View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10590_high_1 (Length: 567)

Name: NF10590_high_1
Description: NF10590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10590_high_1
NF10590_high_1
[»] chr7 (20 HSPs)
chr7 (1-304)||(24044772-24045076)
chr7 (407-537)||(24044598-24044726)
chr7 (310-363)||(28110019-28110072)
chr7 (268-312)||(19426579-19426623)
chr7 (43-79)||(24044726-24044762)
chr7 (272-312)||(33223557-33223597)
chr7 (269-305)||(41080126-41080162)
chr7 (268-305)||(4971289-4971326)
chr7 (268-305)||(12141898-12141935)
chr7 (268-305)||(24700120-24700157)
chr7 (268-305)||(27164872-27164909)
chr7 (268-305)||(37856189-37856226)
chr7 (268-305)||(41985124-41985161)
chr7 (269-305)||(2347094-2347130)
chr7 (269-305)||(29162314-29162350)
chr7 (268-312)||(32919008-32919052)
chr7 (269-305)||(33050183-33050219)
chr7 (268-312)||(38096467-38096511)
chr7 (270-302)||(38218378-38218410)
chr7 (269-305)||(44175545-44175581)
[»] chr6 (13 HSPs)
chr6 (268-312)||(15722531-15722575)
chr6 (268-312)||(30714679-30714723)
chr6 (268-305)||(3180027-3180064)
chr6 (268-305)||(3339534-3339571)
chr6 (310-363)||(9188900-9188953)
chr6 (310-363)||(12044394-12044447)
chr6 (268-305)||(30945822-30945859)
chr6 (269-305)||(7611495-7611531)
chr6 (268-312)||(9954547-9954591)
chr6 (268-312)||(11785354-11785398)
chr6 (268-312)||(22492055-22492099)
chr6 (268-312)||(28965868-28965912)
chr6 (307-363)||(30733070-30733126)
[»] chr4 (31 HSPs)
chr4 (268-312)||(9162065-9162109)
chr4 (310-363)||(52456883-52456936)
chr4 (269-312)||(169530-169573)
chr4 (269-312)||(15596396-15596439)
chr4 (269-308)||(30042134-30042173)
chr4 (269-312)||(39010165-39010208)
chr4 (268-310)||(51717312-51717354)
chr4 (268-305)||(3222988-3223025)
chr4 (310-363)||(9827939-9827992)
chr4 (268-305)||(15638160-15638197)
chr4 (268-305)||(23094375-23094412)
chr4 (310-363)||(26440727-26440780)
chr4 (268-305)||(31221412-31221449)
chr4 (268-305)||(38864771-38864808)
chr4 (268-305)||(41262653-41262690)
chr4 (268-305)||(44368237-44368274)
chr4 (310-363)||(45274327-45274380)
chr4 (268-297)||(48783809-48783838)
chr4 (268-305)||(51359825-51359862)
chr4 (268-305)||(54036553-54036590)
chr4 (310-363)||(54801060-54801113)
chr4 (269-305)||(3078943-3078979)
chr4 (268-312)||(4896528-4896572)
chr4 (268-312)||(6290461-6290505)
chr4 (269-305)||(9032780-9032816)
chr4 (269-305)||(12387689-12387725)
chr4 (269-305)||(32365691-32365727)
chr4 (268-312)||(34116568-34116612)
chr4 (268-304)||(34259814-34259850)
chr4 (268-312)||(47998593-47998637)
chr4 (268-312)||(51296217-51296261)
[»] chr8 (21 HSPs)
chr8 (269-312)||(7596919-7596962)
chr8 (269-312)||(21273738-21273781)
chr8 (268-305)||(36064029-36064066)
chr8 (268-312)||(11223887-11223931)
chr8 (268-312)||(22852867-22852911)
chr8 (270-305)||(6806909-6806944)
chr8 (277-308)||(24319348-24319379)
chr8 (272-305)||(14710917-14710950)
chr8 (268-305)||(17775464-17775501)
chr8 (268-305)||(40413373-40413410)
chr8 (268-305)||(42443103-42443140)
chr8 (336-413)||(43873592-43873672)
chr8 (269-305)||(13884195-13884231)
chr8 (268-312)||(26294188-26294232)
chr8 (268-312)||(26307445-26307489)
chr8 (269-305)||(30112835-30112871)
chr8 (268-312)||(34970206-34970250)
chr8 (269-305)||(38844825-38844861)
chr8 (268-312)||(39021471-39021515)
chr8 (270-310)||(39719278-39719318)
chr8 (268-312)||(45101395-45101439)
[»] chr2 (12 HSPs)
chr2 (268-305)||(22353199-22353236)
chr2 (310-363)||(17999808-17999861)
chr2 (268-305)||(27307266-27307303)
chr2 (268-305)||(29795446-29795483)
chr2 (268-305)||(36909878-36909915)
chr2 (269-305)||(3196122-3196158)
chr2 (268-312)||(4738600-4738644)
chr2 (268-312)||(11229349-11229393)
chr2 (268-312)||(18373846-18373890)
chr2 (269-305)||(21805821-21805857)
chr2 (268-312)||(31296873-31296917)
chr2 (268-312)||(33296099-33296143)
[»] chr1 (21 HSPs)
chr1 (268-305)||(50797790-50797827)
chr1 (269-305)||(16836139-16836175)
chr1 (268-307)||(40612113-40612152)
chr1 (270-305)||(52714979-52715014)
chr1 (268-302)||(44517988-44518022)
chr1 (268-305)||(1690445-1690482)
chr1 (268-305)||(9011644-9011681)
chr1 (268-305)||(19442505-19442542)
chr1 (268-305)||(27687543-27687580)
chr1 (268-305)||(40596078-40596115)
chr1 (268-305)||(42256459-42256496)
chr1 (268-312)||(8934624-8934668)
chr1 (268-312)||(11812386-11812430)
chr1 (268-312)||(31427985-31428029)
chr1 (268-312)||(39669805-39669849)
chr1 (269-305)||(40238438-40238474)
chr1 (269-305)||(41507218-41507254)
chr1 (268-312)||(44672058-44672102)
chr1 (268-312)||(50226907-50226951)
chr1 (269-305)||(50528092-50528128)
chr1 (268-312)||(52669796-52669840)
[»] scaffold0592 (1 HSPs)
scaffold0592 (268-308)||(8339-8379)
[»] chr5 (17 HSPs)
chr5 (268-312)||(26660439-26660483)
chr5 (268-312)||(26932031-26932075)
chr5 (269-305)||(27440479-27440515)
chr5 (268-312)||(36713206-36713250)
chr5 (269-312)||(19127124-19127167)
chr5 (263-312)||(3771034-3771083)
chr5 (268-305)||(3960204-3960241)
chr5 (268-305)||(14914371-14914408)
chr5 (269-310)||(42699057-42699098)
chr5 (269-305)||(3109622-3109658)
chr5 (310-363)||(10469901-10469956)
chr5 (268-312)||(11768018-11768062)
chr5 (268-312)||(14323996-14324040)
chr5 (269-305)||(16143390-16143426)
chr5 (269-305)||(17063865-17063901)
chr5 (268-312)||(23991162-23991206)
chr5 (268-312)||(38500942-38500986)
[»] chr3 (22 HSPs)
chr3 (268-312)||(48945846-48945890)
chr3 (268-312)||(55344324-55344368)
chr3 (268-307)||(3958051-3958090)
chr3 (269-312)||(20380917-20380960)
chr3 (270-312)||(31206879-31206921)
chr3 (268-305)||(7249-7286)
chr3 (268-305)||(1765403-1765440)
chr3 (268-305)||(8254026-8254063)
chr3 (268-305)||(34021498-34021535)
chr3 (268-305)||(35074125-35074162)
chr3 (268-305)||(43169777-43169814)
chr3 (268-305)||(47683800-47683837)
chr3 (268-305)||(48405409-48405446)
chr3 (268-305)||(49196695-49196732)
chr3 (268-305)||(52454129-52454166)
chr3 (269-305)||(462436-462472)
chr3 (269-305)||(11327108-11327144)
chr3 (268-312)||(18169156-18169200)
chr3 (269-305)||(23163192-23163228)
chr3 (268-312)||(30796642-30796686)
chr3 (310-362)||(34733248-34733300)
chr3 (268-312)||(43333698-43333742)
