tagaggggtgttacgttgagatgagtagtggtgatgagtggttatggatatcgtttttca 420  Q
    |||||||||||||| ||| |||||||||||  |||| ||||||||| |||||||||||||    
T  38548955 tagaggggtgttactttgggatgagtagtgacgatgggtggttatgaatatcgtttttca 38548896  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 50797827 - 50797790
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  50797827 aagttgtcacaaaatgattgtacaaatatcatttctct 50797790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 16836139 - 16836175
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctc 92  Q
    ||||||||||||||||||||||||||||| |||||||    
T  16836139 aagttgtcacaaaatgattgtacaaatatcatttctc 16836175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 93
Target Start/End: Complemental strand, 40612152 - 40612113
Alignment:
Q  54 agaagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||||||||||||||| |||||||||||| ||||||||    
T  40612152 agaagttgtcacaaaatggttgtacaaatatcatttctct 40612113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 91
Target Start/End: Complemental strand, 52715014 - 52714979
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttct 91  Q
    ||||||||||||||||||||||||||||| ||||||    
T  52715014 aagttgtcacaaaatgattgtacaaatatcatttct 52714979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 59 - 93
Target Start/End: Original strand, 44517988 - 44518022
Alignment:
Q  59 ttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||||||||||||| ||||||||||||||||||    
T  44517988 ttgtcacaaaatgattatacaaatatgatttctct 44518022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 1690482 - 1690445
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  1690482 aagttgtcacaaaatggttgtacaaatattatttctct 1690445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 9011681 - 9011644
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  9011681 aagttgtcacaaaatggttgtacaaatatcatttctct 9011644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 19442542 - 19442505
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    ||||||||||||||||||||| ||||||| ||||||||    
T  19442542 aagttgtcacaaaatgattgttcaaatatcatttctct 19442505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 27687543 - 27687580
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  27687543 aagttgtcacaaaatggttgtacaaatatcatttctct 27687580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 40596078 - 40596115
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  40596078 aagttgtcacaaaatggttgtacaaatatcatttctct 40596115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 42256496 - 42256459
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  42256496 aagttgtcacaaaatggttgtacaaatatcatttctct 42256459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 8934624 - 8934668
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||| |||||||||||||||  |||||||||||| ||||||||    
T  8934624 tgtcaaaaagttgtcacaaaatagttgtacaaatataatttctct 8934668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 11812430 - 11812386
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||| || |||||||||||||||||||||| ||| ||||||||    
T  11812430 tgtcaaaaaattgtcacaaaatgattgtacaactatcatttctct 11812386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 382 - 418
Target Start/End: Original strand, 27905622 - 27905658
Alignment:
Q  382 tgagtagtggtgatgagtggttatggatatcgttttt 418  Q
    |||||||||| |||||||| |||||||||||||||||    
T  27905622 tgagtagtggcgatgagtgattatggatatcgttttt 27905658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 31427985 - 31428029
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    ||||||||| |||||||||| || |||||||||||| ||||||||    
T  31427985 tgtcaagaaattgtcacaaagtggttgtacaaatatcatttctct 31428029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 39669849 - 39669805
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||| || ||||||||||||| |||||||||||| ||||||||    
T  39669849 tgtcaaaaaattgtcacaaaatggttgtacaaatatcatttctct 39669805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 40238474 - 40238438
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctc 92  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  40238474 aagttgtcaaaaaatgattgtacaaatatcatttctc 40238438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 41507218 - 41507254
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctc 92  Q
    |||||||||||||||| |||||||||||| |||||||    
T  41507218 aagttgtcacaaaatggttgtacaaatatcatttctc 41507254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 44672058 - 44672102
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||| ||||||| | ||||||||||||||||||| ||||||||    
T  44672058 tgtcaaaaagttgttaaaaaatgattgtacaaatatcatttctct 44672102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 50226907 - 50226951
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||| ||||||||||||| || |||||||||||| ||||||||    
T  50226907 tgtcaaaaagttgtcacaaagtggttgtacaaatatcatttctct 50226951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 50528092 - 50528128
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctc 92  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  50528092 aagttgtcacaaattgattgtacaaatatcatttctc 50528128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 52669796 - 52669840
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||| |||||||||||||||||| |||||||||||| | ||||||    
