View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10593_low_2 (Length: 307)

Name: NF10593_low_2
Description: NF10593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10593_low_2
NF10593_low_2
[»] chr4 (21 HSPs)
chr4 (20-132)||(2624405-2624515)
chr4 (228-283)||(2624254-2624309)
chr4 (61-132)||(51317894-51317964)
chr4 (61-131)||(21090062-21090131)
chr4 (61-132)||(10389864-10389934)
chr4 (62-132)||(37188704-37188773)
chr4 (75-132)||(5333584-5333640)
chr4 (61-101)||(25273818-25273858)
chr4 (61-101)||(43154132-43154172)
chr4 (62-101)||(1531845-1531884)
chr4 (62-101)||(8009471-8009510)
chr4 (61-132)||(34024547-34024617)
chr4 (61-99)||(29965574-29965612)
chr4 (61-131)||(43444302-43444371)
chr4 (61-99)||(53616762-53616800)
chr4 (20-101)||(35965045-35965126)
chr4 (61-101)||(9645660-9645700)
chr4 (61-132)||(12265363-12265434)
chr4 (61-101)||(38706821-38706861)
chr4 (63-99)||(47416824-47416860)
chr4 (61-101)||(56194537-56194577)
[»] chr8 (15 HSPs)
chr8 (20-132)||(15597237-15597348)
chr8 (20-115)||(15046813-15046908)
chr8 (20-129)||(39153212-39153324)
chr8 (61-128)||(35580365-35580431)
chr8 (61-132)||(14907035-14907105)
chr8 (61-132)||(11196795-11196863)
chr8 (61-132)||(9498713-9498783)
chr8 (62-101)||(32724601-32724640)
chr8 (61-132)||(34611707-34611777)
chr8 (61-132)||(42448139-42448209)
chr8 (62-132)||(2655772-2655841)
chr8 (62-99)||(4808899-4808936)
chr8 (61-129)||(17427329-17427396)
chr8 (61-101)||(17430979-17431019)
chr8 (61-101)||(33298789-33298829)
[»] chr1 (23 HSPs)
chr1 (20-130)||(39927624-39927734)
chr1 (61-132)||(28035039-28035109)
chr1 (11-132)||(41081765-41081885)
chr1 (20-101)||(18569380-18569461)
chr1 (61-132)||(14545420-14545490)
chr1 (61-132)||(35584732-35584802)
chr1 (63-132)||(38520646-38520714)
chr1 (61-132)||(25728070-25728140)
chr1 (61-128)||(40646592-40646658)
chr1 (61-99)||(7997719-7997757)
chr1 (62-132)||(30818457-30818526)
chr1 (23-132)||(25406357-25406465)
chr1 (61-101)||(34519063-34519103)
chr1 (63-102)||(5600704-5600743)
chr1 (61-132)||(5701157-5701227)
chr1 (63-130)||(27872641-27872707)
chr1 (61-128)||(40881124-40881190)
chr1 (61-132)||(51868756-51868826)
chr1 (62-128)||(20266206-20266271)
chr1 (63-101)||(33291531-33291569)
chr1 (61-101)||(9172418-9172458)
chr1 (61-101)||(9180400-9180440)
chr1 (61-101)||(11453866-11453906)
[»] chr6 (16 HSPs)
chr6 (20-115)||(25337482-25337577)
chr6 (61-132)||(12165737-12165807)
chr6 (61-132)||(23947428-23947498)
chr6 (66-132)||(4352116-4352182)
chr6 (62-132)||(12652836-12652905)
chr6 (61-101)||(4468485-4468525)
chr6 (61-101)||(8196518-8196558)
chr6 (63-131)||(17334672-17334739)
chr6 (61-132)||(8496861-8496931)
chr6 (62-132)||(4088355-4088425)
chr6 (62-128)||(7876157-7876222)
chr6 (61-99)||(25064163-25064201)
chr6 (61-99)||(33109762-33109800)
chr6 (62-99)||(7881215-7881252)
chr6 (64-128)||(16419058-16419121)
chr6 (61-101)||(33740689-33740729)
[»] chr5 (20 HSPs)
chr5 (61-132)||(43261928-43261998)
chr5 (61-132)||(781288-781358)
chr5 (61-132)||(26578148-26578218)
chr5 (61-99)||(27751857-27751895)
chr5 (61-101)||(20257805-20257845)
chr5 (61-101)||(27266971-27267011)
chr5 (23-99)||(2057911-2057987)
chr5 (61-132)||(10649352-10649422)
chr5 (61-132)||(30371623-30371693)
chr5 (62-101)||(34881638-34881677)
chr5 (62-132)||(28235484-28235553)
chr5 (61-99)||(30298139-30298177)
chr5 (63-100)||(1696979-1697016)
chr5 (63-132)||(7150448-7150516)
chr5 (62-99)||(35475448-35475485)
chr5 (67-131)||(3166259-3166322)
chr5 (61-101)||(7241711-7241751)
chr5 (61-101)||(7246887-7246927)
chr5 (61-101)||(18677577-18677617)
chr5 (61-101)||(42579809-42579849)
[»] chr7 (17 HSPs)
chr7 (61-132)||(20116479-20116549)
chr7 (61-132)||(26583610-26583680)
chr7 (61-101)||(32684611-32684651)
chr7 (61-101)||(35667342-35667382)
chr7 (62-101)||(1448941-1448980)
chr7 (62-101)||(26492291-26492330)
chr7 (73-128)||(35261197-35261252)
chr7 (61-99)||(2843338-2843376)
chr7 (61-99)||(21266320-21266358)
chr7 (62-132)||(46821910-46821979)
chr7 (64-97)||(3860882-3860915)
chr7 (20-53)||(17611099-17611132)
chr7 (63-132)||(45199144-45199212)
chr7 (62-99)||(46338981-46339018)
chr7 (61-101)||(35496286-35496326)
chr7 (61-101)||(42311206-42311246)
chr7 (63-99)||(48207830-48207866)
[»] chr2 (22 HSPs)
chr2 (61-132)||(32680693-32680763)
chr2 (62-132)||(40660043-40660110)
chr2 (61-132)||(3270339-3270409)
chr2 (61-132)||(6173532-6173602)
chr2 (61-132)||(39641970-39642040)
chr2 (64-101)||(3725111-3725148)
chr2 (63-132)||(4228032-4228100)
chr2 (62-123)||(34598897-34598957)
chr2 (20-101)||(17319254-17319333)
chr2 (61-132)||(27249262-27249332)
chr2 (61-132)||(30420577-30420647)
chr2 (62-101)||(31581831-31581870)
chr2 (62-132)||(21570520-21570589)
chr2 (61-99)||(32913174-32913212)
chr2 (62-132)||(36233905-36233974)
chr2 (61-99)||(42949647-42949685)
chr2 (20-101)||(459344-459425)
chr2 (61-101)||(2808581-2808621)
chr2 (61-101)||(9986456-9986496)
chr2 (61-101)||(22421666-22421706)
chr2 (61-101)||(26025520-26025560)
chr2 (61-97)||(27949357-27949393)
[»] chr3 (16 HSPs)
chr3 (61-132)||(38440688-38440758)
chr3 (62-128)||(4178462-4178527)
chr3 (61-101)||(4172490-4172530)
chr3 (61-101)||(25631638-25631678)
chr3 (61-132)||(3850566-3850636)
chr3 (61-132)||(36906015-36906085)
chr3 (61-132)||(42719414-42719484)
chr3 (61-99)||(32607393-32607431)
chr3 (61-99)||(35499312-35499350)
chr3 (61-99)||(50611528-50611566)
chr3 (61-130)||(25162332-25162399)
chr3 (64-101)||(31794003-31794040)
chr3 (63-99)||(14464433-14464469)
chr3 (61-101)||(17237726-17237766)
chr3 (61-101)||(39917507-39917547)
chr3 (65-101)||(46934566-46934602)
[»] scaffold0311 (1 HSPs)
scaffold0311 (61-115)||(8633-8686)
[»] scaffold0014 (1 HSPs)
scaffold0014 (62-99)||(201483-201520)
[»] scaffold0146 (1 HSPs)
scaffold0146 (61-101)||(16433-16473)


Alignment Details
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 132
Target Start/End: Complemental strand, 2624515 - 2624405
Alignment:
Q  20 cacaccaccacactcggatgacgaaatcatgaagnnnnnnncctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgat 119  Q
    |||||||||||||||  |||||||||||| ||||       ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  2624515 cacaccaccacactc--atgacgaaatcacgaagaaaaaaacctagatctatgtgaaaatcacttatttagattgaaatagactataaaaagatgatgat 2624418  T
Q  120 gagtgatttcagg 132  Q
    |||| ||||||||    
T  2624417 gagttatttcagg 2624405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 228 - 283
Target Start/End: Complemental strand, 2624309 - 2624254
Alignment:
Q  228 gtttctcgaactcttggttgatgttgtttttaaataaataaactcattatttctat 283  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2624309 gtttctcgaacttttggttgatgttgtttttaaataaataaactcattatttctat 2624254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 51317964 - 51317894
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcagg 132  Q
    ||||||||||| ||||||||||||||||| |||||||||||  | |||||||||| ||||||||||||||||    