[»] scaffold0011 (1 HSPs)
scaffold0011 (268-312)||(219692-219736)


Alignment Details
Target: chr7 (Bit Score: 184; Significance: 3e-99; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 24045076 - 24044772
Alignment:
Q  1 ctctatattagtccctcaactatataccagagactaaattaatcttccaaataaaaatgttaaggactgatttgagtattg-nnnnnnngttaaagacta 99  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||        |||||||||||    
T  24045076 ctctatattagtccctcaactatataccagagactaaattagtcttccaaataaaaatgttaaggactgatttgagtattgttttttttgttaaagacta 24044977  T
Q  100 cattaaattttgagacaaaattgtgtctctactcttattattttgagtataaaattaaagatga--ctctaatnnnnnnnngatattgtttaaaacataa 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||        |||||||||||||||||||    
T  24044976 cattaaattttgagacaaaattgtgtctctactcttattattttgagtatacaattaaagatgactctctaat-aaaaaaagatattgtttaaaacataa 24044878  T
Q  198 atatgcttttaaacacccaaaagtttataaatttatccctttgnnnnnnnagagaaacttagctgagttcagagaaatcatatttgtacaatcattttgt 297  Q
    ||||||||||||||||| |||||||||||||||||||||||||       ||||||||||||||||||| | |||||| ||||||||||||| |||||||    
T  24044877 atatgcttttaaacaccgaaaagtttataaatttatccctttg-ttttttagagaaacttagctgagtttatagaaatgatatttgtacaattattttgt 24044779  T
Q  298 gacaact 304  Q
    |||||||    
T  24044778 gacaact 24044772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 407 - 537
Target Start/End: Complemental strand, 24044726 - 24044598
Alignment:
Q  407 actactcctgagtttaactctttagaatctagtatagaatgattcttcgacacagcttttgttatctccttcgtcaatgcttgtaatattctgaagttgt 506  Q
    |||||||| ||||||||| |||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  24044726 actactccagagtttaaccctttagaatct--tatagaatgattcttcgacacagcttttgtcatctccttcgtcaatgcttgtaatattctgaagttgt 24044629  T
Q  507 tcacactaaatggtcatcaaaggaatattga 537  Q
    ||||| |||||||||||||||||||| ||||    
T  24044628 tcacagtaaatggtcatcaaaggaatgttga 24044598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 310 - 363
Target Start/End: Original strand, 28110019 - 28110072
Alignment:
Q  310 acattatatttttattctatctaccattttctctcttcattatttttgaccaat 363  Q
    |||||||||||||||||| |||  |||||||||||| |||| ||||||||||||    
T  28110019 acattatatttttattctctctttcattttctctctccattgtttttgaccaat 28110072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 19426579 - 19426623
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    |||||||| |||||||||||| |||||||||||||||| ||||||    
T  19426579 agagaaatgatatttgtacaaccattttgtgacaactttttgaca 19426623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 24044726 - 24044762
Alignment:
Q  43 tcttccaaataaaaatgttaaggactgatttgagtat 79  Q
    ||||||||||||||||||||||||||||| |||||||    
T  24044726 tcttccaaataaaaatgttaaggactgatgtgagtat 24044762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 33223597 - 33223557
Alignment:
Q  272 aaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    |||| |||||||||||| |||||||||||||||||||||||    
T  33223597 aaatgatatttgtacaaccattttgtgacaacttcttgaca 33223557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 305
Target Start/End: Original strand, 41080126 - 41080162
Alignment:
Q  269 gagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    ||||||| |||||||||||||||||||||||||||||    
T  41080126 gagaaatgatatttgtacaatcattttgtgacaactt 41080162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Original strand, 4971289 - 4971326
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  4971289 agagaaatgatatttgtacaaccattttgtgacaactt 4971326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Original strand, 12141898 - 12141935
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  12141898 agagaaatcatatttgtacaaccattttgtgataactt 12141935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Original strand, 24700120 - 24700157
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  24700120 agagaaatgatatttgtacaatcattttgtaacaactt 24700157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Complemental strand, 27164909 - 27164872
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  27164909 agagaaatgatatttgtacaatcaatttgtgacaactt 27164872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Complemental strand, 37856226 - 37856189
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  37856226 agagaaatgatatttgtacaaccattttgtgacaactt 37856189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Complemental strand, 41985161 - 41985124
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  41985161 agagaaatgatatttgtacaatcaatttgtgacaactt 41985124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 305
Target Start/End: Complemental strand, 2347130 - 2347094
Alignment:
Q  269 gagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  2347130 gagaaatgatatttgtacaaccattttgtgacaactt 2347094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 305
Target Start/End: Complemental strand, 29162350 - 29162314
Alignment:
Q  269 gagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  29162350 gagaaatgatatttgtacaatcaatttgtgacaactt 29162314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 32919052 - 32919008
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    |||||||| |||||| ||||||||||||||||||| || ||||||    
T  32919052 agagaaatgatatttatacaatcattttgtgacaattttttgaca 32919008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 305
Target Start/End: Original strand, 33050183 - 33050219
Alignment:
Q  269 gagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  33050183 gagaaatgatatttgtacaaccattttgtgacaactt 33050219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 38096511 - 38096467
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    |||||||| |||||||||||| ||||||||||||| || ||||||    
T  38096511 agagaaataatatttgtacaaccattttgtgacaattttttgaca 38096467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 270 - 302
Target Start/End: Complemental strand, 38218410 - 38218378
Alignment:
Q  270 agaaatcatatttgtacaatcattttgtgacaa 302  Q
    |||||| ||||||||||||||||||||||||||    
T  38218410 agaaatgatatttgtacaatcattttgtgacaa 38218378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 305
