View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10590_2 (Length: 449)
Name: NF10590_2
Description: NF10590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10590_2 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 57 - 449
Target Start/End: Original strand, 40022984 - 40023376
Alignment:
| Q |
57 |
aagcccttcctcagttgaacataaggaacttgtttaggagtattcataaaatagaatgttgtatctctctgcttaagtgaactgttatgtttcaccgcga |
156 |
Q |
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| T |
40022984 |
aagcccttcctcagttgaacatatggaacttgtttaggagtattcataaaatagaatgttgtatctccctgcttaagtgaactgttatgtttcaccgcga |
40023083 |
T |
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| Q |
157 |
tggctagatgtttcttattattacccccattgcaagtgttttccaccggcttctcctccatctcattgcctattcttaagtgtaacttctcacccttacg |
256 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||| |
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| T |
40023084 |
tggctagatgtttcttattattacccccattgcaagtgttttccaccggcttctcctccatctcaatacccattcttaagtgtaacttctcacccttaca |
40023183 |
T |
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| Q |
257 |
tggccatggttgtttacatagatcctgata----cttccattttttgttaaagcaatgataaacctacacgatgtccaagcattcattaatgtctcaact |
352 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
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| T |
40023184 |
tggccatggttgtttacatagatcctgatactcccttccattttcagttaaagcaatgacaaacctacacgatgtccaagcattcattaatgtctcgact |
40023283 |
T |
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| Q |
353 |
agaagcctgattattattagcacacattttggttcatgtgtgtcgtcgtaaccctagctcccctttgtcaccaaaatatgatcgatggtagcctatg |
449 |
Q |
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||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40023284 |
agaagcctg---attattaggacacattttggttcatgtgtgtcgtcgtaaccctagctcccctttgtcaccaaaata-gatcgatggtagcctatg |
40023376 |
T |
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