T  51317964 cctagatctatgtgaaaatcacttatttagattgaaataga-gagaaaaagatgaagatgagtgatttcagg 51317894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 131
Target Start/End: Complemental strand, 21090131 - 21090062
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcag 131  Q
    |||| |||||| |||||||||||||||||||||||||||||  | |||||||||| |||||||||||||||    
T  21090131 cctaaatctatgtgaaaatcacttatttatattgaaataga-gagaaaaagatgaagatgagtgatttcag 21090062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 10389864 - 10389934
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcagg 132  Q
    ||||||||||| ||||| ||||||||||| |||||||||||  | |||||||||| ||||||||||||||||    
T  10389864 cctagatctatgtgaaagtcacttatttagattgaaataga-gagaaaaagatgaagatgagtgatttcagg 10389934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 132
Target Start/End: Original strand, 37188704 - 37188773
Alignment:
Q  62 ctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcagg 132  Q
    |||||| ||| ||||||||||||||||| ||||||||| |  | |||||||||| ||||||||||||||||    
T  37188704 ctagatatatgtgaaaatcacttatttagattgaaatata-gagaaaaagatgaagatgagtgatttcagg 37188773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 132
Target Start/End: Original strand, 5333584 - 5333640
Alignment:
Q  75 aaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcagg 132  Q
    |||||||||||||||||||||||||||  | |||||||||| |||| |||||||||||    
T  5333584 aaaatcacttatttatattgaaataga-gagaaaaagatgaagatgtgtgatttcagg 5333640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 25273858 - 25273818
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaataga 101  Q
    ||||||||||| ||||||||||||||||| |||||||||||    
T  25273858 cctagatctatgtgaaaatcacttatttagattgaaataga 25273818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 43154132 - 43154172
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaataga 101  Q
    ||||||||||| ||||||||||||||||| |||||||||||    
T  43154132 cctagatctatgtgaaaatcacttatttagattgaaataga 43154172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 101
Target Start/End: Complemental strand, 1531884 - 1531845
Alignment:
Q  62 ctagatctatctgaaaatcacttatttatattgaaataga 101  Q
    |||||||||| ||||||||||||||||| |||||||||||    
T  1531884 ctagatctatgtgaaaatcacttatttagattgaaataga 1531845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 101
Target Start/End: Original strand, 8009471 - 8009510
Alignment:
Q  62 ctagatctatctgaaaatcacttatttatattgaaataga 101  Q
    |||||||||| ||||||||||||||||| |||||||||||    
T  8009471 ctagatctatgtgaaaatcacttatttagattgaaataga 8009510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 34024547 - 34024617
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcagg 132  Q
    ||||||||||| ||||||| ||||||||| |||||||||||  | |||||||||| || | |||||||||||    
T  34024547 cctagatctatgtgaaaataacttatttagattgaaataga-gagaaaaagatgaagaggggtgatttcagg 34024617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 99
Target Start/End: Complemental strand, 29965612 - 29965574
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaata 99  Q
    ||||||||||| ||||||||||||||||| |||||||||    
T  29965612 cctagatctatgtgaaaatcacttatttagattgaaata 29965574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 131
Target Start/End: Complemental strand, 43444371 - 43444302
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcag 131  Q
    ||||||| ||| ||||||||||||||||| ||||||||| |  | |||||||||| |||| ||||||||||    
T  43444371 cctagatatatgtgaaaatcacttatttagattgaaata-aagagaaaaagatgaagatgggtgatttcag 43444302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 99
Target Start/End: Original strand, 53616762 - 53616800
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaata 99  Q
    ||||||||||| ||||||||||||||||| |||||||||    
T  53616762 cctagatctatgtgaaaatcacttatttagattgaaata 53616800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 35965045 - 35965126
Alignment:
Q  20 cacaccaccacactcggatgacgaaatcatgaagnnnnnnncctagatctatctg-aaaatcacttatttatattgaaataga 101  Q
    ||||||||||||||||||||||||||||| |||        ||||||||||| || ||||||||||||| | |||||||||||    
T  35965045 cacaccaccacactcggatgacgaaatcacgaa-aaaaaaacctagatctatgtgaaaaatcacttattcagattgaaataga 35965126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 9645660 - 9645700
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaataga 101  Q
    ||||||||||| ||||| ||||||||||| |||||||||||    
T  9645660 cctagatctatgtgaaagtcacttatttagattgaaataga 9645700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 12265434 - 12265363
Alignment:
Q  61 cctagatctatctgaaaa-tcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcagg 132  Q
    ||||||||||| |||||| ||||||||||| ||||||||||   |||||||||||| || | |||||||||||    
T  12265434 cctagatctatgtgaaaaatcacttatttagattgaaatag-ggataaaaagatgaagaggggtgatttcagg 12265363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 38706821 - 38706861
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaataga 101  Q
    |||| |||||| ||||||||||||||||| |||||||||||    
T  38706821 cctaaatctatgtgaaaatcacttatttagattgaaataga 38706861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 99
Target Start/End: Complemental strand, 47416860 - 47416824
Alignment:
Q  63 tagatctatctgaaaatcacttatttatattgaaata 99  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  47416860 tagatctatgtgaaaatcacttatttagattgaaata 47416824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 56194577 - 56194537
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaataga 101  Q
    ||||||||||| ||||| ||||||||||| |||||||||||    
T  56194577 cctagatctatgtgaaagtcacttatttagattgaaataga 56194537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 132
Target Start/End: Original strand, 15597237 - 15597348
Alignment:
Q  20 cacaccaccacactcggatgacgaaatcatgaagnnnnnnncctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgat 119  Q
    |||||||| |||||||||||||||||||||||||       ||||||||||| ||||||||||||||||| |||||||| ||||| |||||||||| ||     
T  15597237 cacaccactacactcggatgacgaaatcatgaagaaaaaa-cctagatctatgtgaaaatcacttatttagattgaaatggactagaaaaagatgaagag 15597335  T
Q  120 gagtgatttcagg 132  Q
    | |||||||||||    
T  15597336 gggtgatttcagg 15597348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 15046908 - 15046813
Alignment:
Q  20 cacaccaccacactcggatgacgaaatcatgaagnnnnnnncctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatga 115  Q
    ||||||||||||||||||||||||||||| ||||       ||||||||||| ||||||||||||| ||  |||||||| ||||| ||||||||||    
T  15046908 cacaccaccacactcggatgacgaaatcacgaagaaaaaaacctagatctatgtgaaaatcacttacttgaattgaaatggactagaaaaagatga 15046813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 39153212 - 39153324
Alignment:
Q  20 cacaccaccacactcggatgacgaaatcatgaagnnnnnnn---cctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgat 116  Q