Target Start/End: Original strand, 44175545 - 44175581
Alignment:
Q  269 gagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    ||||||| ||||||||||||||||||||||| |||||    
T  44175545 gagaaataatatttgtacaatcattttgtgataactt 44175581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 15722575 - 15722531
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||    
T  15722575 agagaaatgatatttgtacaatcattttgtgacaactttttgaca 15722531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 30714679 - 30714723
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    |||||||| ||||||||||||||||||||||||| ||| ||||||    
T  30714679 agagaaatgatatttgtacaatcattttgtgacagctttttgaca 30714723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Complemental strand, 3180064 - 3180027
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    |||||||| ||||||||||||||||||| |||||||||    
T  3180064 agagaaatgatatttgtacaatcattttttgacaactt 3180027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Complemental strand, 3339571 - 3339534
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  3339571 agagaaatgatatttgtacaaccattttgtgacaactt 3339534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 363
Target Start/End: Complemental strand, 9188953 - 9188900
Alignment:
Q  310 acattatatttttattctatctaccattttctctcttcattatttttgaccaat 363  Q
    |||||||||| ||| ||| ||| || |||||||||| |||||||||||||||||    
T  9188953 acattatattcttactctctcttcctttttctctctccattatttttgaccaat 9188900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 363
Target Start/End: Original strand, 12044394 - 12044447
Alignment:
Q  310 acattatatttttattctatctaccattttctctcttcattatttttgaccaat 363  Q
    |||||||||||||| ||| ||| || |||||||||| |||| ||||||||||||    
T  12044394 acattatatttttactctctcttcctttttctctctccattgtttttgaccaat 12044447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Original strand, 30945822 - 30945859
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  30945822 agagaaatgatatttatacaatcattttgtgacaactt 30945859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 305
Target Start/End: Original strand, 7611495 - 7611531
Alignment:
Q  269 gagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  7611495 gagaaatgatatttgaacaatcattttgtgacaactt 7611531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 9954547 - 9954591
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    |||||||| |||||||||||| || ||||||||||||| ||||||    
T  9954547 agagaaatgatatttgtacaaccaatttgtgacaactttttgaca 9954591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 11785354 - 11785398
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    |||||||| |||||||||||| ||||||||||||| || ||||||    
T  11785354 agagaaatgatatttgtacaaccattttgtgacaattttttgaca 11785398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 22492099 - 22492055
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    |||||||| |||| ||||||| |||||||||| ||||||||||||    
T  22492099 agagaaatgatatatgtacaaccattttgtgataacttcttgaca 22492055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 28965912 - 28965868
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    |||||||| |||||||||||| |||||||| ||||||| ||||||    
T  28965912 agagaaatgatatttgtacaaccattttgttacaactttttgaca 28965868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 307 - 363
Target Start/End: Original strand, 30733070 - 30733126
Alignment:
Q  307 ttgacattatatttttattctatctaccattttctctcttcattatttttgaccaat 363  Q
    ||||||||||||||||||||| ||| |  ||||||||||  |||| |||||||||||    
T  30733070 ttgacattatatttttattctctcttcatttttctctctctattacttttgaccaat 30733126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 9162065 - 9162109
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||    
T  9162065 agagaaatgatatttgtacaatcattttgtgacaactttttgaca 9162109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 310 - 363
Target Start/End: Complemental strand, 52456936 - 52456883
Alignment:
Q  310 acattatatttttattctatctaccattttctctcttcattatttttgaccaat 363  Q
    |||||||||||||| ||| ||| || |||||||||| |||||||||||||||||    
T  52456936 acattatatttttactctctcttcctttttctctctacattatttttgaccaat 52456883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 312
Target Start/End: Complemental strand, 169573 - 169530
Alignment:
Q  269 gagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    ||||||| |||||||||||| |||||||||||||||| ||||||    
T  169573 gagaaatgatatttgtacaaccattttgtgacaactttttgaca 169530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 312
Target Start/End: Original strand, 15596396 - 15596439
Alignment:
Q  269 gagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    ||||||| |||||||||||| || ||||||||||||||||||||    
T  15596396 gagaaatgatatttgtacaaccactttgtgacaacttcttgaca 15596439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 308
Target Start/End: Original strand, 30042134 - 30042173
Alignment:
Q  269 gagaaatcatatttgtacaatcattttgtgacaacttctt 308  Q
    ||||||| |||||||||||| |||||||||||||||||||    
T  30042134 gagaaatgatatttgtacaaccattttgtgacaacttctt 30042173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 312
Target Start/End: Complemental strand, 39010208 - 39010165
Alignment:
Q  269 gagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    ||||||| |||||||||||| |||||||||||||||| ||||||    
T  39010208 gagaaatgatatttgtacaaccattttgtgacaactttttgaca 39010165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 268 - 310
Target Start/End: Complemental strand, 51717354 - 51717312
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaacttcttga 310  Q
    |||||||| |||||||||||| || ||||||||||||||||||    
T  51717354 agagaaatgatatttgtacaaccaatttgtgacaacttcttga 51717312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Original strand, 3222988 - 3223025
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  3222988 agagaaatgatatttgtacaatcaatttgtgacaactt 3223025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 363
Target Start/End: Complemental strand, 9827992 - 9827939
Alignment:
Q  310 acattatatttttattctatctaccattttctctcttcattatttttgaccaat 363  Q
