View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10588_7 (Length: 492)
Name: NF10588_7
Description: NF10588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10588_7 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 22 - 492
Target Start/End: Complemental strand, 1197627 - 1197157
Alignment:
| Q |
22 |
catcataaacatggtcctttaactcaacctaacgtggaaaaacttctttggttttctcacatgcatgtgacacacagaaaaaactcaaacccttattata |
121 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1197627 |
catcgtaaacatggtcctttaactcaacctaacgtggaaaaacttctttggttttctcacatgcatgtgacacacagaaaaaactcaaacccttattata |
1197528 |
T |
|
| Q |
122 |
atattcatcatttagtnnnnnnnnnnnnnnnngaatttattatactattgacaaatgcaaacttccaaggtctataaattggaaacatgcaacccttcaa |
221 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1197527 |
atattcatcatttagtaaaaataaaataaaatgaattcattatactattgacaaatgcaaacttccaaggtctataaattggaaacatgcaacccttcaa |
1197428 |
T |
|
| Q |
222 |
gccaaattcatcacaagaacaaacaaagaaatttcttacatatccaaccgacaaagaaagagacatcaccatcaatatcatcaccatgtcaatggatcaa |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1197427 |
gccaaattcatcacaagaacaaacaaagaaatttcttacatatccaaccgacaaagaaagagacatcaccatcaatatcatcaccatgtcaatggatcaa |
1197328 |
T |
|
| Q |
322 |
aagaaatctaacaaaattagagaaattgttagacttcaacagatccttaagaaatggagaaaaatagcaaactcatcaaaaaccacagccaacaccacca |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1197327 |
aagaaatctaacaaaattagagaaattgttagacttcaacagatccttaagaaatggagaaaaatagcaaactcatcaaaaaccacagccaacaccacca |
1197228 |
T |
|
| Q |
422 |
ccatcactagaagcaaaagcatgaagtttctaaaaagaacactttctctttctgaacgtgaaggaggaaca |
492 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1197227 |
ccatcactagaagcaaaagcatgaagtttctaaaaagaacactttctctttctgaacgtgaaggaggaaca |
1197157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 155 - 490
Target Start/End: Original strand, 7289099 - 7289420
Alignment:
| Q |
155 |
aatttattatactattgacaaatgcaaacttccaaggtctataaattggaaacatgcaaccc-ttcaagccaaattcatcacaagaacaaacaaagaaat |
253 |
Q |
| |
|
|||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||| |||||||| |
|
|
| T |
7289099 |
aattcattataatattgacaaatgtaaacttccaaggtctataaattggaaacatgcaaccccttcaag------tcatcaaaagaacaaataaagaaat |
7289192 |
T |
|
| Q |
254 |
ttcttacatatccaaccgacaaagaaagagacatcaccatcaatatcatcaccatgtcaatggatcaaaagaaatctaacaaaattagagaaattgttag |
353 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7289193 |
tttttacatatccaaccgacaaagaaagagacaccaccatca------tcaccatgtcaatggatcaaaagaaatctaacaaaattagagaaatcgttag |
7289286 |
T |
|
| Q |
354 |
acttcaacagatccttaagaaatggagaaaaatagcaaactcatcaaaaaccacagccaacaccaccaccatcactagaagcaaaagcatgaagtttcta |
453 |
Q |
| |
|
||||||||| |||||| ||||||| | |||||||| ||||| || | ||| | | ||||||||| |||||||| || |||||||| ||||||||||||| |
|
|
| T |
7289287 |
acttcaacaaatcctt-agaaatgaaaaaaaatagaaaacttat-acaaatta-aaccaacaccaacaccatcaataaaagcaaaatcatgaagtttcta |
7289383 |
T |
|
| Q |
454 |
aaaagaacactttctctttctgaacgtgaaggaggaa |
490 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7289384 |
aaaagaacactttctctatctgaacgtgaaggaggaa |
7289420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 7288895 - 7288988
Alignment:
| Q |
28 |
aaacatggtcctttaactcaacctaacgtggaaaaacttctttggttttctcacatgcatgtgacacacagaaaaaactcaaacccttattataatatt |
126 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
7288895 |
aaacatggtcctttaactcaacctaacg-----aaacttatttagttttctcacatgcatgtgtcacaaagaaaaaactcaaacccttattataatatt |
7288988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 321 - 382
Target Start/End: Original strand, 50470930 - 50470991
Alignment:
| Q |
321 |
aaagaaatctaacaaaattagagaaattgttagacttcaacagatccttaagaaatggagaa |
382 |
Q |
| |
|
||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
50470930 |
aaagaaacctaacaaaatcagagaaatcgttagacttcaacagatccttaagaaatggagaa |
50470991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University