View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10595_low_7 (Length: 249)

Name: NF10595_low_7
Description: NF10595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10595_low_7
NF10595_low_7
[»] chr4 (16 HSPs)
chr4 (66-241)||(17169392-17169568)
chr4 (66-241)||(17174952-17175128)
chr4 (57-131)||(25190902-25190976)
chr4 (56-131)||(11325669-11325745)
chr4 (65-131)||(33330317-33330383)
chr4 (73-189)||(40559880-40559998)
chr4 (55-131)||(8561608-8561683)
chr4 (73-189)||(11048934-11049055)
chr4 (56-103)||(23793327-23793374)
chr4 (64-127)||(12345263-12345327)
chr4 (74-131)||(43700885-43700942)
chr4 (198-241)||(31594486-31594529)
chr4 (57-103)||(5676221-5676267)
chr4 (139-189)||(15410455-15410505)
chr4 (57-131)||(38652875-38652949)
chr4 (73-121)||(21421327-21421376)
[»] chr3 (39 HSPs)
chr3 (57-241)||(9774377-9774562)
chr3 (64-237)||(11848176-11848347)
chr3 (66-240)||(17023848-17024023)
chr3 (57-239)||(27991814-27992000)
chr3 (73-189)||(10601257-10601377)
chr3 (57-214)||(42243832-42243990)
chr3 (73-240)||(25055629-25055805)
chr3 (73-189)||(10607569-10607689)
chr3 (73-189)||(26169572-26169692)
chr3 (65-216)||(14660080-14660239)
chr3 (57-131)||(15494787-15494860)
chr3 (65-189)||(3244359-3244488)
chr3 (64-113)||(11577054-11577103)
chr3 (64-241)||(17051341-17051527)
chr3 (73-189)||(16384743-16384863)
chr3 (73-211)||(14494106-14494248)
chr3 (92-189)||(3249518-3249619)
chr3 (64-168)||(17775462-17775567)
chr3 (64-168)||(19076763-19076868)
chr3 (73-173)||(1991511-1991614)
chr3 (65-119)||(13186205-13186260)
chr3 (64-240)||(40847086-40847263)
chr3 (152-189)||(51738109-51738146)
chr3 (73-166)||(2722647-2722743)
chr3 (75-165)||(11399558-11399650)
chr3 (73-119)||(10141777-10141824)
chr3 (73-119)||(10148383-10148430)
chr3 (73-119)||(10158969-10159016)
chr3 (73-119)||(10165630-10165677)
chr3 (73-119)||(12198917-12198964)
chr3 (73-119)||(12858651-12858698)
chr3 (73-119)||(13192844-13192891)
chr3 (64-113)||(8532622-8532670)
chr3 (73-166)||(6237538-6237634)
chr3 (205-237)||(11577196-11577228)
chr3 (65-189)||(13055011-13055139)
chr3 (73-119)||(13326573-13326621)
chr3 (139-214)||(16034737-16034813)
chr3 (73-163)||(53354096-53354188)
[»] scaffold0014 (1 HSPs)
scaffold0014 (64-237)||(168804-168979)
[»] chr2 (17 HSPs)
chr2 (57-241)||(24370736-24370922)
chr2 (77-217)||(22558146-22558286)
chr2 (73-211)||(24819897-24820038)
chr2 (57-131)||(19121407-19121480)
chr2 (57-131)||(19012306-19012381)
chr2 (73-178)||(23341242-23341348)
chr2 (73-211)||(24824282-24824423)
chr2 (73-178)||(20282803-20282911)
chr2 (57-120)||(20855190-20855252)
chr2 (73-131)||(25358882-25358941)
chr2 (65-131)||(15578576-15578641)
chr2 (57-102)||(24609366-24609411)
chr2 (73-131)||(24508023-24508083)
chr2 (199-241)||(539802-539844)
chr2 (74-131)||(44998962-44999020)
chr2 (64-131)||(24365615-24365680)
chr2 (73-166)||(36684984-36685080)
[»] chr6 (40 HSPs)
chr6 (64-241)||(31964818-31964997)
chr6 (57-241)||(20221789-20221974)
chr6 (57-241)||(22115773-22115958)
chr6 (65-189)||(18449432-18449559)