    ||||||| |||||||||| |||| | |||||||||| |||| ||||||||||||    
T  9827992 acattatgtttttattctctctatctttttctctctccattgtttttgaccaat 9827939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Original strand, 15638160 - 15638197
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    |||||||| ||||||||||||||||||| |||||||||    
T  15638160 agagaaatgatatttgtacaatcattttttgacaactt 15638197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Original strand, 23094375 - 23094412
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    |||||||| ||||||||||||||||||||||| |||||    
T  23094375 agagaaatgatatttgtacaatcattttgtgataactt 23094412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 363
Target Start/End: Original strand, 26440727 - 26440780
Alignment:
Q  310 acattatatttttattctatctaccattttctctcttcattatttttgaccaat 363  Q
    |||||||||||||| ||| ||| || |||||||||| |||| ||||||||||||    
T  26440727 acattatatttttactctctcttcctttttctctctccattgtttttgaccaat 26440780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Original strand, 31221412 - 31221449
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  31221412 agagaaatgatatttgtacaatcaatttgtgacaactt 31221449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Complemental strand, 38864808 - 38864771
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  38864808 agagaaatgatatttgtacaattattttgtgacaactt 38864771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Complemental strand, 41262690 - 41262653
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  41262690 agagaaatgatatttgtacaattattttgtgacaactt 41262653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Complemental strand, 44368274 - 44368237
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  44368274 agagaaatgatatttgtacaatcaatttgtgacaactt 44368237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 363
Target Start/End: Original strand, 45274327 - 45274380
Alignment:
Q  310 acattatatttttattctatctaccattttctctcttcattatttttgaccaat 363  Q
    |||||||||| ||||||| ||| || ||||||||||| |||||||| |||||||    
T  45274327 acattatattgttattctctcttcctttttctctctttattattttggaccaat 45274380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 297
Target Start/End: Original strand, 48783809 - 48783838
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgt 297  Q
    ||||||||||||||||||||||||||||||    
T  48783809 agagaaatcatatttgtacaatcattttgt 48783838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Complemental strand, 51359862 - 51359825
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  51359862 agagaaatgatatttgtacaaccattttgtgacaactt 51359825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Complemental strand, 54036590 - 54036553
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  54036590 agagaaatgatatttgtacaaccattttgtgacaactt 54036553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 363
Target Start/End: Original strand, 54801060 - 54801113
Alignment:
Q  310 acattatatttttattctatctaccattttctctcttcattatttttgaccaat 363  Q
    |||||||||| ||| ||| ||| || |||||||||| |||||||||||||||||    
T  54801060 acattatattcttactctctcttcctttttctctctccattatttttgaccaat 54801113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 305
Target Start/End: Complemental strand, 3078979 - 3078943
Alignment:
Q  269 gagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    ||||||| ||||||||||||||||||||| |||||||    
T  3078979 gagaaatgatatttgtacaatcattttgtaacaactt 3078943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 4896572 - 4896528
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    |||||||| |||||||||||| || ||||||||||||| ||||||    
T  4896572 agagaaatgatatttgtacaaccactttgtgacaactttttgaca 4896528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 6290461 - 6290505
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    |||||||| ||||||||||||  ||||||| ||||||||||||||    
T  6290461 agagaaatgatatttgtacaactattttgtaacaacttcttgaca 6290505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 305
Target Start/End: Original strand, 9032780 - 9032816
Alignment:
Q  269 gagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  9032780 gagaaatgatatttgtacaatcaatttgtgacaactt 9032816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 305
Target Start/End: Complemental strand, 12387725 - 12387689
Alignment:
Q  269 gagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  12387725 gagaaatgatatttgtacaatcattttttgacaactt 12387689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 305
Target Start/End: Complemental strand, 32365727 - 32365691
Alignment:
Q  269 gagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  32365727 gagaaatgatatttgtacaaccattttgtgacaactt 32365691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 34116612 - 34116568
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    |||||||| |||||||||||| || ||||||||||||| ||||||    
T  34116612 agagaaatgatatttgtacaaccactttgtgacaactttttgaca 34116568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 304
Target Start/End: Original strand, 34259814 - 34259850
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaact 304  Q
    |||||||| |||||||||||| |||||||||||||||    
T  34259814 agagaaatgatatttgtacaaccattttgtgacaact 34259850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 47998593 - 47998637
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    |||||||| |||||||||||| |||||||| ||||||| ||||||    
T  47998593 agagaaatgatatttgtacaaccattttgtaacaactttttgaca 47998637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 51296261 - 51296217
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    |||||||| ||||||||||||||| ||| ||||||||| ||||||    
T  51296261 agagaaatgatatttgtacaatcactttatgacaactttttgaca 51296217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 269 - 312
Target Start/End: Complemental strand, 7596962 - 7596919
Alignment:
Q  269 gagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||    
T  7596962 gagaaatgatatttgtacaatcactttgtgacaacttcttgaca 7596919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 269 - 312
