View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10591_low_24 (Length: 240)
Name: NF10591_low_24
Description: NF10591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10591_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 2964640 - 2964822
Alignment:
| Q |
18 |
ctttaacactcatcaagaacatgcagagttttttcaaaaggaacatgcagagttgtaaacaaaatttagggaaagtaagtgcaacaaaggataaaattaa |
117 |
Q |
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| T |
2964640 |
ctttaacactcatcaagaacatgcagagttttttcaaaaggaacatgcagagttgtaaacaaaatttagggaaagtaagtgcaacaaaggataaaattaa |
2964739 |
T |
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| Q |
118 |
ccaaacaacaatgtcaaaagcatttagggacaaatttttaaaacatgtgatattttttgagtgcatgcgtttgatatatatat |
200 |
Q |
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| T |
2964740 |
ccaaacaacaatgtcaatagaatttagggacaaatttttataacatgtgatattttttgagtgcatgtgtttgatatatatat |
2964822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 2945316 - 2945346
Alignment:
| Q |
18 |
ctttaacactcatcaagaacatgcagagttt |
48 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
2945316 |
ctttaacactcatcaagaacatgcagagttt |
2945346 |
T |
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