T  52669796 tgtccagaagttgtcacaaaatggttgtacaaatatcacttctct 52669840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 361 - 420
Target Start/End: Original strand, 12296360 - 12296419
Alignment:
Q  361 tagaggggtgttacgttgagatgagtagtggtgatgagtggttatggatatcgtttttca 420  Q
    |||||||||||||  ||| |||||||||||| |||| |||||||||||||||||||||||    
T  12296360 tagaggggtgttattttgggatgagtagtggcgatgggtggttatggatatcgtttttca 12296419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 9162109 - 9162065
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||    
T  9162109 tgtcaaaaagttgtcacaaaatgattgtacaaatatcatttctct 9162065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 92
Target Start/End: Original strand, 169530 - 169573
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctc 92  Q
    |||||| |||||||||||||||| |||||||||||| |||||||    
T  169530 tgtcaaaaagttgtcacaaaatggttgtacaaatatcatttctc 169573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 92
Target Start/End: Complemental strand, 15596439 - 15596396
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctc 92  Q
    |||||||||||||||||||| || |||||||||||| |||||||    
T  15596439 tgtcaagaagttgtcacaaagtggttgtacaaatatcatttctc 15596396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 92
Target Start/End: Complemental strand, 30042173 - 30042134
Alignment:
Q  53 aagaagttgtcacaaaatgattgtacaaatatgatttctc 92  Q
    ||||||||||||||||||| |||||||||||| |||||||    
T  30042173 aagaagttgtcacaaaatggttgtacaaatatcatttctc 30042134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 92
Target Start/End: Original strand, 39010165 - 39010208
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctc 92  Q
    |||||| |||||||||||||||| |||||||||||| |||||||    
T  39010165 tgtcaaaaagttgtcacaaaatggttgtacaaatatcatttctc 39010208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 51 - 93
Target Start/End: Original strand, 51717312 - 51717354
Alignment:
Q  51 tcaagaagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||||||||||||||| || |||||||||||| ||||||||    
T  51717312 tcaagaagttgtcacaaattggttgtacaaatatcatttctct 51717354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 3223025 - 3222988
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  3223025 aagttgtcacaaattgattgtacaaatatcatttctct 3222988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 15638197 - 15638160
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  15638197 aagttgtcaaaaaatgattgtacaaatatcatttctct 15638160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 23094412 - 23094375
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    ||||| ||||||||||||||||||||||| ||||||||    
T  23094412 aagttatcacaaaatgattgtacaaatatcatttctct 23094375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 31221449 - 31221412
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  31221449 aagttgtcacaaattgattgtacaaatatcatttctct 31221412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 38864771 - 38864808
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  38864771 aagttgtcacaaaataattgtacaaatatcatttctct 38864808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 41262653 - 41262690
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  41262653 aagttgtcacaaaataattgtacaaatatcatttctct 41262690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 44368237 - 44368274
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  44368237 aagttgtcacaaattgattgtacaaatatcatttctct 44368274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 93
Target Start/End: Complemental strand, 48783838 - 48783809
Alignment:
Q  64 acaaaatgattgtacaaatatgatttctct 93  Q
    ||||||||||||||||||||||||||||||    
T  48783838 acaaaatgattgtacaaatatgatttctct 48783809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 51359825 - 51359862
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  51359825 aagttgtcacaaaatggttgtacaaatatcatttctct 51359862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 54036553 - 54036590
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  54036553 aagttgtcacaaaatggttgtacaaatatcatttctct 54036590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 3078943 - 3078979
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctc 92  Q
    ||||||| ||||||||||||||||||||| |||||||    
T  3078943 aagttgttacaaaatgattgtacaaatatcatttctc 3078979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 4896528 - 4896572
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||| ||||||||||||| || |||||||||||| ||||||||    
T  4896528 tgtcaaaaagttgtcacaaagtggttgtacaaatatcatttctct 4896572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 6290505 - 6290461
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||||||||||| |||||||  |||||||||||| ||||||||    
T  6290505 tgtcaagaagttgttacaaaatagttgtacaaatatcatttctct 6290461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 9032816 - 9032780
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctc 92  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  9032816 aagttgtcacaaattgattgtacaaatatcatttctc 9032780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 12387689 - 12387725
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctc 92  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  12387689 aagttgtcaaaaaatgattgtacaaatatcatttctc 12387725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 32365691 - 32365727
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctc 92  Q