Target Start/End: Complemental strand, 21273781 - 21273738
Alignment:
Q  269 gagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    ||||||| |||||||||||| |||||||||||||||||||||||    
T  21273781 gagaaatgatatttgtacaaccattttgtgacaacttcttgaca 21273738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 268 - 305
Target Start/End: Original strand, 36064029 - 36064066
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    |||||||| |||||||||||||||||||||||||||||    
T  36064029 agagaaatgatatttgtacaatcattttgtgacaactt 36064066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 11223931 - 11223887
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    |||||||| |||||||||||  |||||||||||||||||||||||    
T  11223931 agagaaatgatatttgtacatccattttgtgacaacttcttgaca 11223887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 22852911 - 22852867
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    |||||||| |||||||||||| || ||||||||||||||||||||    
T  22852911 agagaaatgatatttgtacaaccactttgtgacaacttcttgaca 22852867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 305
Target Start/End: Original strand, 6806909 - 6806944
Alignment:
Q  270 agaaatcatatttgtacaatcattttgtgacaactt 305  Q
    |||||| |||||||||||||||||||||||||||||    
T  6806909 agaaatgatatttgtacaatcattttgtgacaactt 6806944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 308
Target Start/End: Original strand, 24319348 - 24319379
Alignment:
Q  277 atatttgtacaatcattttgtgacaacttctt 308  Q
    ||||||||||||||||||||||||||||||||    
T  24319348 atatttgtacaatcattttgtgacaacttctt 24319379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 305
Target Start/End: Complemental strand, 14710950 - 14710917
Alignment:
Q  272 aaatcatatttgtacaatcattttgtgacaactt 305  Q
    |||| |||||||||||||||||||||||||||||    
T  14710950 aaatgatatttgtacaatcattttgtgacaactt 14710917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Complemental strand, 17775501 - 17775464
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    |||||||| ||||||| |||||||||||||||||||||    
T  17775501 agagaaatgatatttgaacaatcattttgtgacaactt 17775464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Complemental strand, 40413410 - 40413373
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  40413410 agagaaatgatatttgtacaattattttgtgacaactt 40413373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Original strand, 42443103 - 42443140
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    |||||||| |||||||||||||||||| ||||||||||    
T  42443103 agagaaatgatatttgtacaatcatttagtgacaactt 42443140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 413
Target Start/End: Complemental strand, 43873672 - 43873592
Alignment:
Q  336 ttttctctcttcattatttttgaccaatnnnnnnngaggaaaaagaagttgtcaa---ttattgttcaaatatcactactc 413  Q
    |||||||||| |||||||||| || |||       ||||||||||||||||||||   | |||||||||||||||||||||    
T  43873672 ttttctctctccattatttttaactaatagaaagagaggaaaaagaagttgtcaaaaatgattgttcaaatatcactactc 43873592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 305
Target Start/End: Complemental strand, 13884231 - 13884195
Alignment:
Q  269 gagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  13884231 gagaaatgatatttgtacaatcattttttgacaactt 13884195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 26294188 - 26294232
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    |||||||| ||||| |||||| |||||||||||||||| ||||||    
T  26294188 agagaaatgatattggtacaaccattttgtgacaactttttgaca 26294232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 26307445 - 26307489
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    |||||||| ||||| |||||| |||||||||||||||| ||||||    
T  26307445 agagaaatgatattggtacaaccattttgtgacaactttttgaca 26307489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 305
Target Start/End: Complemental strand, 30112871 - 30112835
Alignment:
Q  269 gagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    ||||||| ||||||||||||||||||||||| |||||    
T  30112871 gagaaattatatttgtacaatcattttgtgataactt 30112835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 34970206 - 34970250
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    |||||||| |||||||||||||| |||||| ||||||| ||||||    
T  34970206 agagaaatgatatttgtacaatccttttgtaacaactttttgaca 34970250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 305
Target Start/End: Complemental strand, 38844861 - 38844825
Alignment:
Q  269 gagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  38844861 gagaaatgatatttgtacaaccattttgtgacaactt 38844825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 39021515 - 39021471
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    |||||||| |||||||||||| |||||||||| ||||| ||||||    
T  39021515 agagaaatgatatttgtacaaccattttgtgataactttttgaca 39021471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 270 - 310
Target Start/End: Complemental strand, 39719318 - 39719278
Alignment:
Q  270 agaaatcatatttgtacaatcattttgtgacaacttcttga 310  Q
    |||||| ||||||||||||||| ||||||||||||| ||||    
T  39719318 agaaatgatatttgtacaatcaatttgtgacaactttttga 39719278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 45101395 - 45101439
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    |||||||| |||||||||||| || ||||||||||||| ||||||    
T  45101395 agagaaatgatatttgtacaaccactttgtgacaactttttgaca 45101439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 268 - 305
Target Start/End: Complemental strand, 22353236 - 22353199
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    |||||||| |||||||||||||||||||||||||||||    
T  22353236 agagaaatgatatttgtacaatcattttgtgacaactt 22353199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 363
Target Start/End: Original strand, 17999808 - 17999861
Alignment:
Q  310 acattatatttttattctatctaccattttctctcttcattatttttgaccaat 363  Q
    ||||||| |||||||||| ||| || |||||||||| |||| ||||||||||||    
T  17999808 acattatctttttattctctcttcctttttctctctgcattgtttttgaccaat 17999861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Complemental strand, 27307303 - 27307266
