View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10590_4 (Length: 388)
Name: NF10590_4
Description: NF10590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10590_4 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 6 - 388
Target Start/End: Original strand, 4676502 - 4676884
Alignment:
| Q |
6 |
aggagcagagaccaaaagaaactgaagatcattaacccattccaatgtttgaatcgttcctctccaagcaatcacaatatcccttctccccaacacatct |
105 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4676502 |
aggagcagaaaccaaaagaaactgaagatcattaacccattccaatgtttgaatcgttcctctccaagcaatcacaatatcccttctccccaacacatct |
4676601 |
T |
|
| Q |
106 |
ttcccttcatcattagccacagcaacaaatccaatccaatttgattccttactccaagcttctctagataaagactttataataaacgcttacggaacat |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4676602 |
ttcccttcatcattagccacagcaacaaatccaatccaatttgattccttactccaagcttctctagataaagactttataataaacgcttccggaacat |
4676701 |
T |
|
| Q |
206 |
tgatttcggaagtcgcataaataaattttgtcacagaatatttaaaaggatttccattttctnnnnnnnctttagaaaagaaatcattctttgcatacct |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4676702 |
tgatttcggaagtcgcataaataaattttgtcacagaatatttaaaaggatttccattttctaaaaaaactttagaaaagaaatcattctttgcatacct |
4676801 |
T |
|
| Q |
306 |
acaactacctgcaaactttgatgctttctctgtgttgaaagcatcgtatgttgcttgtgccatttcaccatagtggattatgt |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4676802 |
acaactacctgcaaactttgatgctttctctgtgttgaaagcatcgtatgttgcttgtgccatttcaccatagtggattatgt |
4676884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University