View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10590_7 (Length: 300)
Name: NF10590_7
Description: NF10590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10590_7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 7 - 300
Target Start/End: Complemental strand, 31160560 - 31160260
Alignment:
| Q |
7 |
tgagaagaagggtgatatttatagccctctatgtgcctgatttgtaatgacttaagcctcaagtaatgagggtaattaaagtctttctttcgaactctag |
106 |
Q |
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||||||||||||||||||||||||||||||||| || |||||||| || |||||||||||| ||||||||||| |||||||||||||||| | |||||| |
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| T |
31160560 |
tgagaagaagggtgatatttatagccctctatgagcttgatttgtcgtgccttaagcctcaaataatgagggtatttaaagtctttctttcaagctctag |
31160461 |
T |
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| Q |
107 |
atgcttctagaagttactatttagcattctccttaacttatgaacttgtttttactaaatttgcttataacaccgcaacaattattttctcaccttctgt |
206 |
Q |
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| T |
31160460 |
aggcttctaaaagttactatttagcattttccttaacttatgaacttgtttttactaaatttgcttataacaccgcaacaattattttctcaccttctgt |
31160361 |
T |
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| Q |
207 |
tcagtttgcttgtggtt-------ttggctttgaatttacaatgtgcatgccagcttttcagctgccaaagaagcaggtatagtttgttatctgttcttt |
299 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31160360 |
tcagtttgcttgtggttttgggttttggctttgaatttacaatgtgcatgccagcttttcagctgccaaagaagcaggtatagtttgttatctgttcttt |
31160261 |
T |
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| Q |
300 |
t |
300 |
Q |
| |
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| |
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| T |
31160260 |
t |
31160260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 121
Target Start/End: Original strand, 24909153 - 24909259
Alignment:
| Q |
14 |
aagggtgatatttatagccctctatgtgcctgatttgtaatgacttaagcctcaagtaatgagggtaattaaagtctttctttcgaactctagatgcttc |
113 |
Q |
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| T |
24909153 |
aagggtggtatttatagccctttgtgggcctgttttatcgtgacttaagcttcaagtaatgagggtactt-aagtctttctgccgagctctagaggcttc |
24909251 |
T |
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| Q |
114 |
tagaagtt |
121 |
Q |
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|||||||| |
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| T |
24909252 |
tagaagtt |
24909259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 121
Target Start/End: Original strand, 24911374 - 24911480
Alignment:
| Q |
14 |
aagggtgatatttatagccctctatgtgcctgatttgtaatgacttaagcctcaagtaatgagggtaattaaagtctttctttcgaactctagatgcttc |
113 |
Q |
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||||||| ||||||||||||| | || ||||| ||| | |||||||||| |||||||||||||||| || |||||||||| ||| ||||||| ||||| |
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| T |
24911374 |
aagggtggtatttatagccctttgtgggcctgttttatcgtgacttaagcttcaagtaatgagggtactt-aagtctttctgccgagctctagaggcttc |
24911472 |
T |
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| Q |
114 |
tagaagtt |
121 |
Q |
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|||||||| |
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| T |
24911473 |
tagaagtt |
24911480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 119
Target Start/End: Original strand, 14082787 - 14082890
Alignment:
| Q |
14 |
aagggtgatatttatagccctctatgtgcctgatttgtaatgacttaagcctcaagtaatgagggtaattaaagtctttctttcgaactctagatgcttc |
113 |
Q |
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||||||||||||||||||||| ||| || ||||| ||| ||||||||||| ||||||||||||||| || |||| ||||| | | ||||||| ||||| |
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| T |
14082787 |
aagggtgatatttatagccctttatatgtctgatctgtcgtgacttaagcc-caagtaatgagggtactt-aagtttttctgccaagctctagaggcttc |
14082884 |
T |
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| Q |
114 |
tagaag |
119 |
Q |
| |
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|||||| |
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| T |
14082885 |
tagaag |
14082890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 112
Target Start/End: Original strand, 14654302 - 14654359
Alignment:
| Q |
54 |
tgacttaagcctcaagtaatgagggtaattaaagtctttctttcgaactctagatgctt |
112 |
Q |
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||||||||||||||||||||||||||| || |||||||||| ||| ||||||| |||| |
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| T |
14654302 |
tgacttaagcctcaagtaatgagggtactt-aagtctttctgccgagctctagaggctt |
14654359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 14 - 119
Target Start/End: Original strand, 12697261 - 12697365
Alignment:
| Q |
14 |
aagggtgatatttatagccctctatgtgcctgatttgtaatgacttaagcctcaagtaatgagggtaattaaagtctttctttcgaactctagatgcttc |
113 |
Q |
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||||||| |||||||||||||||||| || |||||| ||||||||||| ||||||||||||| | ||||| ||||||| ||| ||||||| ||||| |
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| T |
12697261 |
aagggtggtatttatagccctctatgggcttgatttcctgtgacttaagccccaagtaatgagggcatttaaa-tctttctgccgagctctagaggcttc |
12697359 |
T |
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| Q |
114 |
tagaag |
119 |
Q |
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|||||| |
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| T |
12697360 |
tagaag |
12697365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 117
Target Start/End: Original strand, 9375568 - 9375670
Alignment:
| Q |
14 |
aagggtgatatttatagccctctatgtgcctgatttgtaatgacttaagcctcaagtaatgagggtaattaaagtctttctttcgaactctagatgcttc |
113 |
Q |
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||||||| |||||||||||||||||| ||||| | | ||||||||||| ||||||||||||| ||| |||||||||| || ||||||||| ||||| |
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| T |
9375568 |
aagggtggtatttatagccctctatggacctgaactctcgtgacttaagccccaagtaatgaggg-catttaagtctttctatccaactctagaggcttc |
9375666 |
T |
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| Q |
114 |
taga |
117 |
Q |
| |
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|||| |
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| T |
9375667 |
taga |
9375670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 9161183 - 9161087
Alignment:
| Q |
22 |
tatttatagccctctatgtgcctgatttgtaatgacttaagcctcaagtaatgagggtaattaaagtctttctttcgaactctagatgcttctagaag |
119 |
Q |
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|||||||||||||||| | ||||||| ||| |||| |||||||||||||| ||||||| || |||||||| | ||| ||||||| ||||||||||| |
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| T |
9161183 |
tatttatagccctctaggggcctgatctgtcgtgacataagcctcaagtaacgagggtactt-aagtctttatgccgagctctagacgcttctagaag |
9161087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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