chr6 (73-240)||(17744064-17744236)
chr6 (73-189)||(19074634-19074754)
chr6 (57-241)||(20225688-20225873)
chr6 (57-241)||(22119672-22119857)
chr6 (64-113)||(17793281-17793330)
chr6 (73-189)||(4188821-4188941)
chr6 (57-113)||(12659740-12659796)
chr6 (74-189)||(25949987-25950105)
chr6 (64-119)||(26822581-26822636)
chr6 (65-131)||(29094260-29094327)
chr6 (64-216)||(26139299-26139457)
chr6 (64-113)||(23346481-23346530)
chr6 (73-189)||(23492978-23493098)
chr6 (73-214)||(25964562-25964705)
chr6 (73-214)||(25969209-25969352)
chr6 (73-214)||(25973649-25973792)
chr6 (64-131)||(15172937-15173003)
chr6 (64-131)||(15470473-15470539)
chr6 (64-119)||(19696138-19696192)
chr6 (57-100)||(24392187-24392230)
chr6 (66-240)||(14894039-14894219)
chr6 (139-216)||(25508226-25508308)
chr6 (139-216)||(26018595-26018677)
chr6 (139-214)||(18233187-18233263)
chr6 (73-119)||(20164918-20164965)
chr6 (73-119)||(20171615-20171662)
chr6 (57-119)||(28733434-28733497)
chr6 (73-119)||(29597067-29597114)
chr6 (64-126)||(10916568-10916629)
chr6 (64-113)||(19612037-19612087)
chr6 (64-113)||(23509699-23509749)
chr6 (64-117)||(8604237-8604293)
chr6 (73-113)||(18976316-18976357)
chr6 (73-113)||(22164329-22164370)
chr6 (73-131)||(1126907-1126967)
chr6 (73-131)||(1176756-1176816)
[»] chr8 (17 HSPs)
chr8 (83-241)||(24220873-24221033)
chr8 (85-189)||(14877643-14877749)
chr8 (73-189)||(23694440-23694559)
chr8 (73-189)||(33633114-33633232)
chr8 (77-241)||(18959791-18959956)
chr8 (73-214)||(18162657-18162802)
chr8 (57-117)||(14155981-14156040)
chr8 (101-205)||(17515198-17515303)
chr8 (65-131)||(6280618-6280684)
chr8 (64-131)||(1989786-1989855)
chr8 (57-109)||(24342623-24342675)
chr8 (73-166)||(25397641-25397737)
chr8 (73-166)||(25733970-25734066)
chr8 (73-119)||(8328293-8328340)
chr8 (199-238)||(15636618-15636656)
chr8 (180-241)||(6280355-6280417)
chr8 (57-99)||(24059714-24059756)
[»] chr7 (35 HSPs)
chr7 (55-241)||(15523634-15523826)
chr7 (54-241)||(12348578-12348770)
chr7 (73-189)||(15706552-15706671)
chr7 (152-214)||(678891-678953)
chr7 (64-210)||(17205855-17206000)
chr7 (73-131)||(3375817-3375875)
chr7 (57-237)||(17912196-17912379)
chr7 (64-216)||(8786580-8786738)
chr7 (73-216)||(9005222-9005371)
chr7 (73-211)||(48354870-48355010)
chr7 (73-240)||(13435457-13435627)
chr7 (55-131)||(4460086-4460161)
chr7 (57-113)||(4982455-4982511)
chr7 (64-131)||(30061350-30061418)
chr7 (85-189)||(648097-648202)
chr7 (73-240)||(8779750-8779928)
chr7 (57-99)||(38878183-38878225)
chr7 (65-214)||(13734723-13734876)
chr7 (141-178)||(22245661-22245698)
chr7 (65-162)||(826959-827059)
chr7 (65-162)||(828970-829070)
chr7 (73-131)||(320374-320433)
chr7 (64-103)||(4465088-4465127)
chr7 (64-131)||(8837284-8837350)
chr7 (73-119)||(14753505-14753552)
chr7 (71-162)||(821946-822040)
chr7 (57-119)||(11483155-11483216)
chr7 (57-98)||(4255912-4255953)
chr7 (73-163)||(16330178-16330271)
chr7 (103-188)||(5398401-5398487)
chr7 (73-162)||(15463632-15463724)
chr7 (73-166)||(23204498-23204594)
chr7 (73-166)||(23510625-23510721)
