View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10594_low_6 (Length: 231)
Name: NF10594_low_6
Description: NF10594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10594_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 60841 - 60617
Alignment:
| Q |
1 |
tttaatttgtttgatgtctctgtgttgtggactatgaagcacatacacctgattcgacattgacatgcacatattgacatgtacacatcgacaccgttaa |
100 |
Q |
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| T |
60841 |
tttaatttgtttgatgtctctgtgtcgtggactatgaagcacatacacctgattcgacattgacatgcacatattgacatgtacacgtcgacatcgttaa |
60742 |
T |
|
| Q |
101 |
taattttaaaaaatgacaaaattgaaagtaatcacatcacatgtgtcggtgtcgaacaatgacacatgtcaatggtaaagaggttgtgggtagttgattt |
200 |
Q |
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| T |
60741 |
taattttaaaaaatgacaaaattgaaagtaatcacatcacatgtgtcggtgtcgaacaacgacacatgtcgatggtaaagaggttgtgggtagttgattt |
60642 |
T |
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| Q |
201 |
gtggcaaaataggcgtttcatctca |
225 |
Q |
| |
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| T |
60641 |
gtggcaaaataggcgtttcatctca |
60617 |
T |
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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 137
Target Start/End: Original strand, 14480138 - 14480185
Alignment:
| Q |
90 |
gacaccgttaataattttaaaaaatgacaaaattgaaagtaatcacat |
137 |
Q |
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| T |
14480138 |
gacaccgataataatttggaaaaatgacaaaattgaaagtaatcacat |
14480185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 18525353 - 18525420
Alignment:
| Q |
85 |
acatcgacaccgttaataattttaaaaaatgacaaaattgaaagtaatcacatcacatgtgtcggtgt |
152 |
Q |
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| T |
18525353 |
acatcgacacccgtagtaatttaacaaaatgacatgactgaaagtaatcacatcacatgtgtccgtgt |
18525420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 137
Target Start/End: Original strand, 18750869 - 18750923
Alignment:
| Q |
83 |
acacatcgacaccgttaataattttaaaaaatgacaaaattgaaagtaatcacat |
137 |
Q |
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| T |
18750869 |
acacatcgacaacggtaataatttaagaaaatgacataattgaatgtaatcacat |
18750923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 135
Target Start/End: Complemental strand, 861944 - 861907
Alignment:
| Q |
98 |
taataattttaaaaaatgacaaaattgaaagtaatcac |
135 |
Q |
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| T |
861944 |
taataatttgaaaaaatgacaaaattgaaagtagtcac |
861907 |
T |
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