View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10588_low_8 (Length: 218)
Name: NF10588_low_8
Description: NF10588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10588_low_8 |
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| [»] scaffold1319 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 148 - 201
Target Start/End: Complemental strand, 13319740 - 13319687
Alignment:
| Q |
148 |
tagctcagaagactgggcaccacccaaactaccgttagttagtagttcattgtg |
201 |
Q |
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| T |
13319740 |
tagctcagaagactgggcaccacccaaactaccgttagttagtagttcattgtg |
13319687 |
T |
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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 40 - 79
Target Start/End: Complemental strand, 13319849 - 13319810
Alignment:
| Q |
40 |
acaaaaatataaaaggggaacaaatccctagcgagaagag |
79 |
Q |
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| T |
13319849 |
acaaaaatataaaaggggaacaaatccctagcgagaagag |
13319810 |
T |
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Target: scaffold1319 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1319
Description:
Target: scaffold1319; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 1042 - 1087
Alignment:
| Q |
31 |
caccaaacaacaaaaatataaaag-gggaacaaatccctagcgaga |
75 |
Q |
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| T |
1042 |
caccaaacaacaaaaatataaaagaggaaacaaatccctagcgaga |
1087 |
T |
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