chr7 (73-166)||(23516407-23516503)
chr7 (65-189)||(41723382-41723510)
[»] scaffold0088 (1 HSPs)
scaffold0088 (67-173)||(39210-39317)
[»] chr5 (13 HSPs)
chr5 (64-211)||(23028895-23029043)
chr5 (73-189)||(20968396-20968515)
chr5 (73-189)||(25576940-25577060)
chr5 (73-189)||(34780988-34781108)
chr5 (73-237)||(22171402-22171569)
chr5 (73-188)||(18482993-18483111)
chr5 (65-239)||(19890350-19890526)
chr5 (73-236)||(20915292-20915461)
chr5 (191-241)||(24166868-24166918)
chr5 (65-131)||(21733891-21733958)
chr5 (73-214)||(21999819-21999964)
chr5 (151-241)||(23114863-23114954)
chr5 (57-119)||(23114989-23115052)
[»] scaffold0251 (1 HSPs)
scaffold0251 (73-186)||(18223-18339)
[»] scaffold0175 (1 HSPs)
scaffold0175 (73-178)||(11910-12018)
[»] scaffold0125 (1 HSPs)
scaffold0125 (73-189)||(43323-43441)
[»] chr1 (30 HSPs)
chr1 (73-189)||(44538866-44538985)
chr1 (73-240)||(17987187-17987356)
chr1 (90-237)||(16384285-16384431)
chr1 (64-131)||(20860002-20860069)
chr1 (73-181)||(23289289-23289400)
chr1 (85-216)||(26133656-26133792)
chr1 (73-189)||(13251365-13251484)
chr1 (57-214)||(13798688-13798846)
chr1 (66-113)||(20498289-20498336)
chr1 (73-189)||(41228959-41229077)
chr1 (73-131)||(20449121-20449179)
chr1 (73-131)||(20534887-20534945)
chr1 (73-211)||(1869807-1869946)
chr1 (64-113)||(30817981-30818030)
chr1 (73-189)||(20405379-20405499)
chr1 (64-119)||(23299610-23299666)
chr1 (57-119)||(12059077-12059138)
chr1 (64-131)||(16069149-16069218)
chr1 (73-171)||(18379524-18379625)
chr1 (139-241)||(21240675-21240784)
chr1 (57-113)||(25404378-25404435)
chr1 (50-113)||(16147737-16147801)
chr1 (64-166)||(20412941-20413044)
chr1 (73-131)||(28208614-28208674)
chr1 (64-165)||(20150263-20150366)
chr1 (73-119)||(20400352-20400399)
chr1 (64-103)||(26194977-26195016)
chr1 (73-191)||(28205636-28205756)
chr1 (73-113)||(16354822-16354862)
chr1 (73-166)||(17717451-17717547)
[»] scaffold0018 (2 HSPs)
scaffold0018 (73-211)||(11871-12012)
scaffold0018 (73-211)||(18063-18204)
[»] scaffold0142 (1 HSPs)
scaffold0142 (77-189)||(24554-24670)
[»] scaffold0022 (1 HSPs)
scaffold0022 (73-189)||(53475-53594)
[»] scaffold0021 (2 HSPs)
scaffold0021 (73-189)||(13630-13750)
scaffold0021 (198-241)||(100813-100857)
[»] scaffold0450 (1 HSPs)
scaffold0450 (73-189)||(93-213)
[»] scaffold0081 (1 HSPs)
scaffold0081 (73-189)||(51058-51178)
[»] scaffold0197 (1 HSPs)
scaffold0197 (73-235)||(8137-8300)
[»] scaffold0006 (1 HSPs)
scaffold0006 (65-208)||(34638-34784)
[»] scaffold0360 (1 HSPs)
scaffold0360 (141-214)||(5487-5562)
[»] scaffold0213 (2 HSPs)
scaffold0213 (73-189)||(15928-16048)
scaffold0213 (64-119)||(22316-22370)
[»] scaffold0046 (1 HSPs)
scaffold0046 (73-189)||(21135-21255)
[»] scaffold0093 (1 HSPs)
scaffold0093 (139-189)||(27658-27709)
[»] scaffold0001 (4 HSPs)
scaffold0001 (57-127)||(33599-33670)
scaffold0001 (57-127)||(38906-38977)
scaffold0001 (64-131)||(81914-81982)
scaffold0001 (73-189)||(181986-182104)
[»] scaffold0123 (1 HSPs)
scaffold0123 (64-168)||(14760-14865)
[»] scaffold0031 (3 HSPs)
