View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10591_high_6 (Length: 345)
Name: NF10591_high_6
Description: NF10591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10591_high_6 |
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| [»] chr1 (2 HSPs) |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 206 - 345
Target Start/End: Original strand, 26864673 - 26864812
Alignment:
| Q |
206 |
tttcggaaaattagaaacagtgaaagagaaaaagaaacgtcacaaaccgagttaaaaagtcaccgcaatcgccttcgccgcgcttcgaggtgacccaccg |
305 |
Q |
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| T |
26864673 |
tttcgaaaaattagaaacaatgaaagagaacaagaaacgtcacaaacccagttatcaagtcatcgccatcgacctcgtcgcgctacgatgtgtaccacag |
26864772 |
T |
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| Q |
306 |
taatcaccgcgggcggcccgttcaccaaccaccaaatctg |
345 |
Q |
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| T |
26864773 |
tcatcaccgccggcgtcccgttcaccaaccaccaaatctg |
26864812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 241 - 345
Target Start/End: Original strand, 20723243 - 20723347
Alignment:
| Q |
241 |
aacgtcacaaaccgagttaaaaagtcaccgcaatcgccttcgccgcgcttcgaggtgacccaccgtaatcaccgcgggcggcccgttcaccaaccaccaa |
340 |
Q |
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| T |
20723243 |
aacgtcacaaacccagttatcaagtcatcgccatcgacctcgtcgcgctacgatgtgcaccaccgtcatcaccgccggcgtcccgttcaccaaccaccaa |
20723342 |
T |
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| Q |
341 |
atctg |
345 |
Q |
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||||| |
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| T |
20723343 |
atctg |
20723347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 206 - 345
Target Start/End: Original strand, 20897052 - 20897191
Alignment:
| Q |
206 |
tttcggaaaattagaaacagtgaaagagaaaaagaaacgtcacaaaccgagttaaaaagtcaccgcaatcgccttcgccgcgcttcgaggtgacccaccg |
305 |
Q |
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| T |
20897052 |
tttcgaaaaattagagacaatgaaagagaacaagaaacgtcacaaacccatttatcaagtcatcgccatcgacctcgtcgtgctacgatgtgcaccaccg |
20897151 |
T |
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| Q |
306 |
taatcaccgcgggcggcccgttcaccaaccaccaaatctg |
345 |
Q |
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| T |
20897152 |
ttatcactgtcgtcgtcccgttcaccaaccaccaaatctg |
20897191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 273
Target Start/End: Complemental strand, 12049041 - 12048974
Alignment:
| Q |
206 |
tttcggaaaattagaaacagtgaaagagaaaaagaaacgtcacaaaccgagttaaaaagtcaccgcaa |
273 |
Q |
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|||| |||||||| |||||||| ||||||| ||||||||||||||||| || || |||||||||||| |
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| T |
12049041 |
tttcagaaaattataaacagtggaagagaacaagaaacgtcacaaacccagctatcaagtcaccgcaa |
12048974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 345
Target Start/End: Complemental strand, 1973064 - 1973019
Alignment:
| Q |
300 |
ccaccgtaatcaccgcgggcggcccgttcaccaaccaccaaatctg |
345 |
Q |
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| T |
1973064 |
ccaccgtcatcaccgccggcgtccggttcaccaaccaccaaatctg |
1973019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 273
Target Start/End: Original strand, 46106066 - 46106133
Alignment:
| Q |
206 |
tttcggaaaattagaaacagtgaaagagaaaaagaaacgtcacaaaccgagttaaaaagtcaccgcaa |
273 |
Q |
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|||||||||||||||||||||| ||||||| ||||||| ||||||||| || || |||||||||||| |
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| T |
46106066 |
tttcggaaaattagaaacagtggaagagaacaagaaacatcacaaacccagctatcaagtcaccgcaa |
46106133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 46105921 - 46105957
Alignment:
| Q |
137 |
ttcaaacaaacacaacaacacatccccatctacaaat |
173 |
Q |
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| T |
46105921 |
ttcaaacaaacacaacaacacatccccatctacaaat |
46105957 |
T |
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