View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10588_5 (Length: 525)
Name: NF10588_5
Description: NF10588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10588_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 102 - 514
Target Start/End: Complemental strand, 952761 - 952329
Alignment:
| Q |
102 |
aacgaaatataagtaaaagtgtttgagaaagtaaacaatgtatttgatctaaattttagacaatatggatttgacttttcgaannnnnnnaattttgatt |
201 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||| |
|
|
| T |
952761 |
aacgaaatataagtaaaagtgcttgagaaagtaaacaatgtatttgatctaaattttagataatatgcatttgacttttcgaatttttttaattttgatt |
952662 |
T |
|
| Q |
202 |
tgatttaagaagaaacgactacgtttgaagaagataaaaataaataaattataattttgattaaacatgttatttgatgtttatttaattgaa-cttgtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
952661 |
tgatttaagaagaaacgactacgtttgaagaagataaaaataaataaattataagttttattaaacatgttatttgatgtttatttaattgaaacttgtt |
952562 |
T |
|
| Q |
301 |
tcatgtaacaggtttgtattttttg-----------------gata--gaaatacaaaatggagttcttgaagctttttattgttgcattgatgcctgtt |
381 |
Q |
| |
|
||||||||||| |||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
952561 |
tcatgtaacagaattgtattttttgtaatagacaagaaagaagataaagaaatacaaaatggaattcttgaagctttttattgttgcattgatgcctgtt |
952462 |
T |
|
| Q |
382 |
cttaaggtactattgatcactgttcttggaacattccttgcacttgatcgttttgatatactcagtagagagactgcaaggaaaaacttgaatactgtaa |
481 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
952461 |
cttaaggtactattgatcactgttcttggaacattccttgcacttgatcgttttgatatactcagtagagagactgcaaggaaaaacttgaatactgtaa |
952362 |
T |
|
| Q |
482 |
gtttcatttcatctctttcttccattaattcat |
514 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
952361 |
gtttcatttcatctctttcttccattaattcat |
952329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 230 - 514
Target Start/End: Original strand, 1099325 - 1099609
Alignment:
| Q |
230 |
agaagataaaaataaataaattataattttgattaaacatgttatttgatgtttatttaattgaacttgtttcatgtaacaggtttgtattttttggata |
329 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1099325 |
agaagattaaaataaataaattataattttgattaaacatgttatttgatgtttatttaattgaacttgtttcatgtaacaggtttgtattttttggata |
1099424 |
T |
|
| Q |
330 |
gaaatacaaaatggagttcttgaagctttttattgttgcattgatgcctgttcttaaggtactattgatcactgttcttggaacattccttgcacttgat |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1099425 |
gaaatacaaaatggagttcttgaagctttttattgttgcattgatgcctgttcttaaggtactattgatcactgttcttggaacattccttgcacttgat |
1099524 |
T |
|
| Q |
430 |
cgttttgatatactcagtagagagactgcaaggaaaaacttgaatactgtaagtttcatttcatctctttcttccattaattcat |
514 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1099525 |
cgttttgatatactcagtagagagactgcaaggaaaaacttgaatactgtaagtttcatttcatctctttcttccattaattcat |
1099609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 952862 - 952794
Alignment:
| Q |
1 |
ataatcaggtaatcaacattctttatcaacatttcttcatttctcattctagctagttgaattaagttg |
69 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
952862 |
ataatcaggtaatcaacattctttatcaacatttcttcatttctcattctagctagttgaattaagttg |
952794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 1099208 - 1099251
Alignment:
| Q |
25 |
atcaacatttcttcatttctcattctagctagttgaattaagtt |
68 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||| ||||||| |
|
|
| T |
1099208 |
atcaacatttcttcatttttcattctagctggttgagttaagtt |
1099251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University