scaffold0031 (65-214)||(23913-24066)
scaffold0031 (139-216)||(78491-78573)
scaffold0031 (73-163)||(17259-17352)
[»] scaffold0016 (1 HSPs)
scaffold0016 (65-191)||(120311-120439)
[»] scaffold0074 (1 HSPs)
scaffold0074 (57-100)||(22032-22075)
[»] scaffold0713 (1 HSPs)
scaffold0713 (64-216)||(5999-6157)
[»] scaffold0115 (1 HSPs)
scaffold0115 (73-119)||(18327-18373)
[»] scaffold0443 (1 HSPs)
scaffold0443 (59-100)||(3795-3836)
[»] scaffold1710 (1 HSPs)
scaffold1710 (73-119)||(14-61)
[»] scaffold0096 (1 HSPs)
scaffold0096 (73-189)||(37321-37440)
[»] scaffold0855 (1 HSPs)
scaffold0855 (194-239)||(4077-4123)
[»] scaffold0847 (1 HSPs)
scaffold0847 (194-239)||(4242-4288)
[»] scaffold0841 (1 HSPs)
scaffold0841 (73-126)||(2845-2901)
[»] scaffold0064 (1 HSPs)
scaffold0064 (73-214)||(49445-49590)
[»] scaffold0003 (1 HSPs)
scaffold0003 (73-163)||(94143-94236)
[»] scaffold0375 (1 HSPs)
scaffold0375 (73-131)||(14163-14223)
[»] scaffold0264 (2 HSPs)
scaffold0264 (64-119)||(21735-21791)
scaffold0264 (201-241)||(21874-21914)


Alignment Details
Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 66 - 241
Target Start/End: Complemental strand, 17169568 - 17169392
Alignment:
Q  66 aaatccacaagtgcacggtttaccgatgtagtaataaagagtatcgtttcgacaagaagttatgaagttgat-cacttttaataatgattagatgaaagt 164  Q
    |||||| ||||||||| ||| ||||| ||||||||||||||||||||| |||||   ||||| ||| ||||| ||||||||| |||||||||||||||||    
T  17169568 aaatccgcaagtgcacagttaaccgaagtagtaataaagagtatcgttacgacagagagttaagaatttgattcacttttaacaatgattagatgaaagt 17169469  T
Q  165 ttcaaaggtaaaaagttggatttttgtttgattgaaaataataataataaaaacaccttgggattattggttcatct 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  17169468 ttcaaaggtaaaaagttggatttttgtttgattgaaaataataatattaaaaacgccttgggattattggttcatct 17169392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 66 - 241
Target Start/End: Complemental strand, 17175128 - 17174952
Alignment:
Q  66 aaatccacaagtgcacggtttaccgatgtagtaataaagagtatcgtttcgacaagaagttatgaagttgat-cacttttaataatgattagatgaaagt 164  Q
    |||||| ||||||||| ||| ||||| ||||||||||||||||||||| |||||   ||||| ||| ||||| ||||||||| |||||||||||||||||    
T  17175128 aaatccgcaagtgcacagttaaccgaagtagtaataaagagtatcgttacgacagagagttaagaatttgattcacttttaacaatgattagatgaaagt 17175029  T
Q  165 ttcaaaggtaaaaagttggatttttgtttgattgaaaataataataataaaaacaccttgggattattggttcatct 241  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  17175028 ttcaaaggtaaaaagttggaattttgtttgattgaaaataataatattaaaaacgccttgggattattggttcatct 17174952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 57 - 131
Target Start/End: Complemental strand, 25190976 - 25190902
Alignment:
Q  57 tgatgtcgtaaatccacaagtgcacggtttaccgatgtagtaataaagagtatcgtttcgacaagaagttatgaa 131  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||    
T  25190976 tgatgtagtaaatccacaagtgcacggtttaccgaagtagtaataaagagtatcgttccgacaggaagttatgaa 25190902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 56 - 131
Target Start/End: Complemental strand, 11325745 - 11325669
Alignment:
