View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10593_low_1 (Length: 351)
Name: NF10593_low_1
Description: NF10593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10593_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 341
Target Start/End: Original strand, 48490846 - 48491169
Alignment:
| Q |
18 |
gtttataaactaccttatatttgattcctaaataatgtgagactttttggtgtaccgaaccaatgctaaaggcacccaaccatcgcatatgtttgcttat |
117 |
Q |
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| T |
48490846 |
gtttataaactaccttatattcgattcctaaataatgtgagactttttggtgtaccggaccaatgctaaaggcacccaaccatcgcatatgtttgcttat |
48490945 |
T |
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| Q |
118 |
ttgtgaaactcaatagagaataaataataaggacaatagagaaccacaatcagaattattattagattagattgaaaaaacacaactatacatggataga |
217 |
Q |
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| T |
48490946 |
ttgtgaaactcaatagagaataaataataaggacaatagagaaccacaatcatcattattattagattagattgaaaaaacacaactatacatggataga |
48491045 |
T |
|
| Q |
218 |
aatagtaaattatagctctaatgaacaaggttacacttctaccactttgcttcactcatcattaagccatttaattacataacccctttagaaagcattc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
48491046 |
aatagtaaattatagctctaatgaacaaggttacacttctaccactttgcttcactcatcattaagccatttaattacatagcccctttagaaagcattc |
48491145 |
T |
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| Q |
318 |
actcataaaaaggtctactctctg |
341 |
Q |
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| T |
48491146 |
actcataaaaaggtctactctctg |
48491169 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 282 - 341
Target Start/End: Complemental strand, 45063021 - 45062962
Alignment:
| Q |
282 |
agccatttaattacataacccctttagaaagcattcactcataaaaaggtctactctctg |
341 |
Q |
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| T |
45063021 |
agccatttaattacattgtcccttaataaaacattcactcataaaaaggtctacactctg |
45062962 |
T |
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