    |||||||||||||||| |||||||||||| |||||||    
T  32365691 aagttgtcacaaaatggttgtacaaatatcatttctc 32365727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 34116568 - 34116612
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||| ||||||||||||| || |||||||||||| ||||||||    
T  34116568 tgtcaaaaagttgtcacaaagtggttgtacaaatatcatttctct 34116612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 57 - 93
Target Start/End: Complemental strand, 34259850 - 34259814
Alignment:
Q  57 agttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  34259850 agttgtcacaaaatggttgtacaaatatcatttctct 34259814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 47998637 - 47998593
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||| ||||||| |||||||| |||||||||||| ||||||||    
T  47998637 tgtcaaaaagttgttacaaaatggttgtacaaatatcatttctct 47998593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 51296217 - 51296261
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||| ||||||||| ||| ||||||||||||||| ||||||||    
T  51296217 tgtcaaaaagttgtcataaagtgattgtacaaatatcatttctct 51296261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 15722531 - 15722575
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||    
T  15722531 tgtcaaaaagttgtcacaaaatgattgtacaaatatcatttctct 15722575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 30714723 - 30714679
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||| ||| ||||||||||||||||||||||||| ||||||||    
T  30714723 tgtcaaaaagctgtcacaaaatgattgtacaaatatcatttctct 30714679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 384 - 418
Target Start/End: Original strand, 34101392 - 34101426
Alignment:
Q  384 agtagtggtgatgagtggttatggatatcgttttt 418  Q
    |||||||| ||||||||||||||||||||||||||    
T  34101392 agtagtggcgatgagtggttatggatatcgttttt 34101426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 3180027 - 3180064
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  3180027 aagttgtcaaaaaatgattgtacaaatatcatttctct 3180064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 3339534 - 3339571
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  3339534 aagttgtcacaaaatggttgtacaaatatcatttctct 3339571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 30945859 - 30945822
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||||||||||||||||||| |||||| ||||||||    
T  30945859 aagttgtcacaaaatgattgtataaatatcatttctct 30945822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 7611531 - 7611495
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctc 92  Q
    ||||||||||||||||||||| ||||||| |||||||    
T  7611531 aagttgtcacaaaatgattgttcaaatatcatttctc 7611495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 9954591 - 9954547
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||| ||||||||||||| || |||||||||||| ||||||||    
T  9954591 tgtcaaaaagttgtcacaaattggttgtacaaatatcatttctct 9954547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 11785398 - 11785354
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||| || ||||||||||||| |||||||||||| ||||||||    
T  11785398 tgtcaaaaaattgtcacaaaatggttgtacaaatatcatttctct 11785354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 22492055 - 22492099
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||||||||| |||||||||| ||||||| |||| ||||||||    
T  22492055 tgtcaagaagttatcacaaaatggttgtacatatatcatttctct 22492099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 28965868 - 28965912
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||| ||||||| |||||||| |||||||||||| ||||||||    
T  28965868 tgtcaaaaagttgtaacaaaatggttgtacaaatatcatttctct 28965912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 49 - 92
Target Start/End: Original strand, 7596919 - 7596962
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctc 92  Q
    |||||||||||||||||||| ||||||||||||||| |||||||    
T  7596919 tgtcaagaagttgtcacaaagtgattgtacaaatatcatttctc 7596962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 49 - 92
Target Start/End: Original strand, 21273738 - 21273781
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctc 92  Q
    ||||||||||||||||||||||| |||||||||||| |||||||    
T  21273738 tgtcaagaagttgtcacaaaatggttgtacaaatatcatttctc 21273781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 36064066 - 36064029
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  36064066 aagttgtcacaaaatgattgtacaaatatcatttctct 36064029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 11223887 - 11223931
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||    
T  11223887 tgtcaagaagttgtcacaaaatggatgtacaaatatcatttctct 11223931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 22852867 - 22852911
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||||||||||||||||| || |||||||||||| ||||||||    
T  22852867 tgtcaagaagttgtcacaaagtggttgtacaaatatcatttctct 22852911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 91
Target Start/End: Complemental strand, 6806944 - 6806909
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttct 91  Q
    ||||||||||||||||||||||||||||| ||||||    
T  6806944 aagttgtcacaaaatgattgtacaaatatcatttct 6806909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 84
Target Start/End: Complemental strand, 24319379 - 24319348
Alignment:
Q  53 aagaagttgtcacaaaatgattgtacaaatat 84  Q
    ||||||||||||||||||||||||||||||||    
T  24319379 aagaagttgtcacaaaatgattgtacaaatat 24319348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 89
