View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10595_low_12 (Length: 239)
Name: NF10595_low_12
Description: NF10595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10595_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 30304333 - 30304111
Alignment:
| Q |
7 |
ccttctcttcctttgtcttttccttcacgcaaaccatcacaattgttatctcccaagaaaggctttttcaagtggttcccttcaaccatattctcccttt |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
30304333 |
ccttctcttcctttgtcttttccttcacgcaaaccatcacaattgttatctcccaagaaaggctttttcaagtggttcccttcaaccatattcccctttt |
30304234 |
T |
|
| Q |
107 |
tcaattccttcactgattttggatggagcatagccaaaagctcaatgcttaaagatgacaaaacacctatatggaatggtgaggaaggagttgagtctca |
206 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30304233 |
tcaattccttctctgattttggatggagcatagccaaaagctcaatgcttaaagatgacaaaacacctatatggaatggtgaggaaggagttgagtctca |
30304134 |
T |
|
| Q |
207 |
gccttgtgtactatcaaacctat |
229 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
30304133 |
accttgtgtactatcaaacctat |
30304111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 30271266 - 30271044
Alignment:
| Q |
7 |
ccttctcttcctttgtcttttccttcacgcaaaccatcacaattgttatctcccaagaaaggctttttcaagtggttcccttcaaccatattctcccttt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||| |
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| T |
30271266 |
ccttctcttcctttgtcttttccttcacgcaaaccatcacaattgttatctcccaagaaaggttttttcaagtggtttccttcaaccatattctcctttt |
30271167 |
T |
|
| Q |
107 |
tcaattccttcactgattttggatggagcatagccaaaagctcaatgcttaaagatgacaaaacacctatatggaatggtgaggaaggagttgagtctca |
206 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30271166 |
tcaattccttctctgattttggatggagcatagccaaaagctcaatgcttaaagatgacaaaacacctatatggaatggtgaggaaggagttgagtctca |
30271067 |
T |
|
| Q |
207 |
gccttgtgtactatcaaacctat |
229 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
30271066 |
accttgtgtactatcaaacctat |
30271044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 30280923 - 30281145
Alignment:
| Q |
7 |
ccttctcttcctttgtcttttccttcacgcaaaccatcacaattgttatctcccaagaaaggctttttcaagtggttcccttcaaccatattctcccttt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||| |
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|
| T |
30280923 |
ccttctcttcctttgtcttttccttcacgcaaaccatcacaattgttatctcccaagaaaggttttttcaagtggtttccttcaaccatattctcctttt |
30281022 |
T |
|
| Q |
107 |
tcaattccttcactgattttggatggagcatagccaaaagctcaatgcttaaagatgacaaaacacctatatggaatggtgaggaaggagttgagtctca |
206 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30281023 |
tcaattccttctctgattttggatggagcatagccaaaagctcaatgcttaaagatgacaaaacacctatatggaatggtgaggaaggagttgagtctca |
30281122 |
T |
|
| Q |
207 |
gccttgtgtactatcaaacctat |
229 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
30281123 |
accttgtgtactatcaaacctat |
30281145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 30264372 - 30264150
Alignment:
| Q |
7 |
ccttctcttcctttgtcttttccttcacgcaaaccatcacaattgttatctcccaagaaaggctttttcaagtggttcccttcaaccatattctcccttt |
106 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
30264372 |
ccttctcttcctttgtcttttcctaaccgcaagtcatcacaattgttaactcccaagagaggctttttcaagtggttcccttcaaccatattctcccttt |
30264273 |
T |
|
| Q |
107 |
tcaattccttcactgattttggatggagcatagccaaaagctcaatgcttaaagatgacaaaacacctatatggaatggtgaggaaggagttgagtctca |
206 |
Q |
| |
|
||||||| || |||||||||||||||| ||| ||||| ||||| || ||||||| ||| ||||||||||||||||||||||||| |||| || |
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| T |
30264272 |
tcaattcaatctctgattttggatggagtatattgaaaagttcaataattgaagatgataaatcacctatatggaatggtgaggaaggttcagagtttct |
30264173 |
T |
|
| Q |
207 |
gccttgtgtactatcaaacctat |
229 |
Q |
| |
|
|||||||| |||||||||||||| |
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|
| T |
30264172 |
gccttgtgcactatcaaacctat |
30264150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 30287816 - 30288038
Alignment:
| Q |
7 |
ccttctcttcctttgtcttttccttcacgcaaaccatcacaattgttatctcccaagaaaggctttttcaagtggttcccttcaaccatattctcccttt |
106 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
30287816 |
ccttctcttcctttgtcttttcctaaccgcaagtcatcacaattgttaactcccaagagaggctttttcaagtggttcccttcaaccatattctcccttt |
30287915 |
T |
|
| Q |
107 |
tcaattccttcactgattttggatggagcatagccaaaagctcaatgcttaaagatgacaaaacacctatatggaatggtgaggaaggagttgagtctca |
206 |
Q |
| |
|
||||||| || |||||||||||||||| ||| ||||| ||||| || ||||||| ||| ||||||||||||||||||||||||| |||| || |
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| T |
30287916 |
tcaattcaatctctgattttggatggagtatattgaaaagttcaataattgaagatgataaatcacctatatggaatggtgaggaaggttcagagtttct |
30288015 |
T |
|
| Q |
207 |
gccttgtgtactatcaaacctat |
229 |
Q |
| |
|
|||||||| |||||||||||||| |
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| T |
30288016 |
gccttgtgcactatcaaacctat |
30288038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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