View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10591_low_18 (Length: 250)
Name: NF10591_low_18
Description: NF10591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10591_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 1519107 - 1518914
Alignment:
| Q |
1 |
tctacgtatgttaccttccattttatgtcatttaatgaaaaacgattttgcatgnnnnnnnnnnnnngtaatctttataggttatgtaatcctctaacat |
100 |
Q |
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| T |
1519107 |
tctacgtatgttaccttccattttatgtcatttaatgaaaaacgattttgcatgtttttgcttttttgtaatctttataggttatgtaatcctctaacat |
1519008 |
T |
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| Q |
101 |
acatagttcttttctattaaggcatggatatggaaagtggccagatatttttgatgataaggatctgaatatgttttctgtatgtcatttggtg |
194 |
Q |
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| T |
1519007 |
acatagttcttttctattaaggcatggatatggaaagtggccagatattgttgatgataaggatctgaatatgttttctgtatgtcatttggtg |
1518914 |
T |
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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 84 - 172
Target Start/End: Complemental strand, 2910852 - 2910768
Alignment:
| Q |
84 |
atgtaatcctctaacatacatagttcttttctattaaggcatggatatggaaagtggccagatatttttgatgataaggatctgaatat |
172 |
Q |
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| T |
2910852 |
atgtaatcctctaa----catagttcttttctattaaggcatggatatggaaagtggcatgatattgttgatgataaggatctgaatat |
2910768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 2910946 - 2910893
Alignment:
| Q |
1 |
tctacgtatgttaccttccattttatgtcatttaatgaaaaacgattttgcatg |
54 |
Q |
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| T |
2910946 |
tctacgtatgtcaccctccattttatttcattcaatgaaaaacgattttgcatg |
2910893 |
T |
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