View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10591_high_10 (Length: 264)
Name: NF10591_high_10
Description: NF10591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10591_high_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 11080599 - 11080368
Alignment:
| Q |
18 |
aacaccattgcttgtctaagtgatttagtgatttcatttctagtgaatattccatcttcatttcttttaacttcagtagccaaacccttttccaccaaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
11080599 |
aacaccattgcttgtctaagtgatttagtgatttcatttctagtgaatgttccatcttcatttcttttaacttcaatagtcaaacccttttccaccaaaa |
11080500 |
T |
|
| Q |
118 |
gctttgcattaagaggcagatcaacaatgaatggtaacataacaaggtttttccaaattgcaatgtttcaattgttgaaccccatccagaatgaaacaat |
217 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
11080499 |
gctttgcattgagaggctgatcaacaatgaatggtaacacaacaaggtttttccaaattgcaatgtttcaattgttgaaccccatctagaatgaaacaat |
11080400 |
T |
|
| Q |
218 |
gatccaccaatatatgaatgtgctaatatctc |
249 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |
|
|
| T |
11080399 |
gatccaccaatatgtgaatgtgctaatatctc |
11080368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 1653677 - 1653445
Alignment:
| Q |
18 |
aacaccattgcttgtctaagtgatttagtgatttcatttctagtgaatattccatcttcatttcttttaacttcagtagccaaacccttttccaccaaaa |
117 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||| || |
|
|
| T |
1653677 |
aacaccatagcttgtctaagtgatttagcaatttcatatctagtgaatgttccatcttcatttcttttaacttcaatagccaaacccttatccaccagaa |
1653578 |
T |
|
| Q |
118 |
gctttgcattaagaggcagatcaacaatgaatggtaacataacaaggtt-tttccaaattgcaatgtttcaattgttgaaccccatccagaatgaaacaa |
216 |
Q |
| |
|
|| |||||||||||||| |||| ||| |||| ||||||| |||||| || ||| |||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
1653577 |
gccttgcattaagaggctgatcgacattgaaaggtaacacaacaagtttgttttcaaattgcaatgcttcaattgttgaaccccacccagaatgaaacaa |
1653478 |
T |
|
| Q |
217 |
tgatccaccaatatatgaatgtgctaatatctc |
249 |
Q |
| |
|
|| || |||||| ||||||||||||||||||| |
|
|
| T |
1653477 |
agaccccccaatagatgaatgtgctaatatctc |
1653445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 1742053 - 1741821
Alignment:
| Q |
18 |
aacaccattgcttgtctaagtgatttagtgatttcatttctagtgaatattccatcttcatttcttttaacttcagtagccaaacccttttccaccaaaa |
117 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||| || |
|
|
| T |
1742053 |
aacaccatagcttgtctaagtgatttagcaatttcatatctagtgaatgttccatcttcatttcttttaacttcaatagccaaacccttatccaccagaa |
1741954 |
T |
|
| Q |
118 |
gctttgcattaagaggcagatcaacaatgaatggtaacataacaaggtt-tttccaaattgcaatgtttcaattgttgaaccccatccagaatgaaacaa |
216 |
Q |
| |
|
|| |||||||||||||| |||| ||| |||| ||||||| |||||| || ||| |||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
1741953 |
gccttgcattaagaggctgatcgacattgaaaggtaacacaacaagtttgttttcaaattgcaatgcttcaattgttgaaccccacccagaatgaaacaa |
1741854 |
T |
|
| Q |
217 |
tgatccaccaatatatgaatgtgctaatatctc |
249 |
Q |
| |
|
|| || |||||| ||||||||||||||||||| |
|
|
| T |
1741853 |
agaccccccaatagatgaatgtgctaatatctc |
1741821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 28001004 - 28001236
Alignment:
| Q |
18 |
aacaccattgcttgtctaagtgatttagtgatttcatttctagtgaatattccatcttcatttcttttaacttcagtagccaaacccttttccaccaaaa |
117 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||| |||||| ||| |||||||||||||||||||||||||| ||||||||||||| ||||||| || |
|
|
| T |
28001004 |
aacaccatagcttgtctaagtgatttagcaatttcatatctagtaaatgttccatcttcatttcttttaacttcaatagccaaacccttatccaccagaa |
28001103 |
T |
|
| Q |
118 |
gctttgcattaagaggcagatcaacaatgaatggtaacataacaaggtt-tttccaaattgcaatgtttcaattgttgaaccccatccagaatgaaacaa |
216 |
Q |
| |
|
|| |||||||||||||| |||| ||| |||||||||||| |||||| || |||||||||||||||| |||||||||||||||| | |||||||||||||| |
|
|
| T |
28001104 |
gccttgcattaagaggctgatcgacattgaatggtaacacaacaagtttgtttccaaattgcaatgcttcaattgttgaacccaacccagaatgaaacaa |
28001203 |
T |
|
| Q |
217 |
tgatccaccaatatatgaatgtgctaatatctc |
249 |
Q |
| |
|
|| || |||||| ||||||||||||||||||| |
|
|
| T |
28001204 |
agaccccccaatagatgaatgtgctaatatctc |
28001236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University