    ||||||||||||||||||||||||||||| ||||          |||| |||||| ||||||||||||||||| |||||||| ||||| | ||||||||     
T  39153212 cacaccaccacactcggatgacgaaatcacgaagaaaaaaaatacctaaatctatgtgaaaatcacttatttaaattgaaattgactagacaaagatgaa 39153311  T
Q  117 gatgagtgatttc 129  Q
    |||||||||||||    
T  39153312 gatgagtgatttc 39153324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 128
Target Start/End: Complemental strand, 35580431 - 35580365
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgattt 128  Q
    ||||||||||| ||||||||||||||||| |||||||||||  | |||||||||| ||||||||||||    
T  35580431 cctagatctatgtgaaaatcacttatttaaattgaaataga-gagaaaaagatgaagatgagtgattt 35580365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 14907035 - 14907105
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcagg 132  Q
    ||||||||||| ||||||||||||||||| ||||||||| |  | |||||||||| |||| |||||||||||    
T  14907035 cctagatctatgtgaaaatcacttatttagattgaaata-aagagaaaaagatgaagatgggtgatttcagg 14907105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 11196863 - 11196795
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcagg 132  Q
    ||||||||||| ||||||||||||||||| ||||||||||   | |||||||||| ||||  ||||||||||    
T  11196863 cctagatctatgtgaaaatcacttatttagattgaaatag---agaaaaagatgaagatggatgatttcagg 11196795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 9498713 - 9498783
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcagg 132  Q
    |||| |||||| ||||||||||||||||| ||||||||| |  |||||||||||| || | |||||||||||    
T  9498713 cctaaatctatgtgaaaatcacttatttagattgaaata-aagataaaaagatgaagaggggtgatttcagg 9498783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 101
Target Start/End: Original strand, 32724601 - 32724640
Alignment:
Q  62 ctagatctatctgaaaatcacttatttatattgaaataga 101  Q
    |||||||||| ||||||||||||||||| |||||||||||    
T  32724601 ctagatctatgtgaaaatcacttatttagattgaaataga 32724640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 34611777 - 34611707
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcagg 132  Q
    ||||||| ||| ||||||||||||||||| | |||||||||  | ||||| |||| ||||||||||||||||    
T  34611777 cctagatttatgtgaaaatcacttatttagactgaaataga-aagaaaaatatgaagatgagtgatttcagg 34611707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 42448139 - 42448209
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcagg 132  Q
    ||||||||||| || |||||||||||||| |||||||||||  | |||||||||| || | |||||||||||    
T  42448139 cctagatctatatgtaaatcacttatttagattgaaataga-gagaaaaagatgaagaggggtgatttcagg 42448209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 132
Target Start/End: Complemental strand, 2655841 - 2655772
Alignment:
Q  62 ctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcagg 132  Q
    |||||||||| ||||||||||||||||| ||||||||| |  | |||||||||| |||| |||||| ||||    
T  2655841 ctagatctatgtgaaaatcacttatttagattgaaata-aagagaaaaagatgaagatgggtgattgcagg 2655772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 99
Target Start/End: Complemental strand, 4808936 - 4808899
Alignment:
Q  62 ctagatctatctgaaaatcacttatttatattgaaata 99  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  4808936 ctagatctatgtgaaaatcacttatttacattgaaata 4808899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 129
Target Start/End: Original strand, 17427329 - 17427396
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttc 129  Q
    ||||||||||| |||||| |||||||||| | |||||||||  | ||||||||||||||| | ||||||    
T  17427329 cctagatctatttgaaaagcacttatttacactgaaataga-gagaaaaagatgatgatgggggatttc 17427396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 17430979 - 17431019
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaataga 101  Q
    |||||||||||||||||| |||||||||| ||||| |||||    
T  17430979 cctagatctatctgaaaagcacttatttagattgacataga 17431019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 33298829 - 33298789
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaataga 101  Q
    ||||||||||| ||||||||||||||||| |||||| ||||    
T  33298829 cctagatctatgtgaaaatcacttatttagattgaattaga 33298789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 20 - 130
Target Start/End: Original strand, 39927624 - 39927734
Alignment:
Q  20 cacaccaccacactcggatgacgaaatcatgaagnnnnnnncctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgat 119  Q
    ||||||||||||||||||||||||||||| ||||        |||||||||||||||||| | ||||||| ||||||||||||||||| ||||||| ||     
T  39927624 cacaccaccacactcggatgacgaaatcacgaagaaaaaaatctagatctatctgaaaattatttatttagattgaaatagactataacaagatgaagag 39927723  T
Q  120 gagtgatttca 130  Q
     ||||||||||    
T  39927724 aagtgatttca 39927734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 28035109 - 28035039
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcagg 132  Q
    ||||||||||| ||||||||||||||||| |||||||||||  | |||||||||| ||||||||||||||||    
T  28035109 cctagatctatgtgaaaatcacttatttagattgaaataga-gagaaaaagatgaagatgagtgatttcagg 28035039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 11 - 132
Target Start/End: Original strand, 41081765 - 41081885
Alignment:
Q  11 gatggacatcacaccaccacactcggatgacgaaatcatgaagnnnnnnncctagatctatctgaaaatcacttatttatattgaaatagactataaaaa 110  Q
    |||| ||| ||||||||||||||||||||||||| ||| || |       |||||||||||  | ||||||||||| || |||||||| ||||| |||||    
T  41081765 gatgaacaacacaccaccacactcggatgacgaagtcacgatgaaaaaa-cctagatctatgcgcaaatcacttatatagattgaaatggactagaaaaa 41081863  T
Q  111 gatgatgatgagtgatttcagg 132  Q
    ||||| ||||||||||||||||    
T  41081864 gatgaagatgagtgatttcagg 41081885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 18569380 - 18569461
Alignment:
Q  20 cacaccaccacactcggatgacgaaatcatgaagnnnnnnncctagatctatctgaaaatcacttatttatattgaaataga 101  Q
    |||||||||||||||  |||||||||||| ||||       ||||||||||| ||||||||||||||||| |||||||||||    
T  18569380 cacaccaccacactcaaatgacgaaatcacgaagaagaaaacctagatctatgtgaaaatcacttatttagattgaaataga 18569461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 14545490 - 14545420
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcagg 132  Q
    ||||||||||| ||||||||||||||||| ||||||||| |  | |||||||||| ||||||||||||||||    
T  14545490 cctagatctatgtgaaaatcacttatttagattgaaatata-gagaaaaagatgaagatgagtgatttcagg 14545420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 35584732 - 35584802
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcagg 132  Q
    ||||||||||| ||||||||||||||||| ||||||||| |  | |||||||||| ||||||||||||||||    
T  35584732 cctagatctatgtgaaaatcacttatttagattgaaata-aagagaaaaagatgaagatgagtgatttcagg 35584802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 132
Target Start/End: Original strand, 38520646 - 38520714
Alignment:
Q  63 tagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcagg 132  Q
    ||||||||| ||||||||||||||||| || ||||||||  | |||||||||| ||||||||||||||||    