Target Start/End: Original strand, 14710917 - 14710950
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgattt 89  Q
    ||||||||||||||||||||||||||||| ||||    
T  14710917 aagttgtcacaaaatgattgtacaaatatcattt 14710950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 17775464 - 17775501
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    ||||||||||||||||||||| ||||||| ||||||||    
T  17775464 aagttgtcacaaaatgattgttcaaatatcatttctct 17775501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 40413373 - 40413410
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  40413373 aagttgtcacaaaataattgtacaaatatcatttctct 40413410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 42443140 - 42443103
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  42443140 aagttgtcactaaatgattgtacaaatatcatttctct 42443103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 13884195 - 13884231
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctc 92  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  13884195 aagttgtcaaaaaatgattgtacaaatatcatttctc 13884231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 26294232 - 26294188
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||| |||||||||||||||| |||||| ||||| ||||||||    
T  26294232 tgtcaaaaagttgtcacaaaatggttgtaccaatatcatttctct 26294188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 26307489 - 26307445
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||| |||||||||||||||| |||||| ||||| ||||||||    
T  26307489 tgtcaaaaagttgtcacaaaatggttgtaccaatatcatttctct 26307445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 30112835 - 30112871
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctc 92  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  30112835 aagttatcacaaaatgattgtacaaatataatttctc 30112871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 34970250 - 34970206
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||| ||||||| |||||| |||||||||||||| ||||||||    
T  34970250 tgtcaaaaagttgttacaaaaggattgtacaaatatcatttctct 34970206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 38844825 - 38844861
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctc 92  Q
    |||||||||||||||| |||||||||||| |||||||    
T  38844825 aagttgtcacaaaatggttgtacaaatatcatttctc 38844861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 39021471 - 39021515
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||| ||||| |||||||||| |||||||||||| ||||||||    
T  39021471 tgtcaaaaagttatcacaaaatggttgtacaaatatcatttctct 39021515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 51 - 91
Target Start/End: Original strand, 39719278 - 39719318
Alignment:
Q  51 tcaagaagttgtcacaaaatgattgtacaaatatgatttct 91  Q
    |||| ||||||||||||| ||||||||||||||| ||||||    
T  39719278 tcaaaaagttgtcacaaattgattgtacaaatatcatttct 39719318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 45101439 - 45101395
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||| ||||||||||||| || |||||||||||| ||||||||    
T  45101439 tgtcaaaaagttgtcacaaagtggttgtacaaatatcatttctct 45101395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 382 - 420
Target Start/End: Complemental strand, 17853929 - 17853891
Alignment:
Q  382 tgagtagtggtgatgagtggttatggatatcgtttttca 420  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  17853929 tgagtagtggtgatgggtggttatggatatcgtttttca 17853891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 26660439 - 26660483
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||    
T  26660439 tgtcaagaagttgtcacaaaatggatgtacaaatatcatttctct 26660483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 26932031 - 26932075
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||    
T  26932031 tgtcaagaagttgtcacaaaatggatgtacaaatatcatttctct 26932075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 27440515 - 27440479
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctc 92  Q
    ||||||||||||||||||||||||||||| |||||||    
T  27440515 aagttgtcacaaaatgattgtacaaatatcatttctc 27440479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 36713206 - 36713250
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||||||||||||||||| || |||||||||||| ||||||||    
T  36713206 tgtcaagaagttgtcacaaagtggttgtacaaatatcatttctct 36713250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 92
Target Start/End: Complemental strand, 19127167 - 19127124
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctc 92  Q
    |||||||||||||||||||| || |||||||||||| |||||||    
T  19127167 tgtcaagaagttgtcacaaagtggttgtacaaatatcatttctc 19127124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 3771034 - 3771083
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctctgaact 98  Q
    |||||| |||||||||||||||| ||||||| |||| |||||||| ||||    
T  3771034 tgtcaaaaagttgtcacaaaatggttgtacagatatcatttctctaaact 3771083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 3960204 - 3960241
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  3960204 aagttgtcaaaaaatgattatacaaatatgatttctct 3960241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 14914408 - 14914371
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  14914408 aagttgtcacaaaatggttgtacaaatatcatttctct 14914371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 92
Target Start/End: Complemental strand, 42699098 - 42699057
Alignment:
Q  51 tcaagaagttgtcacaaaatgattgtacaaatatgatttctc 92  Q
