View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10588_9 (Length: 454)

Name: NF10588_9
Description: NF10588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10588_9
NF10588_9
[»] chr1 (8 HSPs)
chr1 (11-454)||(15755632-15756072)
chr1 (11-436)||(15766501-15766923)
chr1 (98-453)||(15779724-15780076)
chr1 (98-412)||(15737625-15737936)
chr1 (97-412)||(15730021-15730333)
chr1 (96-225)||(33411586-33411715)
chr1 (11-88)||(15779616-15779693)
chr1 (322-378)||(33411436-33411492)
[»] chr7 (6 HSPs)
chr7 (176-229)||(39256586-39256639)
chr7 (179-231)||(39193595-39193647)
chr7 (179-231)||(39222948-39223000)
chr7 (176-226)||(39238620-39238670)
chr7 (185-226)||(39176879-39176920)
chr7 (179-232)||(39259835-39259888)


Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 11 - 454
Target Start/End: Original strand, 15755632 - 15756072
Alignment:
Q  11 agcatagggttcataatccatatagtgataatgacagttgcatccatgattgaaagacatagacttagtgtggccaaaaaccatgaagttccattgagca 110  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  15755632 agcatagggttcataatccacatagtgataatgacagttgcatccatgattgaaagacatagacttagtgtggccaaaaaacatgaagttccattaagca 15755731  T
Q  111 tattcattttgctaccacaatttatacttatgggagtggctgaagcacttttagagggtgcaaaaatggagtttttctatgatcaagcaccagaaagcat 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15755732 tattcattttgctaccacaatttatacttatgggagtggctgaagcacttttagagggtgcaaaaatggagtttttctatgatcaagcaccagaaagcat 15755831  T
Q  211 gaagagtcttggaacatcatactcattaactactactggaattggtagttttctcagcacctttcttctctcaacagtttcacatgtcactgagaaacac 310  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||     
T  15755832 gaagagtcttggaacatcatattccttaactactactggaattggtagttttctcagcacttttcttctctcaacagtttcacatgtcactgagaaaca- 15755930  T
Q  311 agtcgccgtcgagggtggattttgaataacttgaatgcttctcatcttgattactactatgcatttttggccatactaaatgtcttgaactttgtcttct 410  Q
      | |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15755931 --tggtggtcgagggtggattttgaataacttgaatgcttctcatcttgattactactatgcatttttggccatactaaatgtcttgaactttgtcttct 15756028  T
Q  411 ttgtggttgtttcaaagttctatgtgtcaagagctgaagtttct 454  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  15756029 ttgtggttgtttcaaagttctatgtgtcaagagctgaagtttct 15756072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 11 - 436
Target Start/End: Original strand, 15766501 - 15766923
Alignment:
Q  11 agcatagggttcataatccatatagtgataatgacagttgcatccatgattgaaagacatagacttagtgtggccaaaaaccatgaagttccattgagca 110  Q
    |||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||| ||||||||||||| |||||| |||||||||||||| ||||    
T  15766501 agcatagggttcataatccacatagtgataatgatagttgcattcatgattgaaagacaaagacttagtgtggtcaaaaaacatgaagttccattaagca 15766600  T
Q  111 tattcattttgctaccacaatttatacttatgggagtggctgaagcacttttagagggtgcaaaaatggagtttttctatgatcaagcaccagaaagcat 210  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15766601 tattcattttgcttccacaatttatacttatgggagtggctgaagcacttttagagggtgcaaaaatggagtttttctatgatcaagcaccagaaagcat 15766700  T
Q  211 gaagagtcttggaacatcatactcattaactactactggaattggtagttttctcagcacctttcttctctcaacagtttcacatgtcactgagaaacac 310  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  15766701 gaagagccttggaacatcatactcattaactactactggaattggtagttttctcagcacttttcttctctcagcagtttcacatgtcactgagaaacac 15766800  T
Q  311 agtcgccgtcgagggtggattttgaataacttgaatgcttctcatcttgattactactatgcatttttggccatactaaatgtcttgaactttgtcttct 410  Q
     |||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||    
T  15766801 ggtcgc---cgagggtggattttgaataacttgaatgcttctcatcttgattactactatgcatttttggctatactaaatgtcataaactttgtcttct 15766897  T
Q  411 ttgtggttgtttcaaagttctatgtg 436  Q