T  38520646 tagatctatgtgaaaatcacttatttagatcgaaataga-gagaaaaagatgaagatgagtgatttcagg 38520714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 25728070 - 25728140
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcagg 132  Q
    ||||||||||| ||||||||||||||||| ||||||||| |  | |||||||||| || |||||||||||||    
T  25728070 cctagatctatgtgaaaatcacttatttagattgaaata-aagagaaaaagatgaagaggagtgatttcagg 25728140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 128
Target Start/End: Complemental strand, 40646658 - 40646592
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgattt 128  Q
    ||||||||||  ||||||||||||||||| ||||||||| | || |||||||||| ||||||||||||    
T  40646658 cctagatctacgtgaaaatcacttatttagattgaaata-aatagaaaaagatgaagatgagtgattt 40646592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 99
Target Start/End: Complemental strand, 7997757 - 7997719
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaata 99  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  7997757 cctagatctatgtgaaaatcacttatttatattgaaata 7997719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 132
Target Start/End: Original strand, 30818457 - 30818526
Alignment:
Q  62 ctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcagg 132  Q
    |||||| ||| ||||||||||||||||| |||||||||||  | |||||||||| |||| |||||||||||    
T  30818457 ctagatttatgtgaaaatcacttatttagattgaaataga-gagaaaaagatgaagatgggtgatttcagg 30818526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 132
Target Start/End: Original strand, 25406357 - 25406465
Alignment:
Q  23 accaccacactcggatgacgaaatcatgaagnnnnnnncctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgag 122  Q
    |||||||||||  |||||||||||||  |||       ||||||||||| ||||| ||||||||||| |||||||||||  | |||||||||| || | |    
T  25406357 accaccacacttagatgacgaaatcacaaagaaaaaaacctagatctatgtgaaagtcacttatttagattgaaataga-gagaaaaagatgaagaggtg 25406455  T
Q  123 tgatttcagg 132  Q
    ||||||||||    
T  25406456 tgatttcagg 25406465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 34519103 - 34519063
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaataga 101  Q
    ||||||||||| ||||||||||||||||| |||||||||||    
T  34519103 cctagatctatgtgaaaatcacttatttagattgaaataga 34519063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 102
Target Start/End: Complemental strand, 5600743 - 5600704
Alignment:
Q  63 tagatctatctgaaaatcacttatttatattgaaatagac 102  Q
    ||||||||||| ||||||||||||||| ||||||||||||    
T  5600743 tagatctatctaaaaatcacttatttaaattgaaatagac 5600704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 5701227 - 5701157
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcagg 132  Q
    ||||||||||| ||||||||||||||||| ||||||||| |  | |||||||||| || | |||||||||||    
T  5701227 cctagatctatgtgaaaatcacttatttaaattgaaata-aagagaaaaagatgaagaggggtgatttcagg 5701157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 130
Target Start/End: Complemental strand, 27872707 - 27872641
Alignment:
Q  63 tagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttca 130  Q
    ||||||||| ||||||||||||||||| |||||||||||    |||||||||| |||| |||||||||    
T  27872707 tagatctatgtgaaaatcacttatttagattgaaataga-gcgaaaaagatgaagatgggtgatttca 27872641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 128
Target Start/End: Original strand, 40881124 - 40881190
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgattt 128  Q
    ||||||||||  ||||||||||| ||||| |||||||||||  | |||||||||| ||||||||||||    
T  40881124 cctagatctaagtgaaaatcactcatttagattgaaataga-gagaaaaagatgaagatgagtgattt 40881190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 51868756 - 51868826
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcagg 132  Q
    ||||||||||| ||||| ||||||||||| |||||||||||  | |||||||||| || | |||||||||||    
T  51868756 cctagatctatgtgaaagtcacttatttagattgaaataga-gagaaaaagatgaagaggggtgatttcagg 51868826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 128
Target Start/End: Complemental strand, 20266271 - 20266206
Alignment:
Q  62 ctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgattt 128  Q
    |||||||||| ||||||||||||||||| ||||||||| |  | |||||||||| |||| |||||||    
T  20266271 ctagatctatgtgaaaatcacttatttagattgaaata-aagagaaaaagatgaagatgggtgattt 20266206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 101
Target Start/End: Original strand, 33291531 - 33291569
Alignment:
Q  63 tagatctatctgaaaatcacttatttatattgaaataga 101  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  33291531 tagatttatgtgaaaatcacttatttatattgaaataga 33291569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 9172458 - 9172418
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaataga 101  Q
    ||||||||||| ||||| ||||||||||| |||||||||||    
T  9172458 cctagatctatgtgaaagtcacttatttagattgaaataga 9172418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 9180440 - 9180400
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaataga 101  Q
    ||||||||||| ||||| ||||||||||| |||||||||||    
T  9180440 cctagatctatgtgaaagtcacttatttagattgaaataga 9180400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 11453906 - 11453866
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaataga 101  Q
    ||||||||||| |||||| |||||||||| |||||||||||    
T  11453906 cctagatctatgtgaaaaccacttatttagattgaaataga 11453866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 25337577 - 25337482
Alignment:
Q  20 cacaccaccacactcggatgacgaaatcatgaagnnnnnnncctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatga 115  Q
    ||||||||||||||||||||||||||||| ||||       ||||||| ||| ||||||||| ||||||| |||||||| ||||||||||||||||    
T  25337577 cacaccaccacactcggatgacgaaatcacgaagaaaaaaacctagatttatgtgaaaatcatttatttagattgaaatggactataaaaagatga 25337482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 12165807 - 12165737
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcagg 132  Q
    |||| |||||| ||||||||||||||||| |||||||||| | |||||||||||| || |||||||||||||    
T  12165807 cctaaatctatgtgaaaatcacttatttagattgaaataggc-ataaaaagatgaagaggagtgatttcagg 12165737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 23947428 - 23947498
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcagg 132  Q
    ||||||||||| ||||||||||||||||| |||||||||||  | |||| ||||| |||| |||||||||||    
T  23947428 cctagatctatgtgaaaatcacttatttagattgaaataga-gagaaaacgatgaagatgggtgatttcagg 23947498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 4352116 - 4352182
Alignment:
Q  66 atctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcagg 132  Q
    |||||| ||||||||||||||||  |||||||| ||||| ||||| |||| |||| |||||||||||    
T  4352116 atctatatgaaaatcacttatttggattgaaattgactagaaaaatatgaagatgggtgatttcagg 4352182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 132
Target Start/End: Complemental strand, 12652905 - 12652836
Alignment:
