View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10591_high_9 (Length: 270)
Name: NF10591_high_9
Description: NF10591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10591_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 261
Target Start/End: Complemental strand, 2578715 - 2578473
Alignment:
| Q |
19 |
caagagacatgggttttcgcaatacagcaggtccacaaaagcaccaagcagtagcactaatgacaagtgctgatcaagcagtttattataagtgtcacat |
118 |
Q |
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| T |
2578715 |
caagagacatgggttttcgcaatacagcaggtccacaaaagcaccaagcagtagcactaatgacaagtgctgatcaagcggtttattataagtgtcacat |
2578616 |
T |
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| Q |
119 |
tgatgcatatcaagacactctttatgctcattccaatcgccaattttatagagaatgcaacatttatggaacagttgatttcatttttggaaattcagct |
218 |
Q |
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| T |
2578615 |
tgatgcatatcaagacactctttatgctcattccaatcgccaattttatagagaatgcaacatttatggaacagttgatttcatttttggaaattcagct |
2578516 |
T |
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| Q |
219 |
gttgtgattcagaactgcaacattatgcctaagttacctatgc |
261 |
Q |
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| T |
2578515 |
gttgtgattcaaaactgcaacattatgcctaagttacctatgc |
2578473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 42 - 242
Target Start/End: Original strand, 16605597 - 16605797
Alignment:
| Q |
42 |
acagcaggtccacaaaagcaccaagcagtagcactaatgacaagtgctgatcaagcagtttattataagtgtcacattgatgcatatcaagacactcttt |
141 |
Q |
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| T |
16605597 |
acagccggtccacaaaaacaccaagcagtagcactaatgacaagtgcagatcaagcagttttctacaaatgttccatggatgcatatcaagacacactct |
16605696 |
T |
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| Q |
142 |
atgctcattccaatcgccaattttatagagaatgcaacatttatggaacagttgatttcatttttggaaattcagctgttgtgattcagaactgcaacat |
241 |
Q |
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| T |
16605697 |
acgcacactcaaatcgccaattctaccgcgaatgcaacatatacggaacagtcgatttcattttcggaaactcagccgtcgtattacaaaactgcaacat |
16605796 |
T |
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| Q |
242 |
t |
242 |
Q |
| |
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| |
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| T |
16605797 |
t |
16605797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 224
Target Start/End: Complemental strand, 8380783 - 8380745
Alignment:
| Q |
186 |
ggaacagttgatttcatttttggaaattcagctgttgtg |
224 |
Q |
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| T |
8380783 |
ggaacagttgatttcatctttggtaattcagctgttgtg |
8380745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 8767036 - 8767085
Alignment:
| Q |
159 |
caattttatagagaatgcaacatttatggaacagttgatttcatttttgg |
208 |
Q |
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| T |
8767036 |
caattttacagagaatgtaacatctatggcacagttgatttcatctttgg |
8767085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 44474514 - 44474450
Alignment:
| Q |
159 |
caattttatagagaatgcaacatttatggaacagttgatttcatttttggaaattcagctgttgt |
223 |
Q |
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||||||||| | ||||| |||| |||||||||||||| ||||| ||||||||| | |||||||| |
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| T |
44474514 |
caattttatcgcgaatgtgacatctatggaacagttgacttcatatttggaaatgctgctgttgt |
44474450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 44488688 - 44488636
Alignment:
| Q |
159 |
caattttatagagaatgcaacatttatggaacagttgatttcatttttggaaa |
211 |
Q |
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|||||||||| ||||||| |||||||||||||| | ||||| || |||||||| |
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| T |
44488688 |
caattttataaagaatgcgacatttatggaacaatagattttatatttggaaa |
44488636 |
T |
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