View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10588_4 (Length: 533)
Name: NF10588_4
Description: NF10588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10588_4 |
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Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 56 - 484
Target Start/End: Original strand, 51273692 - 51274120
Alignment:
| Q |
56 |
actttgctccaacaaatgaaagaacaagaaaaccagaaaaaatggcacttcaattttatctcaaagcgtaaacttctcatttcgttctcaccaaatctta |
155 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
51273692 |
actttgctccaacaaatgaaagaacaagaaaaccagaaaaaatggcacttcaattttatctcaaagcgtaaacttctcatttcgttctcaccaaatctca |
51273791 |
T |
|
| Q |
156 |
atctttctactcctgaaaatcaaatttcattgtgttttcttggccgaaaattcgatcctaaacttgacaatataacaagnnnnnnncatgtcttatattc |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
51273792 |
atctttctactcctgaaaatcaaatttcattgtgttttcttggccgaaaattcgatcctaaacttgacaatataacaagaaaaaaacatgtcttatattc |
51273891 |
T |
|
| Q |
256 |
gagaattgtcgggttttcaaatggcttgcttatctgcaagaaaaccacacgtggtagagtctaccatgtatgcaacatcctcacaaaagattggatcaaa |
355 |
Q |
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|||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51273892 |
gagaattgtcggattttcaaatggcttgtttctctgcaagaaaaccacacgtggtagagtctaccatgtatgcaacatcctcacaaaagattggatcaaa |
51273991 |
T |
|
| Q |
356 |
cttccactccctccaccgccgggaaccggtcacaataaacgtgaccgtgtactcgaaggccttgtttgtgaaccttattatagcatcggagaaagcacaa |
455 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
51273992 |
cttccactccctccaccgccgggaaccggtcacaataaacgtgaccgtgtactagaaggctttgtttgtgaaccttattatagcatcggagaaagcacaa |
51274091 |
T |
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| Q |
456 |
agaaagtatctttcaaccatcacaggttc |
484 |
Q |
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| T |
51274092 |
agaaagtatctttcaaccatcacaggttc |
51274120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 48403187 - 48403146
Alignment:
| Q |
90 |
agaaaaaatggcacttcaattttatctcaaagcgtaaacttc |
131 |
Q |
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| T |
48403187 |
agaaagaatggcacttcaattttatctcaaagtgtaaacttc |
48403146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 149; Significance: 2e-78; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 132 - 429
Target Start/End: Original strand, 14907797 - 14908094
Alignment:
| Q |
132 |
tcatttcgttctcaccaaatcttaatctttctactcctgaaaatcaaatttcattgtgttttcttggccgaaaattcgatcctaaacttgacaatataac |
231 |
Q |
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|||||||||||||||| ||||| |||||||||||||||||||| ||||||| ||| |||||||| ||||||||||||| |||||||| ||||||||||| |
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| T |
14907797 |
tcatttcgttctcacccaatctcaatctttctactcctgaaaaccaaatttacttgagttttctttgccgaaaattcgaccctaaactcgacaatataac |
14907896 |
T |
|
| Q |
232 |
aagnnnnnnncatgtcttatattcgagaattgtcgggttttcaaatggcttgcttatctgcaagaaaaccacacgtggtagagtctaccatgtatgcaac |
331 |
Q |
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| T |
14907897 |
aagaaaataaaatgtcttatattcgagaattgttggatcttccaatggcttgtttctgtgcaagaaaaccacacgtagtagagtctaccatgtctgcaac |
14907996 |
T |
|
| Q |
332 |
atcctcacaaaagattggatcaaacttccactccctccaccgccgggaaccggtcacaataaacgtgaccgtgtactcgaaggccttgtttgtgaacc |
429 |
Q |
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||||||||||||||| |||||||| |||||||||||||||||| ||||| |||| ||| | ||||||||||||| |||||| ||||||| ||||| |
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| T |
14907997 |
atcctcacaaaagataggatcaaatttccactccctccaccgctacgaaccagtcataatgagcgtgaccgtgtacatgaaggctttgtttgcgaacc |
14908094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 56 - 234
Target Start/End: Complemental strand, 5051674 - 5051497
Alignment:
| Q |
56 |
actttgctccaacaaatgaaagaacaagaaaaccagaaaaaatggcacttcaattttatctcaaagcgtaaacttctcatttcgttctcaccaaatctta |
155 |
Q |
| |
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|||||| ||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||| ||| | | ||||||| | ||||| |
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| T |
5051674 |
actttggtccaacaaatgaaagaagaagaaaaccagaaaag-tagcacttcaattttatctcaaagcgtaaactcctcgtatggttctcatccaatctcc |
5051576 |
T |
|
| Q |
156 |
atctttctactcctgaaaatcaaatttcattgtgttttcttggccgaaaattcgatcctaaacttgacaatataacaag |
234 |
Q |
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||||||||||||||| ||| |||||||| | | ||||||| ||| |||||||||| |||||||| |||||||||||||| |
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| T |
5051575 |
atctttctactcctgcaaaccaaatttcctagagttttctgggctgaaaattcgaccctaaactcgacaatataacaag |
5051497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 330 - 484
Target Start/End: Complemental strand, 5051458 - 5051299
Alignment:
| Q |
330 |
acatcctcacaaaagattggatcaaacttccactccctccaccgccgggaaccggtcacaa-taaacgtgaccgtgtactcgaaggccttgtttgtgaac |
428 |
Q |
| |
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|||||||| | |||||||||||||||||||||||||||||| || || ||||||||| || ||||||||||||||||||||||||| | ||||| |||| |
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| T |
5051458 |
acatcctcgcgaaagattggatcaaacttccactccctccatagctggaaaccggtcagaaataaacgtgaccgtgtactcgaaggcttcgtttgcgaac |
5051359 |
T |
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| Q |
429 |
ctta-----ttatagcatcggagaaagcacaaagaaagtatctttcaaccatcacaggttc |
484 |
Q |
| |
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|||| ||||||||| | | || |||||| ||||||||||||||||||||||||||| |
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| T |
5051358 |
cttattattttatagcattgatggaaacacaaa-aaagtatctttcaaccatcacaggttc |
5051299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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