View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10595_low_3 (Length: 300)
Name: NF10595_low_3
Description: NF10595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10595_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 3082185 - 3082476
Alignment:
| Q |
1 |
ttacctaacgttttattttatttaccaataagtaaatgttgctagcaattggaaaaggtgtaaaactnnnnnnnnn--tcatgattatatacagatacag |
98 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
3082185 |
ttacctaaggttttattttatttaccaataagtaaatgttgctagcaattggaaaaggtgtaaaactaataaaaaaaatcatgattatatacagatacag |
3082284 |
T |
|
| Q |
99 |
gtagaaaatacagttttatgcaagatgcaacttcagcaccaatcatatccttctatgattacatcataattggtggtggcactgcagggtgtcctttggc |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
3082285 |
gtagaaaatacagttttatgcaagatgcaacttcagcaccaatcatatcctactatgattacatcatagttggtggtggcaccgcagggtgtcctttggc |
3082384 |
T |
|
| Q |
199 |
tgcaacactgtcccaaaatcatagggttttggtgcttgaacgtggtggatcaccttatgggaatccaaacataaccaatttaagtgcctatg |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3082385 |
tgcaacactgtcccaaaatcatagggttttggtgcttgaacgtggtggatcaccttatgggaatccaaacataaccaatttaagtgcctatg |
3082476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 3090541 - 3090829
Alignment:
| Q |
1 |
ttacctaacgttttattttatttaccaataagtaaatgttgctagcaattggaaaaggtgtaaaactnnnnnnnnn--tcatgattatatacagatacag |
98 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
3090541 |
ttacctagggttttattttatttaccaataaataaatgttgctagcaattggaaaaggtgtaaaactaataaaaaaaatcatgattatatacagatacag |
3090640 |
T |
|
| Q |
99 |
gtagaaaatacagttttatgcaagatgcaacttcagcaccaatcatatccttctatgattacatcataattggtggtggcactgcagggtgtcctttggc |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3090641 |
gtagaaaatacagttttatgcaagatgcaacttcagcaccaatcatatccttctatgattacatcataattggtggtggcactgcagggtgtcctttggc |
3090740 |
T |
|
| Q |
199 |
tgcaacactgtcccaaaatcatagggttttggtgcttgaacgtggtggatcaccttatgggaatccaaacataaccaatttaagtgcct |
287 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3090741 |
tgcaacactgtccaaaaatcatagggttttggtgcttgaacgtggtggatcaccttatgggaatccaaacataaccaatttaagtgcct |
3090829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 5499448 - 5499501
Alignment:
| Q |
152 |
tatgattacatcataattggtggtggcactgcagggtgtcctttggctgcaaca |
205 |
Q |
| |
|
||||||||||| ||| | || ||||| ||||||||||||||||| ||||||||| |
|
|
| T |
5499448 |
tatgattacataatagtgggaggtggaactgcagggtgtcctttagctgcaaca |
5499501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University