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  27307303 agagaaatgatatttgtacaatcaatttgtgacaactt 27307266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Original strand, 29795446 - 29795483
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  29795446 agagaaatgatatttgtacaaccattttgtgacaactt 29795483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Complemental strand, 36909915 - 36909878
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  36909915 agagaaatgatatttgtacaaccattttgtgacaactt 36909878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 305
Target Start/End: Complemental strand, 3196158 - 3196122
Alignment:
Q  269 gagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  3196158 gagaaatgatatttgtacaatcaatttgtgacaactt 3196122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 4738644 - 4738600
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    |||||||| |||||||||||| || ||||||||||||| ||||||    
T  4738644 agagaaatgatatttgtacaaccactttgtgacaactttttgaca 4738600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 11229393 - 11229349
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    |||||||| |||||||||||  || ||||||||||||||||||||    
T  11229393 agagaaatgatatttgtacatccactttgtgacaacttcttgaca 11229349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 18373846 - 18373890
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    |||||||| ||||||||||||||||||| ||||||| | ||||||    
T  18373846 agagaaatgatatttgtacaatcattttatgacaacattttgaca 18373890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 305
Target Start/End: Complemental strand, 21805857 - 21805821
Alignment:
Q  269 gagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    ||||||| |||||||||||||||||| ||||||||||    
T  21805857 gagaaatgatatttgtacaatcatttagtgacaactt 21805821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 31296917 - 31296873
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    |||||||| |||||||||||| |||||||||||||| | ||||||    
T  31296917 agagaaatgatatttgtacaaccattttgtgacaacgttttgaca 31296873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 33296143 - 33296099
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    |||||||| |||||||||||| || ||||||||||||| ||||||    
T  33296143 agagaaatgatatttgtacaaccactttgtgacaactttttgaca 33296099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 268 - 305
Target Start/End: Original strand, 50797790 - 50797827
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    |||||||| |||||||||||||||||||||||||||||    
T  50797790 agagaaatgatatttgtacaatcattttgtgacaactt 50797827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 305
Target Start/End: Complemental strand, 16836175 - 16836139
Alignment:
Q  269 gagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    ||||||| |||||||||||||||||||||||||||||    
T  16836175 gagaaatgatatttgtacaatcattttgtgacaactt 16836139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 307
Target Start/End: Original strand, 40612113 - 40612152
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaacttct 307  Q
    |||||||| |||||||||||| ||||||||||||||||||    
T  40612113 agagaaatgatatttgtacaaccattttgtgacaacttct 40612152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 305
Target Start/End: Original strand, 52714979 - 52715014
Alignment:
Q  270 agaaatcatatttgtacaatcattttgtgacaactt 305  Q
    |||||| |||||||||||||||||||||||||||||    
T  52714979 agaaatgatatttgtacaatcattttgtgacaactt 52715014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 268 - 302
Target Start/End: Complemental strand, 44518022 - 44517988
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaa 302  Q
    |||||||||||||||||| ||||||||||||||||    
T  44518022 agagaaatcatatttgtataatcattttgtgacaa 44517988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Original strand, 1690445 - 1690482
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  1690445 agagaaataatatttgtacaaccattttgtgacaactt 1690482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Original strand, 9011644 - 9011681
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  9011644 agagaaatgatatttgtacaaccattttgtgacaactt 9011681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Original strand, 19442505 - 19442542
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    |||||||| ||||||| |||||||||||||||||||||    
T  19442505 agagaaatgatatttgaacaatcattttgtgacaactt 19442542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Complemental strand, 27687580 - 27687543
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  27687580 agagaaatgatatttgtacaaccattttgtgacaactt 27687543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Complemental strand, 40596115 - 40596078
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  40596115 agagaaatgatatttgtacaaccattttgtgacaactt 40596078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Original strand, 42256459 - 42256496
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  42256459 agagaaatgatatttgtacaaccattttgtgacaactt 42256496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 8934668 - 8934624
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    |||||||| ||||||||||||  ||||||||||||||| ||||||    
T  8934668 agagaaattatatttgtacaactattttgtgacaactttttgaca 8934624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 11812386 - 11812430
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    |||||||| ||| |||||||||||||||||||||| || ||||||    
T  11812386 agagaaatgatagttgtacaatcattttgtgacaattttttgaca 11812430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 31428029 - 31427985
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    |||||||| |||||||||||| || |||||||||| |||||||||    
T  31428029 agagaaatgatatttgtacaaccactttgtgacaatttcttgaca 31427985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 39669805 - 39669849
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    |||||||| |||||||||||| ||||||||||||| || ||||||    
T  39669805 agagaaatgatatttgtacaaccattttgtgacaattttttgaca 39669849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 305