Q  56 gtgatgtcgtaaatccacaagtgcacggtttaccgatgtagtaat-aaagagtatcgtttcgacaagaagttatgaa 131  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||    
T  11325745 gtgatgtagtaaatccacaagtgcacggtttaccgatgtagtaataaaagagtatcgttccgacaggaagttatgaa 11325669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 65 - 131
Target Start/End: Original strand, 33330317 - 33330383
Alignment:
Q  65 taaatccacaagtgcacggtttaccgatgtagtaataaagagtatcgtttcgacaagaagttatgaa 131  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||    
T  33330317 taaatccgcaagtgcacggtttaccgaagtagtaataaagagtatcgtttcgacatggagttatgaa 33330383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 73 - 189
Target Start/End: Original strand, 40559880 - 40559998
Alignment:
Q  73 caagtgcacggtt-taccgatgtagtaataaagagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattagatgaaagtttcaaa 170  Q
    ||||||||||||| ||||  |||||||| ||||||||||||||||||| | ||||||||| |  | | ||||||||||||||| ||||||||||||||||    
T  40559880 caagtgcacggttctaccagtgtagtaa-aaagagtatcgtttcgacagggagttatgaattcaattaacttttaataatgatcagatgaaagtttcaaa 40559978  T
Q  171 ggtaaaaag-ttggattttt 189  Q
    ||| ||||| ||||||||||    
T  40559979 ggttaaaagtttggattttt 40559998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 55 - 131
Target Start/End: Original strand, 8561608 - 8561683
Alignment:
Q  55 agtgatgtcgtaaatccacaagtgcacggtttaccgatgtagtaataaagagtatcgtttcgacaagaagttatgaa 131  Q
    |||||||| |||||||| |||||||||||||||| |||||||||||||||| ||||||| ||||| | |||||||||    
T  8561608 agtgatgtagtaaatccgcaagtgcacggtttactgatgtagtaataaaga-tatcgttccgacatggagttatgaa 8561683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 189
Target Start/End: Complemental strand, 11049055 - 11048934
Alignment:
Q  73 caagtgcacggtt-taccgatgtagtaataaa-gagtatcgtttcgacaagaagttatgaagttgatca-cttttaataatgattagatgaaagtttcaa 169  Q
    |||||| |||||| ||||| |||||||||||| |||||||||| ||| |   ||||||||| |  |||| ||||||||||||||||||||||||||||||    
T  11049055 caagtgtacggttctaccggtgtagtaataaaagagtatcgttccgatagagagttatgaattcaatcaacttttaataatgattagatgaaagtttcaa 11048956  T
Q  170 agg-taaaaag-ttggattttt 189  Q
    ||| ||||||| ||||||||||    
T  11048955 aggttaaaaagtttggattttt 11048934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 56 - 103
Target Start/End: Original strand, 23793327 - 23793374
Alignment:
Q  56 gtgatgtcgtaaatccacaagtgcacggtttaccgatgtagtaataaa 103  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||    
T  23793327 gtgatgtcgtaaatccgcaagtgcacggtttaccgaagtagtaataaa 23793374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 127
Target Start/End: Original strand, 12345263 - 12345327
Alignment:
Q  64 gtaaatccacaagtgcacggtttaccgatgtagtaat-aaagagtatcgtttcgacaagaagtta 127  Q
    |||||||| ||||||||||||||||||| |||||||| ||||| ||||||| ||||||| |||||    
T  12345263 gtaaatccgcaagtgcacggtttaccgaagtagtaataaaagattatcgttccgacaaggagtta 12345327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 131
Target Start/End: Original strand, 43700885 - 43700942
Alignment:
