View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10591_high_16 (Length: 240)
Name: NF10591_high_16
Description: NF10591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10591_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 37614722 - 37614484
Alignment:
| Q |
1 |
aaaagtccaggaatggccctgaaagtgattttaccagttggtggatcatccaactggatttcatgcagtggaagccaaaccaagagttccttcaccttca |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37614722 |
aaaagtccagtaatggccctgaaagtgattttaccagttggtggatcatccaactggatttcatgcagtggaagccaaaccaagagttccttcaccttca |
37614623 |
T |
|
| Q |
101 |
caccagttagcttcttgatcttaccaacctcaacagtggcagtgacttcagtaccataggtcacaagcctatcaactttctcaaacttgtgagtatagct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37614622 |
caccagttagcttcttgatcttaccaacctcaacagtggcagtgacttcagtaccataggtcacaagcctatcaactttctcaaacttgtgagtatagct |
37614523 |
T |
|
| Q |
201 |
tgctttctgcttaagccaaacaaaaccactctccctatg |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
37614522 |
tgctttctgcttaagccaaacaaaaccactctccctatg |
37614484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 50
Target Start/End: Original strand, 41716554 - 41716584
Alignment:
| Q |
20 |
tgaaagtgattttaccagttggtggatcatc |
50 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
41716554 |
tgaaagtgattttaccagttggtggatcatc |
41716584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 50
Target Start/End: Original strand, 45981969 - 45981999
Alignment:
| Q |
20 |
tgaaagtgattttaccagttggtggatcatc |
50 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
45981969 |
tgaaagtgattttaccagttggtggatcatc |
45981999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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