    |||| |||||||||||||||| |||||||||||| |||||||    
T  42699098 tcaaaaagttgtcacaaaatggttgtacaaatatcatttctc 42699057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 3109622 - 3109658
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctc 92  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  3109622 aagttgtcacaaattgattgtacaaatatcatttctc 3109658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 11768018 - 11768062
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||||||||||||||||| ||  ||||||||||| ||||||||    
T  11768018 tgtcaagaagttgtcacaaagtggatgtacaaatatcatttctct 11768062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 14323996 - 14324040
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||||||||||||||||||||  ||| ||||||| ||||||||    
T  14323996 tgtcaagaagttgtcacaaaatggatgtgcaaatatcatttctct 14324040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 16143426 - 16143390
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctc 92  Q
    |||||||||||||||| |||||||||||| |||||||    
T  16143426 aagttgtcacaaaatggttgtacaaatatcatttctc 16143390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 17063901 - 17063865
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctc 92  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  17063901 aagttgtcaaaaaatgattgtacaaatatcatttctc 17063865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 23991162 - 23991206
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    ||||| |||||||||||||| || |||||||||||| ||||||||    
T  23991162 tgtcaggaagttgtcacaaagtggttgtacaaatatcatttctct 23991206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 38500986 - 38500942
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||| || ||||||||||||| |||||||||||| ||||||||    
T  38500986 tgtcaaaaaattgtcacaaaatggttgtacaaatatcatttctct 38500942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 382 - 420
Target Start/End: Complemental strand, 27880011 - 27879973
Alignment:
Q  382 tgagtagtggtgatgagtggttatggatatcgtttttca 420  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  27880011 tgagtagtggtgatgagtggttatggatttcgtttttca 27879973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 22353199 - 22353236
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  22353199 aagttgtcacaaaatgattgtacaaatatcatttctct 22353236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 420
Target Start/End: Original strand, 20572273 - 20572331
Alignment:
Q  361 tagaggggtgttacgttgagatgagtagtggtgatgagtggttatggatatcgtttttca 420  Q
    ||||||||||||   ||||| |||||||||| |||| |||||||||||||||||||||||    
T  20572273 tagaggggtgttcttttgaggtgagtagtggcgatg-gtggttatggatatcgtttttca 20572331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 27307266 - 27307303
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  27307266 aagttgtcacaaattgattgtacaaatatcatttctct 27307303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 29795483 - 29795446
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  29795483 aagttgtcacaaaatggttgtacaaatatcatttctct 29795446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 36909878 - 36909915
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  36909878 aagttgtcacaaaatggttgtacaaatatcatttctct 36909915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 3196122 - 3196158
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctc 92  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  3196122 aagttgtcacaaattgattgtacaaatatcatttctc 3196158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 4738600 - 4738644
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||| ||||||||||||| || |||||||||||| ||||||||    
T  4738600 tgtcaaaaagttgtcacaaagtggttgtacaaatatcatttctct 4738644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 11229349 - 11229393
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||||||||||||||||| ||  ||||||||||| ||||||||    
T  11229349 tgtcaagaagttgtcacaaagtggatgtacaaatatcatttctct 11229393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 18373890 - 18373846
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||| | ||||||| ||||||||||||||||||| ||||||||    
T  18373890 tgtcaaaatgttgtcataaaatgattgtacaaatatcatttctct 18373846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 21805821 - 21805857
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctc 92  Q
    |||||||||| |||||||||||||||||| |||||||    
T  21805821 aagttgtcactaaatgattgtacaaatatcatttctc 21805857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 31296873 - 31296917
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||| | |||||||||||||| |||||||||||| ||||||||    
T  31296873 tgtcaaaacgttgtcacaaaatggttgtacaaatatcatttctct 31296917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 33296099 - 33296143
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||| ||||||||||||| || |||||||||||| ||||||||    
T  33296099 tgtcaaaaagttgtcacaaagtggttgtacaaatatcatttctct 33296143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0592 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0592
Description:

Target: scaffold0592; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 53 - 93
Target Start/End: Original strand, 8339 - 8379
Alignment:
Q  53 aagaagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    ||||||||||||||||||| |||||||||||| ||||||||    
T  8339 aagaagttgtcacaaaatggttgtacaaatataatttctct 8379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 48945890 - 48945846