Q  74 aagtgcacggtttaccgatgtagtaataaagagtatcgtttcgacaagaagttatgaa 131  Q
    |||||||||||||| ||||||||||||||| |||||||||| || | | |||||||||    
T  43700885 aagtgcacggtttatcgatgtagtaataaaaagtatcgttttgatagggagttatgaa 43700942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 241
Target Start/End: Complemental strand, 31594529 - 31594486
Alignment:
Q  198 gaaaataataataataaaaacaccttgggattattggttcatct 241  Q
    ||||||||||| ||||||||| | ||||||||||||||||||||    
T  31594529 gaaaataataaaaataaaaacgctttgggattattggttcatct 31594486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 103
Target Start/End: Complemental strand, 5676267 - 5676221
Alignment:
Q  57 tgatgtcgtaaatccacaagtgcacggtttaccgatgtagtaataaa 103  Q
    |||||| |||||| | |||||||| ||||||||||||||||||||||    
T  5676267 tgatgtagtaaattcgcaagtgcatggtttaccgatgtagtaataaa 5676221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 189
Target Start/End: Complemental strand, 15410505 - 15410455
Alignment:
Q  139 acttttaataatgattagatgaaagtttcaaaggtaaaaagttggattttt 189  Q
    ||||| ||||||||||||||| || | |||||||| |||||||||||||||    
T  15410505 actttaaataatgattagatggaaatctcaaaggttaaaagttggattttt 15410455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 131
Target Start/End: Complemental strand, 38652949 - 38652875
Alignment:
Q  57 tgatgtcgtaaatccacaagtgcacggtttaccgatgtagtaataaagagtatcgtttcgacaagaagttatgaa 131  Q
    |||||| ||||||||  ||||||||| ||||||| ||||| ||||||   ||||||| ||||| |||||||||||    
T  38652949 tgatgtagtaaatccgtaagtgcacgatttaccggtgtagcaataaaagatatcgttccgacatgaagttatgaa 38652875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 21421376 - 21421327
Alignment:
Q  73 caagtgcacggt-ttaccgatgtagtaataaagagtatcgtttcgacaag 121  Q
    |||||||||||| ||||||| ||||||  |||||||||||||||||||||    
T  21421376 caagtgcacggtcttaccgaagtagtataaaagagtatcgtttcgacaag 21421327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 57 - 241
Target Start/End: Original strand, 9774377 - 9774562
Alignment:
Q  57 tgatgtcgtaaatccacaagtgcacggtttaccgatgtagtaataaagagtatcgtttcgacaagaagttatgaagttgat-cacttttaataatgatta 155  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||| || ||||||| ||||| | ||||||||| ||||| ||||||||| ||||||||    
T  9774377 tgatgtcgtaaattcacaagtgcacggtttaccgctgtagtaataacgattatcgttccgacagggagttatgaatttgattcacttttaacaatgatta 9774476  T
Q  156 gatgaaagtttcaaaggtaaaaagttggatttttgtttgattgaaaataataataataaaaacaccttgggattattggttcatct 241  Q
     || |||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||  ||||||| |||||||||||||    
T  9774477 aattaaagtttcaaaggtaaaaagttggattttttttttatagaaaataataataataaaaacgtcttgggagtattggttcatct 9774562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 64 - 237
Target Start/End: Original strand, 11848176 - 11848347
Alignment:
Q  64 gtaaatccacaagtgcacggtttaccgatgtagtaataaagag-tatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattagatgaa 161  Q
    |||||||| ||||||||||||||||||||||||||||||| || ||| ||| ||||||| ||||||||| |  | | |||||||| |||||||||| ||     
