View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10592_1 (Length: 372)
Name: NF10592_1
Description: NF10592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10592_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 32234582 - 32234903
Alignment:
| Q |
1 |
aatgtgactctccgacatacaattctaattatagtgatcgatcattatatctaactaaattgtaagtaagaggttgatatcttccaacaactattttttc |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
32234582 |
aatgtgactctccgacacacaattctaattatagtgattgatcattatatctaactaaattgtaagtaagaagttgacatcttccaacaactatttttca |
32234681 |
T |
|
| Q |
101 |
atttgtacaattagaaaatcaaacccccaactaaatggttaaaaatgcaatgtttgtaaacattaaatatatattgtgcttaaaaagaaatttgtttatc |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||| | ||||| ||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
32234682 |
atttgtacaattagattatcaaacccccaactaagtggttaaaaataccatgttggtaaacattaa----atattgtacttaaaaagaaatttgtttatc |
32234777 |
T |
|
| Q |
201 |
attaacaacacccttaaacatataatcaaaacatgatat-aagcataattaaagcaacatactatgtcatatatttcatgggatcaattcaaatacacca |
299 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32234778 |
attaacaacacccttaaacaaataatcaaaacatgatataaagcataattaaagcaacatactatgtcatatatttcatgggatcaattcaaatacacca |
32234877 |
T |
|
| Q |
300 |
aactccatctatacatgaatatattt |
325 |
Q |
| |
|
||||||||||||||| |||||||||| |
|
|
| T |
32234878 |
aactccatctatacaagaatatattt |
32234903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University