View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10592_low_1 (Length: 413)
Name: NF10592_low_1
Description: NF10592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10592_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 11 - 397
Target Start/End: Complemental strand, 28172909 - 28172527
Alignment:
| Q |
11 |
acatcaaaataaact--gagactagctaataatgcggcttcaccagcaagaacatgagccaccacatttgttgactgtcgactaaacttcaccccaagag |
108 |
Q |
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| T |
28172909 |
acatcaaaataaactatgagactagcgaataatgtggcttcaccagcaagaacatgagccgccacatttgttggctgtcgactaaacttcaccccaagag |
28172810 |
T |
|
| Q |
109 |
tttgtaaaagatgaggaaaagagattccagtatgttgtaatgacgtaaccgaactttgtaacatcataacaagagagttgaaagtatcaactttactttt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
28172809 |
tttgtaaaagatgaggaaaagagattccagtatgttgtaatgacgtaaccgaactttgtaacatcataacaagagagttgaaagtatcaactttaccttt |
28172710 |
T |
|
| Q |
209 |
gagtcaaccacaaaatcgacactatcgaattgcatatctaccaaccattgcaacatatgtagtaatccaagggcttcaccaatgtcaaccgggtattttg |
308 |
Q |
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|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28172709 |
gagtcaaccacaaaatcgaccctatcgaattgcatatccgccaaccattgcaacatatgtagtaatccaagggcttcaccaatgtcaaccgggtattttg |
28172610 |
T |
|
| Q |
309 |
tggagaagctcaaagtttgagcaatcacatatgtaccatctttcaggtagtctcaatccattctatcataaagtcttatagtaagcaac |
397 |
Q |
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| T |
28172609 |
tggagaagctcaaagtttgagcaatcacat-----ccatctttcaggtagtctcaatccattctatcat-aagtcttatagtaagcaac |
28172527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 87 - 346
Target Start/End: Complemental strand, 10140860 - 10140600
Alignment:
| Q |
87 |
cgactaaacttcaccccaagagtttgtaaaagatgaggaaaagagattccagtatgttgtaatgacgtaaccgaactttgtaacatcataacaaga-gag |
185 |
Q |
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|||||||||| || ||| |||||||||||||||| ||||||| |||||| ||||||||||||||| | |||||| ||||||||||| || ||| ||| |
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| T |
10140860 |
cgactaaact-caaccctagagtttgtaaaagataaggaaaaaagattctgacatgttgtaatgacgtgatcgaactctgtaacatcatgacgagaagag |
10140762 |
T |
|
| Q |
186 |
ttgaaagtatcaact-ttacttttgagtcaaccacaaaatcgacactatcgaattgcatatctaccaaccattgcaacatatgtagtaatccaagggctt |
284 |
Q |
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||||||| |||| | |||| || ||| |||||||||||||||| ||||| ||||| | | | ||||||||||||| || ||| |||||||| |||| |
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| T |
10140761 |
ttgaaagcatcatatgttaccttcgaggcaaccacaaaatcgaccctatcagcctgcatgtttgcaaaccattgcaacacatatagcaatccaagagctt |
10140662 |
T |
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| Q |
285 |
caccaatgtcaaccgggtattttgtggagaagctcaaagtttgagcaatcacatatgtacca |
346 |
Q |
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| T |
10140661 |
caccaacgtcaaccgagtattttgcagagaagctcataatttgagcaagcacacatgtacca |
10140600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 85 - 333
Target Start/End: Complemental strand, 10037760 - 10037511
Alignment:
| Q |
85 |
gtcgactaaacttcaccccaagagtttgtaaaagatgaggaaaagagattccagtatgttgtaatgacgtaaccgaactttgtaacatcataacaaga-g |
183 |
Q |
| |
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|||||||||||| ||||| | |||||||| ||||| || |||||||| |||| ||| ||||||||||| | |||||| |||| ||| ||||| ||| | |
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| T |
10037760 |
gtcgactaaactccacccta-gagtttgtgaaagaggatgaaaagaggttccgacatgctgtaatgacgtgatcgaactctgtatcattataacgagaag |
10037662 |
T |
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| Q |
184 |
agttgaaagtatcaa-ctttacttttgagtcaaccacaaaatcgacactatcgaattgcatatctaccaaccattgcaacatatgtagtaatccaagggc |
282 |
Q |
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|||||||| |||| | ||| |||||| | ||||||||||||||| |||||||||||||| ||||||||||||| || |||||| ||||||||||| |
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| T |
10037661 |
tgttgaaagcatcaggcgttaactttgagcccaccacaaaatcgacattatcgaattgcatagctaccaaccattgtaatgcatgtagcaatccaagggc |
10037562 |
T |
|
| Q |
283 |
ttcaccaatgtcaaccgggtattttgtggagaagctcaaagtttgagcaat |
333 |
Q |
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||||| | |||| ||||||||| ||||||||||||| ||||| |||||| |
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| T |
10037561 |
ttcactgacatcaatcgggtatttcgtggagaagctcacagttttagcaat |
10037511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 258
Target Start/End: Complemental strand, 32111809 - 32111697
Alignment:
| Q |
148 |
atgacgtaaccgaactttgtaacatcataacaa-gagagttgaaagtatcaact-ttacttttgagtcaaccacaaaatcgacactatcgaattgcatat |
245 |
Q |
| |
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||||||| ||| |||| |||||||||| || | |||| ||||||| |||| || |||| |||||||| |||||||||| ||| ||||||||||||| | |
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| T |
32111809 |
atgacgtgaccaaactctgtaacatcaagacgatgagaattgaaagcatcagctattacctttgagtccgccacaaaatcaacattatcgaattgcatgt |
32111710 |
T |
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| Q |
246 |
ctaccaaccattg |
258 |
Q |
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|| |||||||||| |
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| T |
32111709 |
ctgccaaccattg |
32111697 |
T |
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