View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10591_low_13 (Length: 274)
Name: NF10591_low_13
Description: NF10591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10591_low_13 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 90 - 274
Target Start/End: Complemental strand, 22432070 - 22431887
Alignment:
| Q |
90 |
gacgaagaagtaattagtcgataatccctttgtttatgtagaagtttcataattaaaatatttttcaattttaaattatttctcactttaaaagaccaat |
189 |
Q |
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| T |
22432070 |
gacgaagaagtaattagtcgataatccctttgtttctgtagaagtttcatatttaaaatatttttcaattttaaattatttctcactttaaaagatcaat |
22431971 |
T |
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| Q |
190 |
acaacatttattaacttatttaataatatnnnnnnnnttagaaacttccagccacctttctatctcaatcaaccaaatactcatc |
274 |
Q |
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| T |
22431970 |
acaacatttattaacttatttaataatat-aaaaaaattagaaacatccagccgcctttctatctcaatcaaccaaatattcatc |
22431887 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 211
Target Start/End: Original strand, 39972791 - 39972842
Alignment:
| Q |
160 |
ttaaattatttctcactttaaaagaccaatacaacatttattaacttattta |
211 |
Q |
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| T |
39972791 |
ttaaattatttgtcactttaaaataccaagacaacatttattaactttttta |
39972842 |
T |
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