View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10588_3 (Length: 546)
Name: NF10588_3
Description: NF10588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10588_3 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 2 - 291
Target Start/End: Original strand, 4338477 - 4338766
Alignment:
| Q |
2 |
aagatttctttatgccaagttattagttttcctcatacaatggtttactaagcattcaacctttaattttctttcaggtctccaaatcaataaactgtga |
101 |
Q |
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| T |
4338477 |
aagatttctttatgccaagttattagttttcctcatacaatggtttactaagcattcaacctttaattttctttcaggtctccaaatcaataaactgtga |
4338576 |
T |
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| Q |
102 |
gagagactgggttttgacatgtgatataacatattcatagaaatagaacgaagaaaagttatagcaactctcactctaacacttcattggatgaatttca |
201 |
Q |
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| T |
4338577 |
gagagactgggttttgatatgtgatataacatattcatagaaatagaacgaagaaaagttatagcaactctcactctaacacttcattggatgaatttca |
4338676 |
T |
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| Q |
202 |
tgaagggttcaacgcattatatgagatccatttccaaagtggcgggacaatgcataaaatttatccagaaagaatattagagttagagtg |
291 |
Q |
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| T |
4338677 |
tgaagggttcaacgcattatatgagatccatttccaaagtggcgggacaatgcataaaatttatccagaaagaatattagagttagagtg |
4338766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 4318561 - 4318475
Alignment:
| Q |
11 |
ttatgccaagttattagttttcctcatacaatggtttactaagc-attcaacctttaattttctttcaggtctccaaatcaataaac |
96 |
Q |
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| T |
4318561 |
ttatgctaagtttttggtttttctcatacagtggtttactaagccattcaatcttttattttctttcaggtctccaaaccaataaac |
4318475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 11 - 103
Target Start/End: Original strand, 4364340 - 4364435
Alignment:
| Q |
11 |
ttatgccaagttattagttttcctcatacaatgg--tttactaag-cattcaacctttaattttctttcaggtctccaaatcaataaactgtgaga |
103 |
Q |
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| T |
4364340 |
ttatgcgaagttttgagttttcctcatagagtggcgtttactaagacattcaatctttaattttctttcaggtcttcaaagcaataaactgggaga |
4364435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 107
Target Start/End: Original strand, 4347914 - 4347993
Alignment:
| Q |
29 |
tttcctcatacaatggtttactaagc-attcaacctttaattttctttcaggtctccaaatcaataaactgtgagagaga |
107 |
Q |
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|||| ||| ||| ||||||||||||| ||| || ||||||||||||||| ||||| |||| ||||||| || |||||||| |
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| T |
4347914 |
tttcgtcaaacagtggtttactaagccatttaatctttaattttctttctggtcttcaaagcaataaaatgagagagaga |
4347993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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