Q  62 ctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcagg 132  Q
    |||||||||| ||||||||||||||||| |||||||||||  | |||||||||| || | |||||||||||    
T  12652905 ctagatctatgtgaaaatcacttatttagattgaaataga-gagaaaaagatgaagaggggtgatttcagg 12652836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 4468525 - 4468485
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaataga 101  Q
    ||||||||||| ||||||||||||||||| |||||||||||    
T  4468525 cctagatctatatgaaaatcacttatttagattgaaataga 4468485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 8196518 - 8196558
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaataga 101  Q
    ||||||||||| ||||||||||||||||| |||||||||||    
T  8196518 cctagatctatgtgaaaatcacttatttagattgaaataga 8196558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 17334739 - 17334672
Alignment:
Q  63 tagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcag 131  Q
    ||||||||| ||||||||||||||||| ||||||||| || | |||||||||| |||  ||||||||||    
T  17334739 tagatctatgtgaaaatcacttatttagattgaaataaac-agaaaaagatgaagattggtgatttcag 17334672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 8496931 - 8496861
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcagg 132  Q
    ||||||||||| ||||||||||||||||| ||||||||| |  | |||||||||| || | |||||||||||    
T  8496931 cctagatctatgtgaaaatcacttatttagattgaaata-aagagaaaaagatgaagaggggtgatttcagg 8496861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 132
Target Start/End: Complemental strand, 4088425 - 4088355
Alignment:
Q  62 ctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcagg 132  Q
    |||||||||| ||||||||||||||||| |||| ||||||    ||||| |||| |||| |||||||||||    
T  4088425 ctagatctatgtgaaaatcacttatttagattgtaatagagataaaaaaaatgaagatgggtgatttcagg 4088355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 128
Target Start/End: Original strand, 7876157 - 7876222
Alignment:
Q  62 ctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgattt 128  Q
    |||||||||| ||||||||||||||||| ||||||||| |  | |||||||||| |||| |||||||    
T  7876157 ctagatctatgtgaaaatcacttatttagattgaaata-aagagaaaaagatgaagatgggtgattt 7876222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 99
Target Start/End: Complemental strand, 25064201 - 25064163
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaata 99  Q
    ||||||||||| ||||||||||||||||| |||||||||    
T  25064201 cctagatctatgtgaaaatcacttatttagattgaaata 25064163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 99
Target Start/End: Complemental strand, 33109800 - 33109762
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaata 99  Q
    ||||||||||| ||||||||||||||||| |||||||||    
T  33109800 cctagatctatgtgaaaatcacttatttagattgaaata 33109762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 99
Target Start/End: Original strand, 7881215 - 7881252
Alignment:
Q  62 ctagatctatctgaaaatcacttatttatattgaaata 99  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  7881215 ctagatctatgtgaaaatcacttatttagattgaaata 7881252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 16419121 - 16419058
Alignment:
Q  64 agatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgattt 128  Q
    |||||||| ||||| ||||||||||| |||||||||||  | |||||||||| |||| |||||||    
T  16419121 agatctatgtgaaagtcacttatttagattgaaataga-gagaaaaagatgaagatgggtgattt 16419058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 33740689 - 33740729
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaataga 101  Q
    |||| |||||| ||||||||||||||||| |||||||||||    
T  33740689 cctaaatctatgtgaaaatcacttatttagattgaaataga 33740729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 43261928 - 43261998
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcagg 132  Q
    ||||||||||| ||||||||||||||||| |||||||||||  |||||||||||| |||| |||||||||||    
T  43261928 cctagatctatgtgaaaatcacttatttagattgaaataga-gataaaaagatgaagatgggtgatttcagg 43261998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 781358 - 781288
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcagg 132  Q
    ||||||||||||||||||||||||||||| ||||||||| |  | |||||||||| |||| |||||||||||    
T  781358 cctagatctatctgaaaatcacttatttagattgaaatata-gagaaaaagatgaagatgggtgatttcagg 781288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 26578218 - 26578148
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcagg 132  Q
    ||||||||||| ||||||||||||||||| ||||||||| |  | |||||||||| ||||||||||||||||    
T  26578218 cctagatctatgtgaaaatcacttatttagattgaaata-aagagaaaaagatgaagatgagtgatttcagg 26578148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 99
Target Start/End: Complemental strand, 27751895 - 27751857
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaata 99  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  27751895 cctagatctatgtgaaaatcacttatttatattgaaata 27751857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 20257805 - 20257845
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaataga 101  Q
    ||||||||||| ||||||||||||||||| |||||||||||    
T  20257805 cctagatctatgtgaaaatcacttatttagattgaaataga 20257845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 27266971 - 27267011
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaataga 101  Q
    ||||||||||| ||||||||||||||||| |||||||||||    
T  27266971 cctagatctatgtgaaaatcacttatttagattgaaataga 27267011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 2057911 - 2057987
Alignment:
Q  23 accaccacactcggatgacgaaatcatgaagnnnnnnncctagatctatctgaaaatcacttatttatattgaaata 99  Q
    |||||||||||  ||||| |||||||| |||       ||||||||||| ||||||||||||||||| |||||||||    
T  2057911 accaccacacttagatgatgaaatcataaagaaaaaaacctagatctatgtgaaaatcacttatttagattgaaata 2057987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 10649422 - 10649352
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcagg 132  Q
    ||||||||||| ||||||||||||||||| ||||||||| |  | |||||||||| || | |||||||||||    
T  10649422 cctagatctatgtgaaaatcacttatttagattgaaata-aagagaaaaagatgaagaggggtgatttcagg 10649352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 30371693 - 30371623
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcagg 132  Q
    ||||||||||| ||||||||||||||||| ||||||||| |  | |||||||||| || | |||||||||||    
T  30371693 cctagatctatgtgaaaatcacttatttagattgaaata-aagagaaaaagatgaagaggggtgatttcagg 30371623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 101
Target Start/End: Complemental strand, 34881677 - 34881638
Alignment:
Q  62 ctagatctatctgaaaatcacttatttatattgaaataga 101  Q
    |||||||||| ||||||||||||||||| |||||||||||    
T  34881677 ctagatctatgtgaaaatcacttatttagattgaaataga 34881638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 132
Target Start/End: Complemental strand, 28235553 - 28235484
Alignment:
Q  62 ctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcagg 132  Q
    |||||||||| ||||||||||||||||| || ||||||||  | |||||||||| || | |||||||||||    
