View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10591_low_4 (Length: 445)
Name: NF10591_low_4
Description: NF10591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10591_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 102 - 427
Target Start/End: Complemental strand, 45758096 - 45757772
Alignment:
| Q |
102 |
attctcatatattctacttgttcattgctctaatatcataatacttcggtgctcttctcttatttgagatgatatctacaaaactcactcttccgtcatg |
201 |
Q |
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| T |
45758096 |
attctcatatattctacttgttcattgctcta-tatcataatacttcggtgctcttctcttatttgagatgatatctacaaaactcactcttccgtcatg |
45757998 |
T |
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| Q |
202 |
ttttggtcgaccaacgacctaaccgacaacattgtcaagtgtcccaccttgaggctggatagtggttgcagtgtggtgccggaacagcaacgtgaaggcg |
301 |
Q |
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| T |
45757997 |
ttttggtcgaccaacgacctaaccgacaacattgtcaagtgtcccaccttgaggctggatagtggttgcagtgtggtgccggaacagcaacgtgaaggcg |
45757898 |
T |
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| Q |
302 |
gtaatcaaccattgtgtaccgtagctgccatcatggtgtaaaagttttgcagcattaattattttgatcaatttatatttnnnnnnnttattttgttgtc |
401 |
Q |
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| T |
45757897 |
gtaatcaaccattgtgtaccgtagctgccatcatggtgtaaaagttttgcgtcattaattattttgatcaatttatattaaaataaattattttattgtc |
45757798 |
T |
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| Q |
402 |
catatagtacaacttagaaccgtgat |
427 |
Q |
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| T |
45757797 |
catatagtacaacttagaaccgtgat |
45757772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 45758160 - 45758094
Alignment:
| Q |
18 |
catgtgaggtgacgtataga---gtacacaaattattttttgtttaccgatacaaaaatggttaatt |
81 |
Q |
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| T |
45758160 |
catgtgaggtgacgtatagattagtacacaaattattttttgtttaccgatacaaaaatggttaatt |
45758094 |
T |
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