View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10589_low_1 (Length: 461)
Name: NF10589_low_1
Description: NF10589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10589_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 166 - 398
Target Start/End: Original strand, 50326187 - 50326419
Alignment:
| Q |
166 |
tattacatgtgcttgagtaattatttattctgttgcagaaaaatagtgcagttgctggagcaatcactggtgcagcacttgcatgtacatcagataacac |
265 |
Q |
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| T |
50326187 |
tattacatgtgcttgagtaattatttattctgttgcagaaaaatagtgcagttgctggagcaatcactggagcagcacttgcatgtacatcagataacac |
50326286 |
T |
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| Q |
266 |
ttctcatgaacagattgcgcaatgtgctattaccggagctgcgatttcaactgctgcaaatcttctaacagggatattctaaacctgttgggatttttag |
365 |
Q |
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| T |
50326287 |
atctcatgaacagattgcgcaatgtgctattaccggagctgcgatttcaactgctgcaaatcttctaacagggatattctaaacctgttgggatttttag |
50326386 |
T |
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| Q |
366 |
ccttgtttttaatcttccaatttgtgacattta |
398 |
Q |
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| T |
50326387 |
ccttgtttttaatcttccaatttgtgacattta |
50326419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 50326074 - 50326180
Alignment:
| Q |
20 |
ctcgtggtactcatgactgggtaatgttctaaataactagatttatgataca-ttttttgtaaaaggaacaagggcaagcctctcttcatcactggtgtg |
118 |
Q |
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| T |
50326074 |
ctcgtggtactcatgactgggtaatgttctaaataactagatttatgatacatttttttgtaaaaggaacaagggcaagcctctcttcatcactggtgtg |
50326173 |
T |
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| Q |
119 |
aataata |
125 |
Q |
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||||||| |
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| T |
50326174 |
aataata |
50326180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 393 - 449
Target Start/End: Original strand, 50326457 - 50326513
Alignment:
| Q |
393 |
catttagcaactatttctttctgaatttgtagttctctttttcaaatgtgttgtctc |
449 |
Q |
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| T |
50326457 |
catttagcaactatttctttctgaatttgtagttctctttttcaaatgtgttgtctc |
50326513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 199 - 348
Target Start/End: Complemental strand, 13202440 - 13202291
Alignment:
| Q |
199 |
tgcagaaaaatagtgcagttgctggagcaatcactggtgcagcacttgcatgtacatcagataacacttctcatgaacagattgcgcaatgtgctattac |
298 |
Q |
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| T |
13202440 |
tgcagaaaaacagtgcagttgctggagcaatcaccggggctacccttgcacttacattggaagactccacacatgaacatgttgttcaatgtgctatcac |
13202341 |
T |
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| Q |
299 |
cggagctgcgatttcaactgctgcaaatcttctaacagggatattctaaa |
348 |
Q |
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| T |
13202340 |
tggagctgcaatctcaactgttgcaaatcttctcaaagggattttctaaa |
13202291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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