View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10595_low_4 (Length: 297)
Name: NF10595_low_4
Description: NF10595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10595_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 3222133 - 3221864
Alignment:
| Q |
1 |
agatattagatggaaaagagaaatggtaattagaagaatagaaagagggaagcaagtgatgagtagacatgatgtgtgtgttgataggtggaacttggga |
100 |
Q |
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| T |
3222133 |
agatattagatggaaaagagaaatggtaattagaagaatagaaagagggaagcaagtgatgagtagacatgatgtgtgtgttgataggtggaacttggga |
3222034 |
T |
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| Q |
101 |
gtttaaggtagctaggtagcaagtcaaaggagaggcaaacagacgaaaatgacatctctaaagattcccactaatggatgaatggcatatttcgaactac |
200 |
Q |
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| T |
3222033 |
gtttaagg----taggtagcaagtcaaaggagaggcaaacagacgaaaatgacatctctaaagattcccactaatggatgaatggcatatttcaaactac |
3221938 |
T |
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| Q |
201 |
ttgagattctttcttccataatattatatatagtatgtgttttgttttcagtggctgccttaacatggacgcacgtt |
277 |
Q |
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| T |
3221937 |
ttgagattcttccttcc---atattatatatagtatgtgttttgttttcagtggctgccttaacatggacgcacgtt |
3221864 |
T |
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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 188
Target Start/End: Original strand, 3186435 - 3186498
Alignment:
| Q |
125 |
caaaggagaggcaaacagacgaaaatgacatctctaaagattcccactaatggatgaatggcat |
188 |
Q |
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| T |
3186435 |
caaaggagaggcaaagagacagaaatgacttctcttgagattcccactaatggatgcatggcat |
3186498 |
T |
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