View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10594_low_2 (Length: 378)
Name: NF10594_low_2
Description: NF10594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10594_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 5e-75; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 219 - 369
Target Start/End: Complemental strand, 1080379 - 1080229
Alignment:
| Q |
219 |
tgttaattgactgctctctctctgttactgttatgatggccatattactgccttgtgtggacatgcgattgagcaaaataacaagaaccaagaagaagaa |
318 |
Q |
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| T |
1080379 |
tgttaattgactgctctctctctgttactgttatgatggccacattactgccttgagtggacatgcgattgagcaaaataacaagaaccaagaagaagaa |
1080280 |
T |
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| Q |
319 |
caacaaaatgtaatttaatcttctagcctcccttgtgtgttctcttcttct |
369 |
Q |
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| T |
1080279 |
caacaaaatgtaatttaatcttctagcctcccttgtgtgttctcttcttct |
1080229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 1042857 - 1042670
Alignment:
| Q |
18 |
cattcagaatccaaaggaaaccataaaatattgaagtnnnnnnntttgagttgttaccttaacttgatttgttcccatgtcaatgaccacagctcctttc |
117 |
Q |
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| T |
1042857 |
cattcagacgccaaaagaaaccttaaaatattgaagtaaaaagtttttagttgttaccttaacttgatttgttcccatatcaatgacgacagctcctttc |
1042758 |
T |
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| Q |
118 |
tttatcgaatcaccacgaactatgttttggattccaacatctgtgaccgcaatatccgcttcagacgttatttgttcaggattctttg |
205 |
Q |
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| T |
1042757 |
tttatccaatcaccacgaactatgtttgggattccaacatctgtgaccacaatatccgcttcagacgttattcgttcaggattctttg |
1042670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 1080558 - 1080411
Alignment:
| Q |
18 |
cattcagaatccaaaggaaaccataaaatattgaagtnnnnnnntttgagttgttaccttaacttgatttgttcccatgtcaatgaccacagctcctttc |
117 |
Q |
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| T |
1080558 |
cattcagaatccaaaggaaaccttaaaatattgaagtaaaaatttttgagttgttaccttaacttgatttgttcccatgtcaatgaccacagctcctttc |
1080459 |
T |
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| Q |
118 |
tttatcgaatcaccacgaactatgttttggattccaacatctgtgacc |
165 |
Q |
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| T |
1080458 |
tttatcgaatcaccacgaactatgtatgggattccaacatctgtgacc |
1080411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 66 - 196
Target Start/End: Complemental strand, 1066939 - 1066809
Alignment:
| Q |
66 |
agttgttaccttaacttgatttgttcccatgtcaatgaccacagctcctttctttatcgaatcaccacgaactatgttttggattccaacatctgtgacc |
165 |
Q |
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| T |
1066939 |
agttgttacattaacttgatttgttcccgtgtcaatgaccacagctcctttctttatccaatcaccacgaactatgtttcggattccaatatatgtgacc |
1066840 |
T |
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| Q |
166 |
gcaatatccgcttcagacgttatttgttcag |
196 |
Q |
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| T |
1066839 |
acaatattcgcttcagacgttatttgttcag |
1066809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 219 - 326
Target Start/End: Original strand, 54036948 - 54037058
Alignment:
| Q |
219 |
tgttaattgactgctctctctctgt---tactgttatgatggccatattactgccttgtgtggacatgcgattgagcaaaataacaagaaccaagaagaa |
315 |
Q |
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|||||||||| |||||||||||| | |||||||| ||||||||| ||||||| |||||||||| | |||||||||||||||| ||||| |||||| |
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| T |
54036948 |
tgttaattgattgctctctctctctgtttactgttaggatggccatgctactgccaaatgtggacatgagtttgagcaaaataacaaaaaccatgaagaa |
54037047 |
T |
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| Q |
316 |
gaacaacaaaa |
326 |
Q |
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| T |
54037048 |
gaacaacaaaa |
54037058 |
T |
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