    ||||||||||||||||||||||||||    
T  15766898 ttgtggttgtttcaaagttctatgtg 15766923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 98 - 453
Target Start/End: Original strand, 15779724 - 15780076
Alignment:
Q  98 gttccattgagcatattcattttgctaccacaatttatacttatgggagtggctgaagcacttttagagggtgcaaaaatggagtttttctatgatcaag 197  Q
    ||||||||||||||||||||||||   ||||||||| ||||||||||| | || ||||| || ||||||||||| ||||| |||||||||||||| ||||    
T  15779724 gttccattgagcatattcattttggctccacaatttgtacttatgggaatagcagaagccctcttagagggtgccaaaattgagtttttctatgaccaag 15779823  T
Q  198 caccagaaagcatgaagagtcttggaacatcatactcattaactactactggaattggtagttttctcagcacctttcttctctcaacagtttcacatgt 297  Q
    | ||||||||||||||||| ||||| |  || || || ||||||||||| || ||||||||||| || ||||| |||||||||||||||||||||||| |    
T  15779824 ccccagaaagcatgaagagccttgggagttcgtattccttaactactacgggcattggtagtttccttagcacttttcttctctcaacagtttcacatat 15779923  T
Q  298 cactgagaaacacagtcgccgtcgagggtggattttgaataacttgaatgcttctcatcttgattactactatgcatttttggccatactaaatgtcttg 397  Q
    |||  ||||||| |||| |   | ||||||||||||||| ||| | |||||||||||||||||||||||||| ||||||||||| |||||||||| | ||    
T  15779924 cacaaagaaacatagtcac---caagggtggattttgaacaacctaaatgcttctcatcttgattactactacgcatttttggcaatactaaatgccctg 15780020  T
Q  398 aactttgtcttctttgtggttgtttcaaagttctatgtgtcaagagctgaagtttc 453  Q
    |||||  | |||||  || |||| |||||  ||||||| |  ||||||||||||||    
T  15780021 aacttcattttcttcatgattgtctcaaaaatctatgtctacagagctgaagtttc 15780076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 98 - 412
Target Start/End: Original strand, 15737625 - 15737936
Alignment:
Q  98 gttccattgagcatattcattttgctaccacaatttatacttatgggagtggctgaagcacttttagagggtgcaaaaatggagtttttctatgatcaag 197  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||   ||||||||| |  |||||| ||| ||||| ||||| |||||||||||||    
T  15737625 gttccattgagcatattcattttgcttccacaatttatacttatgggaacagctgaagcattcatagaggttgctaaaattgagttcttctatgatcaag 15737724  T
Q  198 caccagaaagcatgaagagtcttggaacatcatactcattaactactactggaattggtagttttctcagcacctttcttctctcaacagtttcacatgt 297  Q
    | ||||||||||||||||||||||| || || || ||||| ||||     || ||||| |||||| | || || |||||||| ||||||||||||||  |    
T  15737725 ctccagaaagcatgaagagtcttggcacttcttattcattgactagcttaggtattggaagttttataagtacttttcttctatcaacagtttcacacat 15737824  T
Q  298 cactgagaaacacagtcgccgtcgagggtggattttgaataacttgaatgcttctcatcttgattactactatgcatttttggccatactaaatgtcttg 397  Q
    ||||||| ||||  ||| |     ||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  15737825 cactgaggaacatggtcac---aaagggtggattttgaataatcttaatgcttctcatcttgattactactatgcatttttggcaatactaaatgtcttg 15737921  T
Q  398 aactttgtcttcttt 412  Q
    |||||| ||||||||    
T  15737922 aactttatcttcttt 15737936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 97 - 412
Target Start/End: Original strand, 15730021 - 15730333
Alignment:
Q  97 agttccattgagcatattcattttgctaccacaatttatacttatgggagtggctgaagcacttttagagggtgcaaaaatggagtttttctatgatcaa 196  Q
    |||||||||||||||||||||||| || || |||||| |||||||||||   ||||| ||| ||||||||| ||| ||||| ||||| ||||||||||||    
T  15730021 agttccattgagcatattcattttactccctcaatttttacttatgggaacagctgatgcatttttagaggttgctaaaattgagttcttctatgatcaa 15730120  T
Q  197 gcaccagaaagcatgaagagtcttggaacatcatactcattaactactactggaattggtagttttctcagcacctttcttctctcaacagtttcacatg 296  Q
    || |||||||||||||||||  | || || || || ||| | ||||     || ||||| | |||| | || || |||||||| ||||||||||||||      
T  15730121 gctccagaaagcatgaagagcttgggcacttcttattcaatgactagcttaggcattggaaattttattagtacttttcttctatcaacagtttcacaca 15730220  T