T  28235553 ctagatctatgtgaaaatcacttatttagatcgaaataga-aagaaaaagatgaagaggggtgatttcagg 28235484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 99
Target Start/End: Complemental strand, 30298177 - 30298139
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaata 99  Q
    ||||||||||| ||||||||||||||||| |||||||||    
T  30298177 cctagatctatgtgaaaatcacttatttagattgaaata 30298139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 100
Target Start/End: Original strand, 1696979 - 1697016
Alignment:
Q  63 tagatctatctgaaaatcacttatttatattgaaatag 100  Q
    ||||||||| ||||||||||||||||| ||||||||||    
T  1696979 tagatctatgtgaaaatcacttatttagattgaaatag 1697016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 132
Target Start/End: Original strand, 7150448 - 7150516
Alignment:
Q  63 tagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcagg 132  Q
    ||||||||| ||||| ||||||||||| |||||||||||  | |||||||||| || | |||||||||||    
T  7150448 tagatctatgtgaaagtcacttatttagattgaaataga-gagaaaaagatgaagaggggtgatttcagg 7150516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 99
Target Start/End: Original strand, 35475448 - 35475485
Alignment:
Q  62 ctagatctatctgaaaatcacttatttatattgaaata 99  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  35475448 ctagatctatgtgaaaatcacttatttagattgaaata 35475485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 3166322 - 3166259
Alignment:
Q  67 tctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcag 131  Q
    ||||| |||||||  |||||||||||| ||||| |  |||||||||||| |||||||||||||||    
T  3166322 tctatgtgaaaattgcttatttatatttaaataaag-ataaaaagatgaagatgagtgatttcag 3166259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 7241751 - 7241711
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaataga 101  Q
    ||||||||||| ||||| ||||||||||| |||||||||||    
T  7241751 cctagatctatgtgaaagtcacttatttagattgaaataga 7241711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 7246927 - 7246887
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaataga 101  Q
    ||||||||||| ||||| ||||||||||| |||||||||||    
T  7246927 cctagatctatgtgaaagtcacttatttagattgaaataga 7246887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 18677577 - 18677617
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaataga 101  Q
    ||||||||||| ||||||||||||||||| ||| |||||||    
T  18677577 cctagatctatgtgaaaatcacttatttagattaaaataga 18677617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 42579849 - 42579809
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaataga 101  Q
    |||| |||||| ||||||||||||||||| |||||||||||    
T  42579849 cctaaatctatgtgaaaatcacttatttagattgaaataga 42579809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 20116549 - 20116479
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcagg 132  Q
    ||||||||||| ||||||||||||||||| ||||||||||| || |||||||||| || | |||||||||||    
T  20116549 cctagatctatgtgaaaatcacttatttagattgaaataga-tagaaaaagatgaagaagggtgatttcagg 20116479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 26583680 - 26583610
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcagg 132  Q
    ||||||| ||| ||||||||||||||||| |||||||||||  |||||||||||| || | |||||||||||    
T  26583680 cctagatatatatgaaaatcacttatttagattgaaataga-gataaaaagatgaagaggggtgatttcagg 26583610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 32684651 - 32684611
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaataga 101  Q
    ||||||||||| ||||||||||||||||| |||||||||||    
T  32684651 cctagatctatgtgaaaatcacttatttagattgaaataga 32684611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 35667342 - 35667382
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaataga 101  Q
    ||||||||||| ||||||||||||||||| |||||||||||    
T  35667342 cctagatctatgtgaaaatcacttatttagattgaaataga 35667382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 101
Target Start/End: Original strand, 1448941 - 1448980
Alignment:
Q  62 ctagatctatctgaaaatcacttatttatattgaaataga 101  Q
    |||||||||| ||||||||||||||||| |||||||||||    
T  1448941 ctagatctatgtgaaaatcacttatttagattgaaataga 1448980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 101
Target Start/End: Complemental strand, 26492330 - 26492291
Alignment:
Q  62 ctagatctatctgaaaatcacttatttatattgaaataga 101  Q
    |||||||||| ||||||||||||||||| |||||||||||    
T  26492330 ctagatctatgtgaaaatcacttatttaaattgaaataga 26492291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 128
Target Start/End: Complemental strand, 35261252 - 35261197
Alignment:
Q  73 tgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgattt 128  Q
    ||||||||||||||||  |||||||| ||||| |||||||||| |||| |||||||    
T  35261252 tgaaaatcacttatttggattgaaatggactagaaaaagatgaagatgggtgattt 35261197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 99
Target Start/End: Original strand, 2843338 - 2843376
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaata 99  Q
    ||||||||||| ||||||||||||||||| |||||||||    
T  2843338 cctagatctatgtgaaaatcacttatttagattgaaata 2843376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 99
Target Start/End: Complemental strand, 21266358 - 21266320
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaata 99  Q
    ||||||||||| ||||||||||||||||| |||||||||    
T  21266358 cctagatctatgtgaaaatcacttatttagattgaaata 21266320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 132
Target Start/End: Complemental strand, 46821979 - 46821910
Alignment:
Q  62 ctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcagg 132  Q
    |||||||||| ||||||||||||||||| ||||||||| |  | |||||||||| || | |||||||||||    
T  46821979 ctagatctatgtgaaaatcacttatttagattgaaata-aagagaaaaagatgaagaggggtgatttcagg 46821910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 97
Target Start/End: Complemental strand, 3860915 - 3860882
Alignment:
Q  64 agatctatctgaaaatcacttatttatattgaaa 97  Q
    |||||||| |||||||||||||||||||||||||    
T  3860915 agatctatgtgaaaatcacttatttatattgaaa 3860882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 17611132 - 17611099
Alignment:
Q  20 cacaccaccacactcggatgacgaaatcatgaag 53  Q
    ||||||||||||||||||||||||||||| ||||    
T  17611132 cacaccaccacactcggatgacgaaatcacgaag 17611099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 132
Target Start/End: Original strand, 45199144 - 45199212
Alignment:
Q  63 tagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcagg 132  Q
    ||||||||| ||||||||||||||||| ||| ||||| |  | |||||||||| |||| |||||||||||    
T  45199144 tagatctatatgaaaatcacttatttaaattaaaatata-gagaaaaagatgaagatgggtgatttcagg 45199212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 99
Target Start/End: Complemental strand, 46339018 - 46338981
Alignment:
Q  62 ctagatctatctgaaaatcacttatttatattgaaata 99  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  46339018 ctagatctatgtgaaaatcacttatttacattgaaata 46338981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 35496286 - 35496326