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||||||||||||||||| || |||||||||||| ||||||||    
T  48945890 tgtcaagaagttgtcacaaagtggttgtacaaatatcatttctct 48945846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 55344324 - 55344368
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||||||||| |||||||||| |||||||||||| ||||||||    
T  55344324 tgtcaagaagttatcacaaaatggttgtacaaatatcatttctct 55344368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 93
Target Start/End: Original strand, 3958051 - 3958090
Alignment:
Q  54 agaagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    ||||||||||||||| ||||||||||||||| ||||||||    
T  3958051 agaagttgtcacaaattgattgtacaaatatcatttctct 3958090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 92
Target Start/End: Original strand, 20380917 - 20380960
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctc 92  Q
    |||||||||||||||||||| || |||||||||||| |||||||    
T  20380917 tgtcaagaagttgtcacaaagtggttgtacaaatatcatttctc 20380960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 49 - 91
Target Start/End: Original strand, 31206879 - 31206921
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttct 91  Q
    |||||| || |||||||||||||||||||||||||| ||||||    
T  31206879 tgtcaaaaatttgtcacaaaatgattgtacaaatatcatttct 31206921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 7249 - 7286
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  7249 aagttgtcagaaaatgattgtacaaatatcatttctct 7286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 1765440 - 1765403
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    ||||||||||||||||| ||||||||||| ||||||||    
T  1765440 aagttgtcacaaaatgaatgtacaaatatcatttctct 1765403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 8254063 - 8254026
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  8254063 aagttgtcacaaaatggttgtacaaatatcatttctct 8254026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 34021498 - 34021535
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  34021498 aagttgtcacaaattgattgtacaaatatcatttctct 34021535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 35074125 - 35074162
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||||| |||||||||||||||||||| ||||||||    
T  35074125 aagttgtcccaaaatgattgtacaaatatcatttctct 35074162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 43169777 - 43169814
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  43169777 aagttgtcacaaaatggttgtacaaatatcatttctct 43169814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 47683837 - 47683800
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  47683837 aagttgtcacaaaatggttgtacaaatatcatttctct 47683800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 48405446 - 48405409
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  48405446 aagttgtcacaaaatggttgtacaaatatcatttctct 48405409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 49196732 - 49196695
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  49196732 aagttgtcacaaaatggttgtacaaatatcatttctct 49196695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 52454129 - 52454166
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  52454129 aagttgtcacaaattgattgtacaaatatcatttctct 52454166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 462436 - 462472
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctc 92  Q
    |||||||||||||||| |||||||||||| |||||||    
T  462436 aagttgtcacaaaatggttgtacaaatatcatttctc 462472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 11327144 - 11327108
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctc 92  Q
    |||||||||||||||| |||||||||||| |||||||    
T  11327144 aagttgtcacaaaatggttgtacaaatatcatttctc 11327108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 18169200 - 18169156
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||| ||||||||||||| || |||||||||||| ||||||||    
T  18169200 tgtcaaaaagttgtcacaaagtggttgtacaaatatcatttctct 18169156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 23163192 - 23163228
Alignment:
Q  56 aagttgtcacaaaatgattgtacaaatatgatttctc 92  Q
    ||||||||||||| || ||||||||||||||||||||    
T  23163192 aagttgtcacaaattggttgtacaaatatgatttctc 23163228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 30796642 - 30796686
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||||||||||||||||| || |||| ||||||| ||||||||    
T  30796642 tgtcaagaagttgtcacaaagtggttgtgcaaatatcatttctct 30796686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 43333698 - 43333742
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||| ||||||||| ||||||| ||||||||||| ||||||||    
T  43333698 tgtcaaaaagttgtcataaaatgactgtacaaatatcatttctct 43333742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 382 - 418
Target Start/End: Complemental strand, 46358266 - 46358230
Alignment:
Q  382 tgagtagtggtgatgagtggttatggatatcgttttt 418  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  46358266 tgagtagtggtgatgcgtggttatggatttcgttttt 46358230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 219692 - 219736
Alignment:
Q  49 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 93  Q
    |||||| ||||||||||||| || |||||||||||| ||||||||    
T  219692 tgtcaaaaagttgtcacaaagtggttgtacaaatatcatttctct 219736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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