View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10591_low_28 (Length: 228)
Name: NF10591_low_28
Description: NF10591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10591_low_28 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 36 - 206
Target Start/End: Complemental strand, 3334589 - 3334419
Alignment:
| Q |
36 |
caatattattagctttggcactcattttgaattactagataaatttattattattttttaaacatcctctttataaacaatactaatttgtttttgaaga |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3334589 |
caatattattagctttggcactcattttgaattactagataaatttattattattttttaaatatcctctttattaacaatactaatttgtttttgaaga |
3334490 |
T |
|
| Q |
136 |
tgaaaattcagaaatttacgatgctcgcgcacatttatagttggttacctgtaaagccaaattctaagtcc |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
3334489 |
tgaaaattcagaaatttacgatgctcgcgcacatttataattggttacctgtaaagccaaattctaagtcc |
3334419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University