View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10594_low_1 (Length: 425)

Name: NF10594_low_1
Description: NF10594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10594_low_1
NF10594_low_1
[»] chr8 (5 HSPs)
chr8 (3-411)||(14004103-14004505)
chr8 (3-411)||(5766293-5766701)
chr8 (215-341)||(34935748-34935874)
chr8 (43-144)||(17635611-17635712)
chr8 (43-144)||(17642890-17642991)
[»] chr4 (4 HSPs)
chr4 (84-369)||(1481684-1481963)
chr4 (17-141)||(8186317-8186441)
chr4 (40-132)||(661855-661947)
chr4 (40-140)||(55907634-55907734)
[»] chr6 (4 HSPs)
chr6 (61-144)||(7132323-7132406)
chr6 (61-144)||(7135246-7135329)
chr6 (61-144)||(7138169-7138252)
chr6 (40-144)||(8913375-8913479)
[»] chr2 (1 HSPs)
chr2 (40-140)||(1036570-1036670)
[»] chr1 (2 HSPs)
chr1 (203-236)||(30827961-30827994)
chr1 (41-125)||(7555196-7555280)


Alignment Details
Target: chr8 (Bit Score: 370; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 3 - 411
Target Start/End: Original strand, 14004103 - 14004505
Alignment:
Q  3 caatgagatggacatcagtgctattaagagaattaaggttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagc 102  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14004103 caatgagatggagatcagtgctattaagagaattaaggttggaacaaataagtgaggtcaaagttgtaatgttctgagagaaagctcgcaaaccattagc 14004202  T
Q  103 aggaaggatgagttggttggaaagattgagcgatgtgagtttgaacattgggaagctagagatttgagtaagaagtgcatcgaggtcaccataatagtac 202  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14004203 aggaaggatgggttggttggaaagattgagcgatgtgagtttgaacattgggaagctagagatttgagtaagaagtgcatcgaggtcaccataatagtac 14004302  T
Q  203 gagaggtcgagggaggtgagtttggtgaacctttgtaataggccagggaggacaggtagggttggatacaagatagttagacagaatttgtgacagttgg 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14004303 gagaggtcgagggaggtgagtttggtgaacctttgtaataggccagggaggacaggtagggttggatacaagatagttagacagaatttgtgacggttgg 14004402  T
Q  303 tgacggagaggaagtgttttgaggcgacagatagagacttcaaatagcgcttacggtggtcatcatcgtcgttatttttcagcaatctgaacacacgttc 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||    
T  14004403 tgacggagaggaagtgttttgaggcgacagatagagacttcaaatag------cggtggtcatcatcgtcgttatttttcagcaatctgaacacacgttc 14004496  T
Q  403 ccatatatc 411  Q
    |||||||||    
T  14004497 ccatatatc 14004505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 3 - 411
Target Start/End: Complemental strand, 5766701 - 5766293
Alignment:
Q  3 caatgagatggacatcagtgctattaagagaattaaggttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagc 102  Q
    ||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5766701 caatgaggtggatatcagtgctattaagagaaataaggttggaacaaataagtgaggtcaaagttgtaatgttctgagagaaagctcgcaaaccattagc 5766602  T
Q  103 aggaaggatgagttggttggaaagattgagcgatgtgagtttgaacattgggaagctagagatttgagtaagaagtgcatcgaggtcaccataatagtac 202  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  5766601 aggaaggatgagttggttggaaagattgagcgatgtgagtttcaacattgggaagctagagatttgagtaagaagtgcatctaggtcaccgtaatagtac 5766502  T
Q  203 gagaggtcgagggaggtgagtttggtgaacctttgtaataggccagggaggacaggtagggttggatacaagatagttagacagaatttgtgacagttgg 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  5766501 gagaggtcgagggaggtgagtttggtgaacctttgtaataggccagggaggacaggtagggctggatacaagatagttagacagaatttgtgacggttgg 5766402  T
Q  303 tgacggagaggaagtgttttgaggcgacagatagagacttcaaatagcgcttacggtggtcatcatcgtcgttatttttcagcaatctgaacacacgttc 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5766401 tgacggagaggaagtgttttgaggcgacagatagagacttcaaataccgcttacggtggtcatcatcgtcgttatttttcagcaatctgaacacacgttc 5766302  T
Q  403 ccatatatc 411  Q