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaataga 101  Q
    ||||||||||| ||||||||||||| ||| |||||||||||    
T  35496286 cctagatctatgtgaaaatcacttaattagattgaaataga 35496326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 42311246 - 42311206
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaataga 101  Q
    ||||||||||| |||| |||||||||||| |||||||||||    
T  42311246 cctagatctatgtgaatatcacttatttagattgaaataga 42311206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 99
Target Start/End: Complemental strand, 48207866 - 48207830
Alignment:
Q  63 tagatctatctgaaaatcacttatttatattgaaata 99  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  48207866 tagatctatgtgaaaatcacttatttagattgaaata 48207830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 32680693 - 32680763
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcagg 132  Q
    ||||||||||| ||||| ||||||||||| |||||||||||  | |||||||||| ||||||||||||||||    
T  32680693 cctagatctatgtgaaagtcacttatttagattgaaataga-gagaaaaagatgaagatgagtgatttcagg 32680763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 62 - 132
Target Start/End: Original strand, 40660043 - 40660110
Alignment:
Q  62 ctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcagg 132  Q
    |||||||||| ||||||||||||||||| ||||||||||   | |||||||||| |||| |||||||||||    
T  40660043 ctagatctatgtgaaaatcacttatttagattgaaatag---agaaaaagatgaagatgtgtgatttcagg 40660110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 3270339 - 3270409
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcagg 132  Q
    ||||||||||| ||||||||||||||||| ||||||||| |  | ||||||||||  |||||||||||||||    
T  3270339 cctagatctatgtgaaaatcacttatttagattgaaata-aaaagaaaaagatgaaaatgagtgatttcagg 3270409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 6173602 - 6173532
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcagg 132  Q
    ||||||||||| ||||||||||||||||| |||||||||||  | |||||||||| || | |||||||||||    
T  6173602 cctagatctatgtgaaaatcacttatttagattgaaataga-gagaaaaagatgaagaggggtgatttcagg 6173532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 39641970 - 39642040
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcagg 132  Q
    ||||||||||| ||||||||| ||||||| |||||||||||  | |||||||||| ||| ||||||||||||    
T  39641970 cctagatctatgtgaaaatcatttatttaaattgaaataga-gagaaaaagatgaagataagtgatttcagg 39642040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 101
Target Start/End: Complemental strand, 3725148 - 3725111
Alignment:
Q  64 agatctatctgaaaatcacttatttatattgaaataga 101  Q
    |||||||| |||||||||||||||||||||||||||||    
T  3725148 agatctatgtgaaaatcacttatttatattgaaataga 3725111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 132
Target Start/End: Complemental strand, 4228100 - 4228032
Alignment:
Q  63 tagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcagg 132  Q
    ||||||||| || |||||||||||||||||||||||| |  ||||||| |||| |||| |||||||||||    
T  4228100 tagatctatgtgtaaatcacttatttatattgaaata-aagataaaaatatgaagatgtgtgatttcagg 4228032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 34598957 - 34598897
Alignment:
Q  62 ctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagt 123  Q
    |||||||||| ||||||||||||||||| |||||||||||  | |||||||||| |||||||    
T  34598957 ctagatctatgtgaaaatcacttatttagattgaaataga-gagaaaaagatgaagatgagt 34598897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 17319333 - 17319254
Alignment:
Q  20 cacaccaccacactcggatgacgaaatcatgaagnnnnnnncctagatctatctgaaaatcacttatttatattgaaataga 101  Q
    ||||||||||||||| ||||||||||||||||||       ||||||||||| ||||||| | ||||||| |||||||||||    
T  17319333 cacaccaccacactcagatgacgaaatcatgaag-aaaaaacctagatctatgtgaaaat-agttatttagattgaaataga 17319254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 27249262 - 27249332
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcagg 132  Q
    ||||||||||| ||||||||||||||||| ||||||||| |  | |||||||||| || | |||||||||||    
T  27249262 cctagatctatgtgaaaatcacttatttagattgaaata-aagagaaaaagatgaagaggggtgatttcagg 27249332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 30420647 - 30420577
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcagg 132  Q
    ||||||||||| ||||||||||||||||| ||||||||| |  | |||||||||| || | |||||||||||    
T  30420647 cctagatctatgtgaaaatcacttatttagattgaaata-aagagaaaaagatgaagaggggtgatttcagg 30420577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 101
Target Start/End: Original strand, 31581831 - 31581870
Alignment:
Q  62 ctagatctatctgaaaatcacttatttatattgaaataga 101  Q
    |||||||||| ||||||||||||||||| |||||||||||    
T  31581831 ctagatctatgtgaaaatcacttatttagattgaaataga 31581870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 132
Target Start/End: Original strand, 21570520 - 21570589
Alignment:
Q  62 ctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcagg 132  Q
    |||||||||| ||||||||||||||||| ||||||||| |  | |||||||||| || | |||||||||||    
T  21570520 ctagatctatgtgaaaatcacttatttagattgaaatata-gagaaaaagatgaagaggggtgatttcagg 21570589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 99
Target Start/End: Complemental strand, 32913212 - 32913174
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaata 99  Q
    ||||||||||| ||||||||||||||||| |||||||||    
T  32913212 cctagatctatgtgaaaatcacttatttaaattgaaata 32913174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 132
Target Start/End: Complemental strand, 36233974 - 36233905
Alignment:
Q  62 ctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcagg 132  Q
    |||||||||| ||||||||||||||||| ||||||||| |  | |||||||||| || | |||||||||||    
T  36233974 ctagatctatgtgaaaatcacttatttagattgaaata-aagagaaaaagatgaagaggggtgatttcagg 36233905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 99
Target Start/End: Complemental strand, 42949685 - 42949647
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaata 99  Q
    ||||||||||| ||||||||||||||||| |||||||||    
T  42949685 cctagatctatgtgaaaatcacttatttagattgaaata 42949647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 459344 - 459425
Alignment:
Q  20 cacaccaccacactcggatgacgaaatcatgaagnnnnnnncctagatctatctgaaaatcacttatttatattgaaataga 101  Q
    |||||||| |||||| ||||||||||||| ||||       |||| |||||| |||||||| |||||||| | |||||||||    
T  459344 cacaccacgacactcagatgacgaaatcacgaagaaaaaaacctatatctatgtgaaaatcgcttatttaaaatgaaataga 459425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 2808581 - 2808621
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaataga 101  Q
    ||||||||||| ||||||||||||||||| | |||||||||    
T  2808581 cctagatctatgtgaaaatcacttatttagactgaaataga 2808621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 9986456 - 9986496
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaataga 101  Q
