View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10590_low_2 (Length: 235)
Name: NF10590_low_2
Description: NF10590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10590_low_2 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 41257130 - 41256889
Alignment:
| Q |
1 |
taaatcaaatcaaatcaaattcaattaaggattgtgttgtgtcacaagtcacaac-------aactagtagcatgctacaaacacaattacaggatacag |
93 |
Q |
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| T |
41257130 |
taaatcaaatcaaatcaaattcaattaaggattgtgttgtgtcacaagtcacaactcacaacaactagtagcatgctacaaacacaattgcaggatacag |
41257031 |
T |
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| Q |
94 |
ctcataatcttaatagctcaaaaaatgaaaccttaaatcaaaccaaatcaaattcgataaaggattgtgttctatcacaacaacttctaacatgctacaa |
193 |
Q |
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| T |
41257030 |
ctcataatcttaatagctcaaaaaatgaaaccttaaatcaaaccaaatcaaattcgataaaggattgtgttctgtcacaacaacttctaacatgctacaa |
41256931 |
T |
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| Q |
194 |
acacaacagctcgtaatcttaacacctcaaaaaatgaaaccc |
235 |
Q |
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| T |
41256930 |
acacaacagctcgtagtcttaacacctcaaaaaatgaaaccc |
41256889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 65 - 173
Target Start/End: Complemental strand, 41257193 - 41257084
Alignment:
| Q |
65 |
catgctacaaacacaattacaggatacag-ctcataatcttaatagctcaaaaaatgaaaccttaaatcaaaccaaatcaaattcgataaaggattgtgt |
163 |
Q |
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| T |
41257193 |
catgctacaaatacaattgcacaataccggctcctaattttaacagctcaaaaaatgaaaccttaaatcaaatcaaatcaaattcaattaaggattgtgt |
41257094 |
T |
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| Q |
164 |
tctatcacaa |
173 |
Q |
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| T |
41257093 |
tgtgtcacaa |
41257084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 141
Target Start/End: Complemental strand, 41256887 - 41256766
Alignment:
| Q |
12 |
aaatcaaattcaattaaggattgtgttgtgtcacaagtcacaacaactagtagcatgctacaaacacaattacaggata-cagctcataatcttaatagc |
110 |
Q |
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|||||||||||||||| ||||||||||||||||||| |||||| || ||||||||||||||| | || |||| |||||| |||||| || ||| |
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| T |
41256887 |
aaatcaaattcaatta-ggattgtgttgtgtcacaa-------caactactaacatgctacaaacacagctgcatgataccagctcctaatctgaaaagc |
41256796 |
T |
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| Q |
111 |
tcaaaaaatgaaaccttaaatcaaaccaaat |
141 |
Q |
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| T |
41256795 |
t-aaaaaatgaaaccttatatcaaatcaaat |
41256766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 198
Target Start/End: Complemental strand, 41256872 - 41256828
Alignment:
| Q |
154 |
aggattgtgttctatcacaacaacttctaacatgctacaaacaca |
198 |
Q |
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| T |
41256872 |
aggattgtgttgtgtcacaacaactactaacatgctacaaacaca |
41256828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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