View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10591_high_5 (Length: 360)
Name: NF10591_high_5
Description: NF10591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10591_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 1519199 - 1519542
Alignment:
| Q |
1 |
gacatacttcaaaactgcatgcagtaagactaaatcattctcctccttccctctatttgtacttctcaagcctgcatattgtgacatgatgtcgtctgaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1519199 |
gacatacttcaaaactgcatgcagtaagactaaatcattctcctccttccctctatttgtacttctcaagcctgcatattgtgacatgatgtcgtctgaa |
1519298 |
T |
|
| Q |
101 |
aaaagtggagtgccaggattctctgatgcaaatttcacctgtcattccatatttgaagacgaggagaacatattcatcaactaaaggaaatattaatagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1519299 |
aaaagtggagtgccaggattctctgatgcaaatttcacctgtcattccatatttgaagacgaggagaacatattcatcaactaaaggaaatattaatagt |
1519398 |
T |
|
| Q |
201 |
aaaaaataatgtaaacaggatagttatgggttactagtgtgatgtaaatatggtagctttataatttaatagttatgggtgtcatgtaaaaaataatgta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1519399 |
aaaaaataatgtaaacaggatagttatgggttactagtgtgatgtaaatatggtagctttataatttaatagttatgggtgtcatgtaaaaaataatgta |
1519498 |
T |
|
| Q |
301 |
aatagaacagacgctaatgaaatataacttatgcctgaaagttt |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1519499 |
aatagaacagacgctaatgaaatataacttatgcctgaaagttt |
1519542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 2911042 - 2911289
Alignment:
| Q |
1 |
gacatacttcaaaactgcatgcagtaagactaaatcattctcctccttccctctatttgtacttctcaagcctgcatattgtgacatgatgtcgtctgaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||||||||| | | |||||||||||||||||||||||| |||||| |||||| |||||| |
|
|
| T |
2911042 |
gacatacttcaaaactgcatgcagcaagactaaatcatgctcctccttccatatctttgtacttctcaagcctgcatatcgtgacaagatgtcatctgaa |
2911141 |
T |
|
| Q |
101 |
aaaagtggagtgccaggattctctgatgcaaatttcacctgtcattccatatttgaagacgaggagaacatattcatcaactaaaggaaatattaatagt |
200 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
2911142 |
aaaagtggagtgccgggattttctgatgcaaacttcacctgtcattccatatttgaagatgaggaaaacatattcatcaactaaaggaaataataatagt |
2911241 |
T |
|
| Q |
201 |
aaaaaataatgtaaacaggatagttatgggttactagtgtgatgtaaa |
248 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
2911242 |
aaaaaataatgtaaataggatagttatgggttactagtgtcatgtaaa |
2911289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 279 - 340
Target Start/End: Original strand, 2911278 - 2911339
Alignment:
| Q |
279 |
gtgtcatgtaaaaaataatgtaaatagaacagacgctaatgaaatataacttatgcctgaaa |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2911278 |
gtgtcatgtaaaaaataatgtaaatagaacagatgctaatgaaatataacttatgcctgaaa |
2911339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University