Target Start/End: Original strand, 40238438 - 40238474
Alignment:
Q  269 gagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  40238438 gagaaatgatatttgtacaatcattttttgacaactt 40238474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 305
Target Start/End: Complemental strand, 41507254 - 41507218
Alignment:
Q  269 gagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  41507254 gagaaatgatatttgtacaaccattttgtgacaactt 41507218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 44672102 - 44672058
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    |||||||| ||||||||||||||||||| | ||||||| ||||||    
T  44672102 agagaaatgatatttgtacaatcattttttaacaactttttgaca 44672058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 50226951 - 50226907
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    |||||||| |||||||||||| || ||||||||||||| ||||||    
T  50226951 agagaaatgatatttgtacaaccactttgtgacaactttttgaca 50226907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 305
Target Start/End: Complemental strand, 50528128 - 50528092
Alignment:
Q  269 gagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  50528128 gagaaatgatatttgtacaatcaatttgtgacaactt 50528092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 52669840 - 52669796
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    |||||| | |||||||||||| |||||||||||||||||| ||||    
T  52669840 agagaagtgatatttgtacaaccattttgtgacaacttctggaca 52669796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0592 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0592
Description:

Target: scaffold0592; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 308
Target Start/End: Complemental strand, 8379 - 8339
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaacttctt 308  Q
    |||||||| |||||||||||| |||||||||||||||||||    
T  8379 agagaaattatatttgtacaaccattttgtgacaacttctt 8339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 26660483 - 26660439
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    |||||||| |||||||||||  |||||||||||||||||||||||    
T  26660483 agagaaatgatatttgtacatccattttgtgacaacttcttgaca 26660439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 26932075 - 26932031
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    |||||||| |||||||||||  |||||||||||||||||||||||    
T  26932075 agagaaatgatatttgtacatccattttgtgacaacttcttgaca 26932031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 305
Target Start/End: Original strand, 27440479 - 27440515
Alignment:
Q  269 gagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    ||||||| |||||||||||||||||||||||||||||    
T  27440479 gagaaatgatatttgtacaatcattttgtgacaactt 27440515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 36713250 - 36713206
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    |||||||| |||||||||||| || ||||||||||||||||||||    
T  36713250 agagaaatgatatttgtacaaccactttgtgacaacttcttgaca 36713206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 312
Target Start/End: Original strand, 19127124 - 19127167
Alignment:
Q  269 gagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    ||||||| |||||||||||| || ||||||||||||||||||||    
T  19127124 gagaaatgatatttgtacaaccactttgtgacaacttcttgaca 19127167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 3771083 - 3771034
Alignment:
Q  263 agttcagagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    |||| |||||||| |||| ||||||| |||||||||||||||| ||||||    
T  3771083 agtttagagaaatgatatctgtacaaccattttgtgacaactttttgaca 3771034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Complemental strand, 3960241 - 3960204
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  3960241 agagaaatcatatttgtataatcattttttgacaactt 3960204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Original strand, 14914371 - 14914408
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  14914371 agagaaatgatatttgtacaaccattttgtgacaactt 14914408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 310
Target Start/End: Original strand, 42699057 - 42699098
Alignment:
Q  269 gagaaatcatatttgtacaatcattttgtgacaacttcttga 310  Q
    ||||||| |||||||||||| |||||||||||||||| ||||    
T  42699057 gagaaatgatatttgtacaaccattttgtgacaactttttga 42699098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 305
Target Start/End: Complemental strand, 3109658 - 3109622
Alignment:
Q  269 gagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  3109658 gagaaatgatatttgtacaatcaatttgtgacaactt 3109622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 310 - 363
Target Start/End: Complemental strand, 10469956 - 10469901
Alignment:
Q  310 acattatatttttattct--atctaccattttctctcttcattatttttgaccaat 363  Q
    ||||||| ||||||||||  ||||||| |||||||||| |||| ||||||||||||    
T  10469956 acattatgtttttattctttatctacctttttctctctccattgtttttgaccaat 10469901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 11768062 - 11768018
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    |||||||| |||||||||||  || ||||||||||||||||||||    
T  11768062 agagaaatgatatttgtacatccactttgtgacaacttcttgaca 11768018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 14324040 - 14323996
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    |||||||| ||||||| |||  |||||||||||||||||||||||    
T  14324040 agagaaatgatatttgcacatccattttgtgacaacttcttgaca 14323996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 305
Target Start/End: Original strand, 16143390 - 16143426
Alignment:
Q  269 gagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  16143390 gagaaatgatatttgtacaaccattttgtgacaactt 16143426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 305
Target Start/End: Original strand, 17063865 - 17063901
Alignment:
Q  269 gagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  17063865 gagaaatgatatttgtacaatcattttttgacaactt 17063901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 23991206 - 23991162
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    |||||||| |||||||||||| || |||||||||||||| |||||    
