View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10592_3 (Length: 321)
Name: NF10592_3
Description: NF10592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10592_3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 31666893 - 31666573
Alignment:
| Q |
1 |
ctctcgcaaacaaaacttaactaactatgtaactgattattgtaagttgcaactaactattatgaaagttaactaattactgtaactaattattgcaact |
100 |
Q |
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| T |
31666893 |
ctctcgcaaacaaaacttaactaactatgtaactgattattgtaagttgcaactaactattatgaaagttaactaattactgtaactaattattgcaact |
31666794 |
T |
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| Q |
101 |
aactcttccgatgaaacttaactataactgattattgtaattaactattacgtctaataaatggtttaccgggaaatggaatgcgaagatcgaggacgca |
200 |
Q |
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| T |
31666793 |
aactcttccgatgaaacttaactataactgattattgtaattaactattacgtctaataaatggtttaccgggaaatggaatgcgaagatcgaggacgca |
31666694 |
T |
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| Q |
201 |
gagagtgcgatcctcttgagattttcttcgaccttggagcattgcagagtggcaacgtgtggtgtattgaggacgagaattgtgatcgaagaggttccag |
300 |
Q |
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| T |
31666693 |
gagagtgcgatcctcttgagattttcttcgaccttggagcattgcagagtggcaacgtgtggtgtattgaggacgagaattgtgatcgaagaggttccag |
31666594 |
T |
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| Q |
301 |
cgagggcattttggggattgg |
321 |
Q |
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| T |
31666593 |
cgagggcattttggggattgg |
31666573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 158
Target Start/End: Original strand, 486608 - 486641
Alignment:
| Q |
125 |
taactgattattgtaattaactattacgtctaat |
158 |
Q |
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| T |
486608 |
taactgattattgtaactaactattacgtctaat |
486641 |
T |
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