View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10591_low_6 (Length: 406)
Name: NF10591_low_6
Description: NF10591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10591_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 17 - 397
Target Start/End: Complemental strand, 4663494 - 4663119
Alignment:
| Q |
17 |
gaaataactttttcagggaaaccaaataaatgtgaaggagatgaggattaggatgatattgaacttcatggtgtttcaatgaagatgaactttggtgaac |
116 |
Q |
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| T |
4663494 |
gaaataactttttcagggaaaccaaat----gtgaaggagatgaggattaggatgatattgaacttcatggtgtttcaatgaagatgaactttggtgaac |
4663399 |
T |
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| Q |
117 |
aagagatgtaaaaagttacagggactagtttgtgcaaggcctaacactcaatttatgcggtttcccttaaaaaactcaatttatgcggttaagctttcaa |
216 |
Q |
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| T |
4663398 |
aagagatgtaaaaagttacagggactagtttgtgcaaggcctaacactcaatttatgcggtttcccttaaaaaactcaatttatgcggttaagctttcaa |
4663299 |
T |
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| Q |
217 |
tatgctgtgcccttagatattgattttatatatgaagtgattcacattttcgctcactaccaaaaaatattgaagcgtaccaaacaaaacggtttctcaa |
316 |
Q |
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| T |
4663298 |
tatgctgtgcccttagatattgattttatatatgaagtgattcacattttcgctcactaccaaaaaatattgaagcgt-ccaaacaaaacggtttctcaa |
4663200 |
T |
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| Q |
317 |
cattactattttattgaannnnnnnacaattaacataggaatggtgtggggtccatctaataaacccctagtcattcatct |
397 |
Q |
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| T |
4663199 |
cattactattttattgaatttttttacaattaacataggaatggtgtggtgtccatctaataaacccctggtcattcatct |
4663119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 17 - 174
Target Start/End: Complemental strand, 4666915 - 4666759
Alignment:
| Q |
17 |
gaaataactttttcagggaaaccaaataaatgtgaaggagatgaggattaggatgatattgaacttcatggtgtttcaatgaagatgaactttggtgaac |
116 |
Q |
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| T |
4666915 |
gaaataactttttcatggaaacaaaata----tgaaggaaatgaggattaggatgatattgaacttcatactgttttagtgaagatgaacttttgtgaac |
4666820 |
T |
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| Q |
117 |
aagagatgtaaaaagttacagggac---tagtttgtgcaaggcctaacactcaatttatgc |
174 |
Q |
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| T |
4666819 |
aagagatgtatgaagttatagggactagtagtttgtgcaaggcctaacactcaatttatgc |
4666759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 190 - 333
Target Start/End: Complemental strand, 4666771 - 4666625
Alignment:
| Q |
190 |
actcaatttatgcggttaagctttcaatatg-ctgtgcccttagatattgattttatatatgaagtgattcacattttcgct-cactaccaaaaaata-t |
286 |
Q |
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| T |
4666771 |
actcaatttatgctgtcaaacttttaatatggcggtgcccttagatattggttttatttatgaagtgattcacattttcgctccactccttaattgcact |
4666672 |
T |
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| Q |
287 |
tgaagcgtaccaaacaaaacggtttctcaacattactattttattga |
333 |
Q |
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| T |
4666671 |
tgaagcgtaccaaataaaaaggtttctcaacattactattttattga |
4666625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 397
Target Start/End: Complemental strand, 4666597 - 4666556
Alignment:
| Q |
356 |
aatggtgtggggtccatctaataaacccctagtcattcatct |
397 |
Q |
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| T |
4666597 |
aatggtgtggggtccatctaataaacccttggtcattcatct |
4666556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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