View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10588_low_2 (Length: 255)
Name: NF10588_low_2
Description: NF10588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10588_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 14 - 244
Target Start/End: Complemental strand, 26506623 - 26506393
Alignment:
| Q |
14 |
caatttcctcgactattctttgttgcacatgtttgtatttgaccaaattcgccataacccactctaatgcagttgaagttgtatctgttcctgcagtgag |
113 |
Q |
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| T |
26506623 |
caatttcctcgactattctttgttgcacatgtttgtatttgaccaaattcgccataacccactctaatgcagttgaagttgtatctgttccggcagtgag |
26506524 |
T |
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| Q |
114 |
aaactccgaacacagcgcaacaagttcatcgtcatcaagctttcgtttctcctcaggcaactccaaattcaacaaagtatcgacgtaacaaatggcacgt |
213 |
Q |
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| T |
26506523 |
aaactccgaacacagcgcaacaagctcatcgtcatcaagctttcgtttctcctcaggcaactccaaattcaacaaagtatcgacgtaacaaatggcacgt |
26506424 |
T |
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| Q |
214 |
tcatgatcaagattatttttattgctttctt |
244 |
Q |
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| T |
26506423 |
tcatgatcaagattatttttattgctttctt |
26506393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 13 - 205
Target Start/End: Complemental strand, 26494579 - 26494387
Alignment:
| Q |
13 |
tcaatttcctcgactattctttgttgcacatgtttgtatttgaccaaattcgccataacccactctaatgcagttgaagttgtatctgttcctgcagtga |
112 |
Q |
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| T |
26494579 |
tcaatttcctccactagcatctgttgcacgtgtttgtctttcaccaaattcgccataacccactctagtgtagttgaagttgtgtcagttcctgcggtga |
26494480 |
T |
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| Q |
113 |
gaaactccgaacacagcgcaacaagttcatcgtcatcaagctttcgtttctcctcaggcaactccaaattcaacaaagtatcgacgtaacaaa |
205 |
Q |
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| T |
26494479 |
gaaactcggaacatagtgcaacaacttcaccttcgttaagcttccgtttctcctcaggtaaccgcaaattcaacaaagtatccacataacaaa |
26494387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 125
Target Start/End: Original strand, 15176740 - 15176810
Alignment:
| Q |
55 |
accaaattcgccataacccactctaatgcagttgaagttgtatctgttcctgcagtgagaaactccgaaca |
125 |
Q |
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| T |
15176740 |
accaaattcgccatgatccattccaatgcagttgaagttgtatctgttcccgcatttagaaactcggaaca |
15176810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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