    |||||||||    
T  5766301 ccatatatc 5766293  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 215 - 341
Target Start/End: Complemental strand, 34935874 - 34935748
Alignment:
Q  215 gaggtgagtttggtgaacctttgtaataggccagggaggacaggtagggttggatacaagatagttagacagaatttgtgacagttggtgacggagagga 314  Q
    |||||||| ||||| |||||||| || |||| ||| |||  ||| |||||| |||   | ||||| ||| |||||||||||| |||||||||||||||||    
T  34935874 gaggtgaggttggtaaacctttggaagaggcgaggaagggaagggagggtttgatcagaaatagtgagagagaatttgtgacggttggtgacggagagga 34935775  T
Q  315 agtgttttgaggcgacagatagagact 341  Q
    ||||||| |||| |||||| |||||||    
T  34935774 agtgtttggaggagacagagagagact 34935748  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 43 - 144
Target Start/End: Complemental strand, 17635712 - 17635611
Alignment:
Q  43 ggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagt 142  Q
    ||||||| | || ||||||||||||||||| ||||| ||||||||||| || |||||||  |||| | ||||||||||||| |||||||| ||| |||||    
T  17635712 ggaacaagtgagagaggtcaaagttgtaatattccgggagaaagctcgtaacccattagttggaatggtgagttggttggacagattgagtgatatgagt 17635613  T
Q  143 tt 144  Q
    ||    
T  17635612 tt 17635611  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 43 - 144
Target Start/End: Complemental strand, 17642991 - 17642890
Alignment:
Q  43 ggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagt 142  Q
    ||||||| | || ||||||||||||||||| ||| | ||||||||| | || ||||| |  |||| | |||| |||||||| |||||||| |||||||||    
T  17642991 ggaacaagtgagagaggtcaaagttgtaatattctgggagaaagcttgtaacccattggtgggaatggtgagatggttggagagattgagtgatgtgagt 17642892  T
Q  143 tt 144  Q
    ||    
T  17642891 tt 17642890  T

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Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 84 - 369
Target Start/End: Original strand, 1481684 - 1481963
Alignment:
Q  84 aagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagtttgaacattgggaagctagagatttgagtaagaagtgcatc 183  Q
    |||||||||| |||||||| |||||| |||||||||| || | |||||||||||||||||| ||   |||||| |  |||||||| || ||||| |||||    
T  1481684 aagctcgcaagccattagcgggaaggttgagttggtttgagatattgagcgatgtgagtttcaa---tgggaaacaggagatttgggtgagaagcgcatc 1481780  T
Q  184 gaggtcaccataatagtacgagaggtcgagggaggtgagtttggtgaacctttgtaataggccagggaggacaggtagggttggatacaagatagttaga 283  Q
    ||||| |   || ||| | || ||||| |  |||||||| ||||||||||||||||  ||||  || |||  | |   ||||| || | ||||||| |||    
T  1481781 gaggttaaagtagtagaaggaaaggtcaaaagaggtgagattggtgaacctttgtaggaggcgtggaaggtaacg---ggttgaatgccagatagtgaga 1481877  T
Q  284 cagaatttgtgacagttggtgacggagaggaagtgttttgaggcgacagatagagacttcaaatagcgcttacggtggtcatcatc 369  Q
     ||||||||| || ||||||||||||||||||||||||||| ||||| || ||||||||||  ||||| || |||||||| |||||    
T  1481878 gagaatttgtaactgttggtgacggagaggaagtgttttgaagcgactgagagagacttcatgtagcgtttccggtggtcgtcatc 1481963  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 8186441 - 8186317
Alignment:
Q  17 tcagtgctattaagagaattaaggttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagtt 116  Q
    ||||||||||| | ||| | || |||||||||  | |||||||||||||||||||| || || |||| | ||||||| ||||| ||||||| | || |||    
T  8186441 tcagtgctattgatagattcaatgttggaacatgtgagtgaggtcaaagttgtaatatttcgggagagaactcgcaatccatttgcaggaatggtgggtt 8186342  T
Q  117 ggttggaaagattgagcgatgtgag 141  Q
     ||| || |||||||| ||||||||    
T  8186341 tgttagagagattgagtgatgtgag 8186317  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 132
Target Start/End: Original strand, 661855 - 661947
Alignment:
Q  40 gttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgag 132  Q
