View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10588_low_3 (Length: 249)
Name: NF10588_low_3
Description: NF10588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10588_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 138 - 236
Target Start/End: Complemental strand, 22462644 - 22462546
Alignment:
| Q |
138 |
ttggtgggtgacatgccatggttcactagaacaaagaagcaaatgatgaagccaaatcaggccactctatcttttatcaaagtacctcatgttgtacct |
236 |
Q |
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| T |
22462644 |
ttggtgggtgacatgccatggttcactagaaaaaaggagcaaatgatgaagccaaatcaagccactctatcttttatcaaagtacctcatgttgtacct |
22462546 |
T |
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Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 22462773 - 22462685
Alignment:
| Q |
9 |
cacagggagctttttctgctaaaactctgccgtttgactaagactcaagaaagctaatgaaaccaaaacccaaacgacagaaggctaat |
97 |
Q |
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| T |
22462773 |
cacagggagctttttctgctcaaactctgccgtttgactaagactcaagaaagctaatgaaaccaaaacctaaacgacagaaggctaat |
22462685 |
T |
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