View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10588_6 (Length: 506)

Name: NF10588_6
Description: NF10588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10588_6
NF10588_6
[»] chr4 (2 HSPs)
chr4 (17-495)||(49275856-49276334)
chr4 (17-495)||(49279422-49279891)
[»] chr5 (3 HSPs)
chr5 (152-335)||(2289006-2289186)
chr5 (337-461)||(2289284-2289408)
chr5 (53-106)||(2288554-2288607)
[»] chr6 (3 HSPs)
chr6 (152-335)||(34789750-34789930)
chr6 (337-461)||(34789525-34789649)
chr6 (53-106)||(34790156-34790209)


Alignment Details
Target: chr4 (Bit Score: 467; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 17 - 495
Target Start/End: Original strand, 49275856 - 49276334
Alignment:
Q  17 catatctccaagtgctgctttttacgattaggaattctttcataatgcactcttgttctctcaaattcacacttagcagtctcaaaatcatggaatgcct 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49275856 catatctccaagtgctgctttttacgattaggaattctttcataatgcactcttgttctctcaaattcacacttagcagtctcaaaatcatggaatgcct 49275955  T
Q  117 tccaaaacaactcttgctttaccaactctggtcgagcaattgcagactcaaatattgctctagctcgttcagtctctgataaagatctctccaaatcttc 216  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49275956 tccaaaacaactcttgctttaccaattctggtcgagcaattgcagactcaaatattgctctagctcgttcagtctctgataaagatctctccaaatcttc 49276055  T
Q  217 tgcatacttgctccatgctttgcatttgtcagctgaccactccagataatttacatacaatttcctgcatcgatctgtattaccaagctccaattccatt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49276056 tgcatacttgctccatgctttgcatttgtcagctgaccactccagataatttacatacaatttcctgcatcgatctgtattaccaagctccaattccatt 49276155  T
Q  317 tctatatacttcttaaatagcttatgtttaggagcctttccaatagcataatctaatattctacgagcacctttgaaattcagcatacgtatttcaaact 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  49276156 tctatatacttcttaaatagcttatgtttaggagcctttccaatagcataatctaatattcgacgagcacctttgaaattcagcatacgtatttcaaact 49276255  T
Q  417 gtgctgctagaagccataactttgcagatgagaacttcttgtgagccatcagtttgagaaacttcctgtacacatctct 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  49276256 gtgctgctagaagccataactttgcagatgagaacttcttgtgagccatcagtttgagaaaattcctgtacacatctct 49276334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 17 - 495
Target Start/End: Original strand, 49279422 - 49279891
Alignment:
Q  17 catatctccaagtgctgctttttacgattaggaattctttcataatgcactcttgttctctcaaattcacacttagcagtctcaaaatcatggaatgcct 116  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||    
T  49279422 catatctccaagtgctgctttttcctattaggaattctttcataatgcactcttgttctctcaaattcaatcttagcagtctcaaaatcaaggaatgcct 49279521  T
Q  117 tccaaaacaactcttgctttaccaactctggtcgagcaattgcagactcaaatattgctctagctcgttcagtctctgataaagatctctccaaatcttc 216  Q
    |||| |||||||| ||||         ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||    
T  49279522 tccataacaactcatgct---------ctggtcgagcaattgcagactcaaatattgctctagctcgttcagtctcagatgaagatctctccaactcttc 49279612  T
Q  217 tgcatacttgctccatgctttgcatttgtcagctgaccactccagataatttacatacaatttcctgcatcgatctgtattaccaagctccaattccatt 316  Q
    |||||||||||||||||| |||||||| | |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  49279613 tgcatacttgctccatgcattgcattttttagctgaccactccagatactttacatacaaattcctgcatcgatctgtattaccaagctccaattccatt 49279712  T
Q  317 tctatatacttcttaaatagcttatgtttaggagcctttccaatagcataatctaatattctacgagcacctttgaaattcagcatacgtatttcaaact 416  Q
    || ||||||||||||||||||| ||||||||||||  ||||||| |||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  49279713 tcaatatacttcttaaatagctcatgtttaggagcgattccaattgcataacctaatattcgacgagcaccattgaaattcagcatacgtatttcaaact 49279812  T
Q  417 gtgctgctagaagccataactttgcagatgagaacttcttgtgagccatcagtttgagaaacttcctgtacacatctct 495  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| | || ||||||||||||||||    