    |||| ||||||| || ||||| ||||||||||| |   | ||||||||||||||||||||||| |||| | ||  ||||||||| ||||||||    
T  661855 gttgtaacaaatgagagaggttaaagttgtaatatattgggagaaagctcgcaaaccattagcgggaatggtggtttggttggagagattgag 661947  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 140
Target Start/End: Complemental strand, 55907734 - 55907634
Alignment:
Q  40 gttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtg 139  Q
    |||||||||||| || ||  ||||||||||||| ||  | ||||||||||| || ||| |||| || | |||  |||||||||| ||||||||||| |||    
T  55907734 gttggaacaaatgagagaattcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaagtg 55907635  T
Q  140 a 140  Q
    |    
T  55907634 a 55907634  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 144
Target Start/End: Original strand, 7132323 - 7132406
Alignment:
Q  61 caaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagttt 144  Q
    |||||||||||||||  | |||||||||||||| ||||| ||||||| | || |||||||||| | | | ||||||||||||||    
T  7132323 caaagttgtaatgttttgggagaaagctcgcaacccatttgcaggaaaggtgtgttggttggagatactaagcgatgtgagttt 7132406  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 144
Target Start/End: Original strand, 7135246 - 7135329
Alignment:
Q  61 caaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagttt 144  Q
    |||||||||||||||  | |||||||||||||| ||||| ||||||| | || |||||||||| | | | ||||||||||||||    
T  7135246 caaagttgtaatgttttgggagaaagctcgcaacccatttgcaggaaaggtgtgttggttggagatactaagcgatgtgagttt 7135329  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 144
Target Start/End: Original strand, 7138169 - 7138252
Alignment:
Q  61 caaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagttt 144  Q
    |||||||||||||||  | |||||||||||||| ||||| ||||||| | || |||||||||| | | | ||||||||||||||    
T  7138169 caaagttgtaatgttttgggagaaagctcgcaacccatttgcaggaaaggtgtgttggttggagatactaagcgatgtgagttt 7138252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 144
Target Start/End: Complemental strand, 8913479 - 8913375
Alignment:
Q  40 gttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtg 139  Q
    |||||||||| | || ||||||||||||||||| ||   ||| ||| || |||| ||||||||||||| | |   ||||||||| | |||||||||||||    
T  8913479 gttggaacaattgagagaggtcaaagttgtaatctttttagataaaactagcaacccattagcaggaaaggtccattggttggagatattgagcgatgtg 8913380  T
Q  140 agttt 144  Q
    |||||    
T  8913379 agttt 8913375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 140
Target Start/End: Complemental strand, 1036670 - 1036570
Alignment:
Q  40 gttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtg 139  Q
    |||||||||||| || || |||||||||||||| ||  | ||||||||||| || ||| |||| || | |||  |||||||||| ||||||||||| |||    
T  1036670 gttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaagtg 1036571  T
Q  140 a 140  Q
    |    
T  1036570 a 1036570  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 236
Target Start/End: Original strand, 30827961 - 30827994
Alignment:
Q  203 gagaggtcgagggaggtgagtttggtgaaccttt 236  Q
    |||||||||||||||||||| |||||||||||||    
T  30827961 gagaggtcgagggaggtgagattggtgaaccttt 30827994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 125
Target Start/End: Original strand, 7555196 - 7555280
Alignment:
Q  41 ttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaa 125  Q
    ||||||||| | |||||||| ||||||||||| ||  | |||||||||||||| ||| | ||||| | | || ||||||||||||    
T  7555196 ttggaacaagtgagtgaggttaaagttgtaatattttgggagaaagctcgcaatccaattgcagggatggtgggttggttggaaa 7555280  T

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