Q  297 tcactgagaaacacagtcgccgtcgagggtggattttgaataacttgaatgcttctcatcttgattactactatgcatttttggccatactaaatgtctt 396  Q
    |||||||| ||||  ||| |     ||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15730221 tcactgaggaacatggtcacaa---agggtggattttgaataatcttaatgcttctcatcttgattactactatgcatttttggctatactaaatgtctt 15730317  T
Q  397 gaactttgtcttcttt 412  Q
    ||||||| ||||||||    
T  15730318 gaactttatcttcttt 15730333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 96 - 225
Target Start/End: Complemental strand, 33411715 - 33411586
Alignment:
Q  96 aagttccattgagcatattcattttgctaccacaatttatacttatgggagtggctgaagcacttttagagggtgcaaaaatggagtttttctatgatca 195  Q
    ||||||| ||||| || ||||||||||| || || |||||||||||||||   ||||| ||| || |||||| ||| ||||| |||||||||||||||||    
T  33411715 aagttcctttgagtattttcattttgcttcctcagtttatacttatgggaacagctgatgcatttctagaggttgcgaaaatcgagtttttctatgatca 33411616  T
Q  196 agcaccagaaagcatgaagagtcttggaac 225  Q
    ||| |||||||||||||||||| |||||||    
T  33411615 agctccagaaagcatgaagagtattggaac 33411586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 88
Target Start/End: Original strand, 15779616 - 15779693
Alignment:
Q  11 agcatagggttcataatccatatagtgataatgacagttgcatccatgattgaaagacatagacttagtgtggccaaa 88  Q
    |||||||| ||||||||||||||||||||||||| ||||||||   ||  |||||||||||||||   ||||||||||    
T  15779616 agcataggattcataatccatatagtgataatgatagttgcatatttggctgaaagacatagactatttgtggccaaa 15779693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 322 - 378
Target Start/End: Complemental strand, 33411492 - 33411436
Alignment:
Q  322 agggtggattttgaataacttgaatgcttctcatcttgattactactatgcattttt 378  Q
    ||||||||||||||| ||  |||||| |||||||||||||||||||||||| |||||    
T  33411492 agggtggattttgaacaatctgaatgattctcatcttgattactactatgcgttttt 33411436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 39256639 - 39256586
Alignment:
Q  176 atggagtttttctatgatcaagcaccagaaagcatgaagagtcttggaacatca 229  Q
    ||||||||||| |||||||||||||||||| ||||||| ||||||||| |||||    
T  39256639 atggagtttttttatgatcaagcaccagaaggcatgaaaagtcttggagcatca 39256586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 39193647 - 39193595
Alignment:
Q  179 gagtttttctatgatcaagcaccagaaagcatgaagagtcttggaacatcata 231  Q
    ||||| ||||||||||||||||||||| ||||||| ||||| |||||||||||    
T  39193647 gagttcttctatgatcaagcaccagaaggcatgaaaagtctcggaacatcata 39193595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 39223000 - 39222948
Alignment:
Q  179 gagtttttctatgatcaagcaccagaaagcatgaagagtcttggaacatcata 231  Q
    ||||| ||||||||||||||||||||| ||||||| ||||| |||||||||||    
T  39223000 gagttcttctatgatcaagcaccagaaggcatgaaaagtctcggaacatcata 39222948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 39238670 - 39238620
Alignment:
Q  176 atggagtttttctatgatcaagcaccagaaagcatgaagagtcttggaaca 226  Q
    |||||||| ||||| |||||||| ||||||| |||||||||||| ||||||    
T  39238670 atggagttcttctacgatcaagcgccagaaaccatgaagagtctcggaaca 39238620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 39176920 - 39176879
Alignment:
Q  185 ttctatgatcaagcaccagaaagcatgaagagtcttggaaca 226  Q
    ||||||||||||||||||||| ||||||| ||||| ||||||    
T  39176920 ttctatgatcaagcaccagaaggcatgaaaagtctcggaaca 39176879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 232
Target Start/End: Complemental strand, 39259888 - 39259835
Alignment:
Q  179 gagtttttctatgatcaagcaccagaaagcatgaagagtcttggaacatcatac 232  Q
    |||||||| || |||||||| ||||||  |||||| ||||||||||||||||||    
T  39259888 gagtttttttacgatcaagcgccagaatccatgaaaagtcttggaacatcatac 39259835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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