View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10590_1 (Length: 450)
Name: NF10590_1
Description: NF10590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10590_1 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 47 - 303
Target Start/End: Complemental strand, 10426932 - 10426677
Alignment:
| Q |
47 |
taggttcattgctaccttcttaacatgtgacttgatgcactaatcttatcttaataaatataagctgcatcgtaaatgtaagggaagttgaaaatatcct |
146 |
Q |
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| T |
10426932 |
taggttcattgctaccttcttaacatgtgacttgatgcactaatcttatcttaataaatataagctgcatcgtaaatgtaagggaagttgaaaatatcct |
10426833 |
T |
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| Q |
147 |
tggtagcttctcctatgtgcggctgaagacttatctgatgcatatttccaaatcctatcaacaccattgtatatttattaattcagcacattggaattga |
246 |
Q |
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| T |
10426832 |
tggtagcttctcctttgcgcggctgaagacttatctgatgcatatttccaaatcctatcaacaccattgtatatttattatttcagcacattggaattga |
10426733 |
T |
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| Q |
247 |
tcaatttgaatgatacacatgcctccaaggtcttatctagaatttacagggcttgct |
303 |
Q |
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| T |
10426732 |
tcaatttgaatgatacacatgcct-caaggtcttatctagaatttacagagcttgct |
10426677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 334 - 431
Target Start/End: Complemental strand, 10426336 - 10426239
Alignment:
| Q |
334 |
ttaattcaacgcttcatcgtagtatctcggttctccacattattctctccttttcttctcacctatcccattttcccttatccttccaccctgttttt |
431 |
Q |
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| T |
10426336 |
ttaattcaacgcttcatcgtaatatctccgttctccacattattctctccttttcttctcacctatcccattttcccttatccttccaccctattttt |
10426239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 133; Significance: 5e-69; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 81 - 282
Target Start/End: Original strand, 4410741 - 4410938
Alignment:
| Q |
81 |
atgcactaatcttatcttaataaatataagctgcatcgtaaatgtaagggaagttgaaaatatccttggtagcttctcctatgtgcggctgaagacttat |
180 |
Q |
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| T |
4410741 |
atgcgctaatcttatcttaataaacataagttgcatcgtaaatgtaaggaaagttgaaaatatccttggtagcttctcctttgtgca----atgactgat |
4410836 |
T |
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| Q |
181 |
ctgatgcatatttccaaatcctatcaacaccattgtatatttattaattcagcacattggaattgatcaatttgaatgatacacatgcctccaaggtctt |
280 |
Q |
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| T |
4410837 |
ctgatgcatattttcaaatcctatcagcaccattgtatattaattaattcagcacattggaattgatcaatgtgaatggtacacatgcctccaaggtctt |
4410936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 79
Target Start/End: Original strand, 4407898 - 4407926
Alignment:
| Q |
51 |
ttcattgctaccttcttaacatgtgactt |
79 |
Q |
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| T |
4407898 |
ttcattgctaccttcttaacatgtgactt |
4407926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 308 - 431
Target Start/End: Original strand, 24819406 - 24819530
Alignment:
| Q |
308 |
gctattcttttcgtctttgttcctttttaattcaacgcttcatcgtagtatctcggttctccacattattctctccttttcttctcac-ctatcccattt |
406 |
Q |
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|||||||||||| ||| | ||| ||||||||||||||| ||||||| ||| | ||||||||||||| |||| ||||| |||||| ||||| ||| | |
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| T |
24819406 |
gctattcttttcctctctattcaattttaattcaacgctccatcgtaatatgttcagtctccacattattttctctttttcctctcactctatcgcatct |
24819505 |
T |
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| Q |
407 |
tcccttatccttccaccctgttttt |
431 |
Q |
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||||| ||||||||||||| ||||| |
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| T |
24819506 |
tccctcatccttccaccctattttt |
24819530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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