T  49279813 gtgctgctagaagccataactttgcagatgagatcttcttgtgagccatcaggttgaaacacctcctgtacacatctct 49279891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 152 - 335
Target Start/End: Original strand, 2289006 - 2289186
Alignment:
Q  152 gcaattgcagactcaaatattgctctagctcgttcagtctctgataaagatctctccaaatcttctgcatacttgctccatgctttgcatttgtcagctg 251  Q
    |||||||||  |||||||||||||||||||||||||||||| | |||||||||||| |    ||||||||||||||||||||| | ||| || |||| ||    
T  2289006 gcaattgcaagctcaaatattgctctagctcgttcagtctcagctaaagatctctctag---ttctgcatacttgctccatgcatagcaattttcaggtg 2289102  T
Q  252 accactccagataatttacatacaatttcctgcatcgatctgtattaccaagctccaattccatttctatatacttcttaaata 335  Q
    ||||||||| ||| ||| |||| | ||| ||||||| |||| |||||||||||| || ||| || |||||||||||||||||||    
T  2289103 accactccaaatacttttcatatagttttctgcatctatctatattaccaagctgcagttctatctctatatacttcttaaata 2289186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 337 - 461
Target Start/End: Original strand, 2289284 - 2289408
Alignment:
Q  337 cttatgtttaggagcctttccaatagcataatctaatattctacgagcacctttgaaattcagcatacgtatttcaaactgtgctgctagaagccataac 436  Q
    ||||| |||||||||||||||||||||||   ||||||||  |||||||||| ||| |||||||  ||||||||||||||| |||||||||||||||| |    
T  2289284 cttatctttaggagcctttccaatagcattccctaatatttgacgagcacctgtgagattcagctgacgtatttcaaactgggctgctagaagccatatc 2289383  T
Q  437 tttgcagatgagaacttcttgtgag 461  Q
    |||||| |||||||||||| |||||    
T  2289384 tttgcaaatgagaacttctggtgag 2289408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 106
Target Start/End: Original strand, 2288554 - 2288607
Alignment:
Q  53 ctttcataatgcactcttgttctctcaaattcacacttagcagtctcaaaatca 106  Q
    ||||||||| || |||||| |||||||||||||||||  ||||| |||||||||    
T  2288554 ctttcataaagcgctcttgctctctcaaattcacactcggcagtttcaaaatca 2288607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 152 - 335
Target Start/End: Complemental strand, 34789930 - 34789750
Alignment:
Q  152 gcaattgcagactcaaatattgctctagctcgttcagtctctgataaagatctctccaaatcttctgcatacttgctccatgctttgcatttgtcagctg 251  Q
    |||||||||  |||||||||||||||||||||||| ||||| | |||||||||||| |    |||||||||||||| |||||| | ||| || |||| ||    
T  34789930 gcaattgcaagctcaaatattgctctagctcgttcggtctcagctaaagatctctctag---ttctgcatacttgcaccatgcatagcaattttcaggtg 34789834  T
Q  252 accactccagataatttacatacaatttcctgcatcgatctgtattaccaagctccaattccatttctatatacttcttaaata 335  Q
     |||||||| ||| ||| |||| | ||| |||||||||||| |||||||||||| || ||| || |||||||||||||||||||    
T  34789833 tccactccaaatatttttcatatagttttctgcatcgatctatattaccaagctgcagttctatctctatatacttcttaaata 34789750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 337 - 461
Target Start/End: Complemental strand, 34789649 - 34789525
Alignment:
Q  337 cttatgtttaggagcctttccaatagcataatctaatattctacgagcacctttgaaattcagcatacgtatttcaaactgtgctgctagaagccataac 436  Q
    ||||| ||| |||||||||||||||||||   ||||||||  |||||  ||  ||| |||||||  ||||||||||||||| |||||||||||||||| |    
T  34789649 cttatcttttggagcctttccaatagcatttcctaatatttgacgagagccagtgagattcagctgacgtatttcaaactgggctgctagaagccatatc 34789550  T
Q  437 tttgcagatgagaacttcttgtgag 461  Q
    |||||| |||||||||||| |||||    
T  34789549 tttgcaaatgagaacttctggtgag 34789525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 53 - 106
Target Start/End: Complemental strand, 34790209 - 34790156
Alignment:
Q  53 ctttcataatgcactcttgttctctcaaattcacacttagcagtctcaaaatca 106  Q
    ||||||||| ||||||||| ||||||||||||||||| | |||| |||||||||    
T  34790209 ctttcataaagcactcttgctctctcaaattcacactcaacagtttcaaaatca 34790156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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