    ||||||||||| ||||||||||||||||| |||||| ||||    
T  9986456 cctagatctatgtgaaaatcacttatttagattgaattaga 9986496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 22421706 - 22421666
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaataga 101  Q
    ||||||||||| ||||| ||||||||||| |||||||||||    
T  22421706 cctagatctatgtgaaagtcacttatttagattgaaataga 22421666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 26025520 - 26025560
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaataga 101  Q
    ||||||||||| |||||| |||||||||| |||||||||||    
T  26025520 cctagatctatgtgaaaaccacttatttagattgaaataga 26025560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 97
Target Start/End: Complemental strand, 27949393 - 27949357
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaa 97  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  27949393 cctagatctatgtgaaaatcacttatttagattgaaa 27949357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 38440688 - 38440758
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcagg 132  Q
    ||||||||||| ||||||||||||||||| |||||||||||  | |||||||| | || |||||||||||||    
T  38440688 cctagatctatgtgaaaatcacttatttagattgaaataga-gagaaaaagataaagaggagtgatttcagg 38440758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 128
Target Start/End: Complemental strand, 4178527 - 4178462
Alignment:
Q  62 ctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgattt 128  Q
    |||||| ||||||||||||||||||||| |||||||||||  | |||||||||| |||| |||||||    
T  4178527 ctagatttatctgaaaatcacttatttagattgaaataga-gagaaaaagatgaagatgggtgattt 4178462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 4172530 - 4172490
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaataga 101  Q
    ||||||||||| ||||||||||||||||| |||||||||||    
T  4172530 cctagatctatgtgaaaatcacttatttagattgaaataga 4172490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 25631638 - 25631678
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaataga 101  Q
    ||||||||||| ||||||||||||||||| |||||||||||    
T  25631638 cctagatctatgtgaaaatcacttatttagattgaaataga 25631678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 3850566 - 3850636
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcagg 132  Q
    ||||||||||| ||||| ||||||||||| |||||||||||  | |||||||||| || | |||||||||||    
T  3850566 cctagatctatgtgaaagtcacttatttagattgaaataga-gagaaaaagatgaagaggggtgatttcagg 3850636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 36906085 - 36906015
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcagg 132  Q
    |||| |||||| ||||||||||||||||||||||||||| |  | |||||||||| || | |||||||||||    
T  36906085 cctaaatctatgtgaaaatcacttatttatattgaaata-aagagaaaaagatgaagaagggtgatttcagg 36906015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 42719484 - 42719414
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttcagg 132  Q
    ||||||||||  ||||||||||||||||| |||||||||||  | ||||| | || ||||||||||||||||    
T  42719484 cctagatctacatgaaaatcacttatttaaattgaaataga-gagaaaaatacgaagatgagtgatttcagg 42719414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 99
Target Start/End: Complemental strand, 32607431 - 32607393
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaata 99  Q
    ||||||||||| ||||||||||||||||| |||||||||    
T  32607431 cctagatctatgtgaaaatcacttatttagattgaaata 32607393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 99
Target Start/End: Original strand, 35499312 - 35499350
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaata 99  Q
    ||||||||||| ||||||||||||||||| |||||||||    
T  35499312 cctagatctatgtgaaaatcacttatttagattgaaata 35499350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 99
Target Start/End: Original strand, 50611528 - 50611566
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaata 99  Q
    ||||||||||| ||||||||||||||||| |||||||||    
T  50611528 cctagatctatatgaaaatcacttatttagattgaaata 50611566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 130
Target Start/End: Complemental strand, 25162399 - 25162332
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatgatgatgagtgatttca 130  Q
    ||||||||||| ||||| ||||||||||| |||||||||||  | |||||||||| |||| |||||||||    
T  25162399 cctagatctatgtgaaa-tcacttatttagattgaaataga-gagaaaaagatgaagatgggtgatttca 25162332  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 101
Target Start/End: Complemental strand, 31794040 - 31794003
Alignment:
Q  64 agatctatctgaaaatcacttatttatattgaaataga 101  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  31794040 agatctatgtgaaaatcacttatttagattgaaataga 31794003  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 99
Target Start/End: Complemental strand, 14464469 - 14464433
Alignment:
Q  63 tagatctatctgaaaatcacttatttatattgaaata 99  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  14464469 tagatctatgtgaaaatcacttatttagattgaaata 14464433  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 17237766 - 17237726
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaataga 101  Q
    |||| |||||| ||||||||||||||||| |||||||||||    
T  17237766 cctaaatctatgtgaaaatcacttatttagattgaaataga 17237726  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 39917507 - 39917547
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaataga 101  Q
    ||||||||||| ||||||||||||||||| |||||| ||||    
T  39917507 cctagatctatgtgaaaatcacttatttagattgaattaga 39917547  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 46934602 - 46934566
Alignment:
Q  65 gatctatctgaaaatcacttatttatattgaaataga 101  Q
    ||||||| ||||||||||||||||| |||||||||||    
T  46934602 gatctatgtgaaaatcacttatttagattgaaataga 46934566  T

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Target: scaffold0311 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 115
Target Start/End: Complemental strand, 8686 - 8633
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaatagactataaaaagatga 115  Q
    ||||||||||| ||||||||||||||||| |||||||||||  ||||||||||||    
T  8686 cctagatctatgtgaaaatcacttatttagattgaaataga-gataaaaagatga 8633  T

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Target: scaffold0014 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 99
Target Start/End: Original strand, 201483 - 201520
Alignment:
Q  62 ctagatctatctgaaaatcacttatttatattgaaata 99  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  201483 ctagatctatgtgaaaatcacttatttagattgaaata 201520  T

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Target: scaffold0146 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 16433 - 16473
Alignment:
Q  61 cctagatctatctgaaaatcacttatttatattgaaataga 101  Q
    |||| |||||| ||||||||||||||||| |||||||||||    
T  16433 cctaaatctatgtgaaaatcacttatttagattgaaataga 16473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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