View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10595_low_11 (Length: 240)
Name: NF10595_low_11
Description: NF10595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10595_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 49016076 - 49015860
Alignment:
| Q |
1 |
ttaaacatgactgatgactaaaccagtttgcctatggtcacgcacactgataaagaaagattcaacaacacttccaaaaaacctcaacttccagttggag |
100 |
Q |
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| T |
49016076 |
ttaaacatgactgatgactataccagttttcctatggtcaa-cacactgataaaga----ttcaacaacacttccaaaaaacctcaacttccagttggag |
49015982 |
T |
|
| Q |
101 |
actgctaattcggaaaaggacagtccatatcattgaattaacaagttttaccatgaagtgtatattcacatggggaatatgtaagctattacattcaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49015981 |
actgctaattcggaaaaggacagtccatatcattgaattaacaagtttta-catgaagtgtatattcacatggggaatatgtaagctattacattcaatt |
49015883 |
T |
|
| Q |
201 |
ttccatagaacccacaacagtat |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
49015882 |
ttccatagaacccacaacagtat |
49015860 |
T |
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