View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10588_8 (Length: 481)
Name: NF10588_8
Description: NF10588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10588_8 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 44 - 285
Target Start/End: Complemental strand, 41343283 - 41343037
Alignment:
| Q |
44 |
gatctaaaccgcagatttgagatcggacagttcatatttcaaacatatgatgtcacacaatctgagttaccaatttgatatcggacggacggcacaaatc |
143 |
Q |
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| T |
41343283 |
gatctcaactgcagatttgagatcggacagttcgtatttcaaacacatgatgtcacacaatctgagttaccaatttgatatcggacggacggcacaaatc |
41343184 |
T |
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| Q |
144 |
aattacatagtcttcggaaaattcattccacgtttcttgtgaacagacaaacatgtacacaaga-----aaatgatttttatgttgaaattatacgtgta |
238 |
Q |
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| T |
41343183 |
aattacataatcttcagaaaattcattccacgtttcttgtgaacagacaaacatgtacacaagaaaattaaatgatttttatgttgaaattatacgtgta |
41343084 |
T |
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| Q |
239 |
tatcgacatattattttaaagttatatataaatgtacattacattac |
285 |
Q |
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| T |
41343083 |
tatcgacatattattttaaagttatatataaatgtacattacattac |
41343037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 283 - 481
Target Start/End: Complemental strand, 41342995 - 41342804
Alignment:
| Q |
283 |
tactaactagcagttgataatatgacgtgcatgcctagattgaagtttgtaattattaattaatcatggtcattgtatgtgatctttgttggcatgcatt |
382 |
Q |
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| T |
41342995 |
tactaacttgcagttgataat--gacgtgcatgcctagattgatgtttgtaattattaattaatcatggtcattgtatgtgatctttgttggcatgcatt |
41342898 |
T |
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| Q |
383 |
attattattactaggtaaagtatccttctgcattgagctcgtttgatagattgatgaatgccatctcattgggaaaaggatcgtcgtatttttagatta |
481 |
Q |
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| T |
41342897 |
att---attactaggtaaagcacccttctgcattgagctcgtttgatagattgatgaaagc--tgccattgggaaaaggatcgtcgtatttttagatta |
41342804 |
T |
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