T  23991206 agagaaatgatatttgtacaaccactttgtgacaacttcctgaca 23991162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 38500942 - 38500986
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    |||||||| |||||||||||| ||||||||||||| || ||||||    
T  38500942 agagaaatgatatttgtacaaccattttgtgacaattttttgaca 38500986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 48945846 - 48945890
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    |||||||| |||||||||||| || ||||||||||||||||||||    
T  48945846 agagaaatgatatttgtacaaccactttgtgacaacttcttgaca 48945890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 55344368 - 55344324
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    |||||||| |||||||||||| |||||||||| ||||||||||||    
T  55344368 agagaaatgatatttgtacaaccattttgtgataacttcttgaca 55344324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 307
Target Start/End: Complemental strand, 3958090 - 3958051
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaacttct 307  Q
    |||||||| ||||||||||||||| |||||||||||||||    
T  3958090 agagaaatgatatttgtacaatcaatttgtgacaacttct 3958051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 312
Target Start/End: Complemental strand, 20380960 - 20380917
Alignment:
Q  269 gagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    ||||||| |||||||||||| || ||||||||||||||||||||    
T  20380960 gagaaatgatatttgtacaaccactttgtgacaacttcttgaca 20380917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 270 - 312
Target Start/End: Complemental strand, 31206921 - 31206879
Alignment:
Q  270 agaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    |||||| |||||||||||||||||||||||||| || ||||||    
T  31206921 agaaatgatatttgtacaatcattttgtgacaaatttttgaca 31206879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Complemental strand, 7286 - 7249
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    |||||||| ||||||||||||||||||| |||||||||    
T  7286 agagaaatgatatttgtacaatcattttctgacaactt 7249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Original strand, 1765403 - 1765440
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    |||||||| ||||||||||| |||||||||||||||||    
T  1765403 agagaaatgatatttgtacattcattttgtgacaactt 1765440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Original strand, 8254026 - 8254063
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  8254026 agagaaatgatatttgtacaaccattttgtgacaactt 8254063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Complemental strand, 34021535 - 34021498
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  34021535 agagaaatgatatttgtacaatcaatttgtgacaactt 34021498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Complemental strand, 35074162 - 35074125
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    |||||||| |||||||||||||||||||| ||||||||    
T  35074162 agagaaatgatatttgtacaatcattttgggacaactt 35074125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Complemental strand, 43169814 - 43169777
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  43169814 agagaaatgatatttgtacaaccattttgtgacaactt 43169777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Original strand, 47683800 - 47683837
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  47683800 agagaaatgatatttgtacaaccattttgtgacaactt 47683837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Original strand, 48405409 - 48405446
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  48405409 agagaaatgatatttgtacaaccattttgtgacaactt 48405446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Original strand, 49196695 - 49196732
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  49196695 agagaaatgatatttgtacaaccattttgtgacaactt 49196732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Complemental strand, 52454166 - 52454129
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  52454166 agagaaatgatatttgtacaatcaatttgtgacaactt 52454129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 305
Target Start/End: Complemental strand, 462472 - 462436
Alignment:
Q  269 gagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  462472 gagaaatgatatttgtacaaccattttgtgacaactt 462436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 305
Target Start/End: Original strand, 11327108 - 11327144
Alignment:
Q  269 gagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  11327108 gagaaatgatatttgtacaaccattttgtgacaactt 11327144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 18169156 - 18169200
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    |||||||| |||||||||||| || ||||||||||||| ||||||    
T  18169156 agagaaatgatatttgtacaaccactttgtgacaactttttgaca 18169200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 305
Target Start/End: Complemental strand, 23163228 - 23163192
Alignment:
Q  269 gagaaatcatatttgtacaatcattttgtgacaactt 305  Q
    |||||||||||||||||||| || |||||||||||||    
T  23163228 gagaaatcatatttgtacaaccaatttgtgacaactt 23163192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 30796686 - 30796642
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    |||||||| ||||||| |||| || ||||||||||||||||||||    
T  30796686 agagaaatgatatttgcacaaccactttgtgacaacttcttgaca 30796642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 310 - 362
Target Start/End: Complemental strand, 34733300 - 34733248
Alignment:
Q  310 acattatatttttattctatctaccattttctctcttcattatttttgaccaa 362  Q
    |||||||||||||||||| ||| |  |||||||||| |||| |||||||||||    
T  34733300 acattatatttttattctctcttcatttttctctctccattgtttttgaccaa 34733248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 43333742 - 43333698
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    |||||||| ||||||||||| ||||||| ||||||||| ||||||    
T  43333742 agagaaatgatatttgtacagtcattttatgacaactttttgaca 43333698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 219736 - 219692
Alignment:
Q  268 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 312  Q
    |||||||| |||||||||||| || ||||||||||||| ||||||    
T  219736 agagaaatgatatttgtacaaccactttgtgacaactttttgaca 219692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University