View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10588_low_1 (Length: 278)
Name: NF10588_low_1
Description: NF10588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10588_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 16 - 269
Target Start/End: Complemental strand, 15756072 - 15755822
Alignment:
| Q |
16 |
agaaacttcagctcttgacacatagaactttgaaacaaccacaaagaagacaaagttcaagacatttagtatggccaaaaatgcatagtagtaatcaaga |
115 |
Q |
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| T |
15756072 |
agaaacttcagctcttgacacatagaactttgaaacaaccacaaagaagacaaagttcaagacatttagtatggccaaaaatgcatagtagtaatcaaga |
15755973 |
T |
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| Q |
116 |
tgagaagcattcaagttattcaaaatccaccctcgacggcgactgtgtttctcagtgacatgtgaaactgttgagagaagaaaggtgctgagaaaactac |
215 |
Q |
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| T |
15755972 |
tgagaagcattcaagttattcaaaatccaccctcga---ccaccatgtttctcagtgacatgtgaaactgttgagagaagaaaagtgctgagaaaactac |
15755876 |
T |
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| Q |
216 |
caattccagtagtagttaatgagtatgatgttccaagactcttcatgctctctg |
269 |
Q |
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| T |
15755875 |
caattccagtagtagttaaggaatatgatgttccaagactcttcatgctttctg |
15755822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 34 - 269
Target Start/End: Complemental strand, 15766923 - 15766691
Alignment:
| Q |
34 |
cacatagaactttgaaacaaccacaaagaagacaaagttcaagacatttagtatggccaaaaatgcatagtagtaatcaagatgagaagcattcaagtta |
133 |
Q |
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| T |
15766923 |
cacatagaactttgaaacaaccacaaagaagacaaagtttatgacatttagtatagccaaaaatgcatagtagtaatcaagatgagaagcattcaagtta |
15766824 |
T |
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| Q |
134 |
ttcaaaatccaccctcgacggcgactgtgtttctcagtgacatgtgaaactgttgagagaagaaaggtgctgagaaaactaccaattccagtagtagtta |
233 |
Q |
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| T |
15766823 |
ttcaaaatccaccct---cggcgaccgtgtttctcagtgacatgtgaaactgctgagagaagaaaagtgctgagaaaactaccaattccagtagtagtta |
15766727 |
T |
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| Q |
234 |
atgagtatgatgttccaagactcttcatgctctctg |
269 |
Q |
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| T |
15766726 |
atgagtatgatgttccaaggctcttcatgctttctg |
15766691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 17 - 269
Target Start/End: Complemental strand, 15780076 - 15779827
Alignment:
| Q |
17 |
gaaacttcagctcttgacacatagaactttgaaacaaccacaaagaagacaaagttcaagacatttagtatggccaaaaatgcatagtagtaatcaagat |
116 |
Q |
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|||||||||||||| | ||||||| ||||| |||| || ||||| | ||||||| | |||||||||| ||||||||||| |||||||||||||||| |
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| T |
15780076 |
gaaacttcagctctgtagacatagatttttgagacaatcatgaagaaaatgaagttcagggcatttagtattgccaaaaatgcgtagtagtaatcaagat |
15779977 |
T |
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| Q |
117 |
gagaagcattcaagttattcaaaatccaccctcgacggcgactgtgtttctcagtgacatgtgaaactgttgagagaagaaaggtgctgagaaaactacc |
216 |
Q |
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|||||||||| | ||| ||||||||||||||| || |||| ||||||| |||| |||||||||||||||||||||||| ||||| || |||||||| |
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| T |
15779976 |
gagaagcatttaggttgttcaaaatccaccct---tggtgactatgtttctttgtgatatgtgaaactgttgagagaagaaaagtgctaaggaaactacc |
15779880 |
T |
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| Q |
217 |
aattccagtagtagttaatgagtatgatgttccaagactcttcatgctctctg |
269 |
Q |
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||| || ||||||||||| || || || | ||||| ||||||||||| |||| |
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| T |
15779879 |
aatgcccgtagtagttaaggaatacgaactcccaaggctcttcatgctttctg |
15779827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 58 - 269
Target Start/End: Complemental strand, 15737936 - 15737728
Alignment:
| Q |
58 |
aaagaagacaaagttcaagacatttagtatggccaaaaatgcatagtagtaatcaagatgagaagcattcaagttattcaaaatccaccctcgacggcga |
157 |
Q |
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| T |
15737936 |
aaagaagataaagttcaagacatttagtattgccaaaaatgcatagtagtaatcaagatgagaagcattaagattattcaaaatccaccct---ttgtga |
15737840 |
T |
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| Q |
158 |
ctgtgtttctcagtgacatgtgaaactgttgagagaagaaaggtgctgagaaaactaccaattccagtagtagttaatgagtatgatgttccaagactct |
257 |
Q |
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| T |
15737839 |
ccatgttcctcagtgatgtgtgaaactgttgatagaagaaaagtacttataaaacttccaatacctaagctagtcaatgaataagaagtgccaagactct |
15737740 |
T |
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| Q |
258 |
tcatgctctctg |
269 |
Q |
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||||||| |||| |
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| T |
15737739 |
tcatgctttctg |
15737728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 15730333 - 15730243
Alignment:
| Q |
58 |
aaagaagacaaagttcaagacatttagtatggccaaaaatgcatagtagtaatcaagatgagaagcattcaagttattcaaaatccaccct |
148 |
Q |
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| T |
15730333 |
aaagaagataaagttcaagacatttagtatagccaaaaatgcatagtagtaatcaagatgagaagcattaagattattcaaaatccaccct |
15730243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 92 - 148
Target Start/End: Original strand, 33411436 - 33411492
Alignment:
| Q |
92 |
aaaaatgcatagtagtaatcaagatgagaagcattcaagttattcaaaatccaccct |
148 |
Q |
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||||| |||||||||||||||||||||||| |||||| || ||||||||||||||| |
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| T |
33411436 |
aaaaacgcatagtagtaatcaagatgagaatcattcagattgttcaaaatccaccct |
33411492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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