View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10591_high_13 (Length: 243)
Name: NF10591_high_13
Description: NF10591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10591_high_13 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 20 - 243
Target Start/End: Complemental strand, 9300725 - 9300501
Alignment:
| Q |
20 |
ttgcacgtacacttcctcattcaagttgccatttaagaaggcattatttacatcaagttgatgaatagtctagttgtaggaaatagcaagagagaggaca |
119 |
Q |
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| T |
9300725 |
ttgcacgtacacttcctcattcaagttgccatttaagaaggcattatttacatcaagttgatgaatagtctagttgtaggaaatagcaagagagaggaaa |
9300626 |
T |
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| Q |
120 |
agtctgatgatgacaagttcgatgacatggtagaatgtctca-taaaatcaaaatcttgcagttggtgaaaccctttagccactaaacgtgcattgagcc |
218 |
Q |
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| T |
9300625 |
agtctgatggtgacaagtttgatgacatggtagaatgtctcattaaaatcaaaatcttgcagttggtgaaaccctttagccactaaacgtgcattgagcc |
9300526 |
T |
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| Q |
219 |
tattgacgccatcaacattttcttt |
243 |
Q |
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| T |
9300525 |
tattgactccatcaacattttcttt |
9300501 |
T |
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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 111
Target Start/End: Original strand, 32457892 - 32457955
Alignment:
| Q |
48 |
ccatttaagaaggcattatttacatcaagttgatgaatagtctagttgtaggaaatagcaagag |
111 |
Q |
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| T |
32457892 |
ccatttaagaaggcattattgacatccagctgttgaataggccacttgtaggaaatagcaagag |
32457955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 91
Target Start/End: Complemental strand, 3218874 - 3218829
Alignment:
| Q |
46 |
tgccatttaagaaggcattatttacatcaagttgatgaatagtcta |
91 |
Q |
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| T |
3218874 |
tgccatttaagaaagcattattaacatctagttgctgaatagtcta |
3218829 |
T |
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