T  11848176 gtaaatccgcaagtgcacggtttaccgatgtagtaataaaaagatattgttccgacaaggagttatgaattcaattaacttttaacaatgattagaagag 11848275  T
Q  162 agtttcaaaggtaaaaagttggatttttgtttgattgaaaataataataataaaaacaccttgggattattggttc 237  Q
    |  ||||||| |  ||||||||  |||||||| |  ||||||||||||||||||| | ||||||||||||||||||    
T  11848276 a-attcaaagtt--aaagttgggattttgtttta-agaaaataataataataaaagcgccttgggattattggttc 11848347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 66 - 240
Target Start/End: Complemental strand, 17024023 - 17023848
Alignment:
Q  66 aaatccacaagtgcacggtttaccgatgtagtaataaagagtatcgtttcgacaagaagttatgaagttgatca-cttttaataatgattagat-gaaag 163  Q
    |||||| |||||||||||||||| || ||||||| ||||||||||||| ||||| | || |||||| |  || | |||| |||||||||||||| || ||    
T  17024023 aaatccgcaagtgcacggtttactgaagtagtaa-aaagagtatcgttccgacagggagatatgaattcaattaactttaaataatgattagattgagag 17023925  T
Q  164 tttcaaaggtaaaaagtt-ggatttttgtttgattgaaaataataataataaaaacaccttgggattattggttcatc 240  Q
    ||| | |  ||||||||| ||||||||  |||| ||||||||||||||||||||||  |||||||||||| |||||||    
T  17023924 tttgagat-taaaaagtttggatttttaattgaatgaaaataataataataaaaacgtcttgggattattagttcatc 17023848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 57 - 239
Target Start/End: Original strand, 27991814 - 27992000
Alignment:
Q  57 tgatgtcgtaaatccacaagtgcacggtttaccgatgtagtaataaagag-tatcgtttcgacaagaagttatgaagttga-tcactttt--aataatga 152  Q
    ||||||||||||  | ||||||||| ||||||||| ||||||| |||||| ||||||| ||||||| |||| || | |||| | ||||||  || |||||    
T  27991814 tgatgtcgtaaactcgcaagtgcacagtttaccgaagtagtaa-aaagagttatcgttccgacaaggagttgtgtatttgatttacttttcaaacaatga 27991912  T
Q  153 ttagatgaaagtttcaaaggtaaaaagtt-ggatttttgtttgattgaaaa-taataataataaaaacaccttgggattattggttcat 239  Q
    |||| ||||||||| |||||| ||||||| ||| ||||| ||||||||||| ||||||| |||||| | ||||||||| ||||||||||    
T  27991913 ttagctgaaagttttaaaggttaaaagttgggaattttg-ttgattgaaaattaataatgataaaagcgccttgggatcattggttcat 27992000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 189
Target Start/End: Original strand, 10601257 - 10601377
Alignment:
Q  73 caagtgcacggt-ttaccgatgtagtaata-aagagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattagatgaaagtttcaa 169  Q
    |||||||||||| ||||||| ||||||| | |||||||||||| ||||| | ||||||||| |  | | |||||||||||||||||||||||||||||||    
T  10601257 caagtgcacggtcttaccgaagtagtaaaataagagtatcgttccgacagggagttatgaattcaattaacttttaataatgattagatgaaagtttcaa 10601356  T
Q  170 aggtaaaaagtt-ggattttt 189  Q
    |||| ||||||| ||||||||    
T  10601357 aggttaaaagttcggattttt 10601377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 57 - 214
Target Start/End: Original strand, 42243832 - 42243990
Alignment:
Q  57 tgatgtcgtaaatccacaagtgcacggtttaccgatgtagtaataaagagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgatta 155  Q
    |||||| |||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||   ||||||||| |  | | ||||| |||||||||||    
T  42243832 tgatgtagtaaatccgcaagtgcacggtttaccgaagtagtaa-aaagagtatcgtttcgacagtgagttatgaattcaattaactttaaataatgatta 42243930  T
Q  156 ga-tgaaagtttcaaaggtaaaaag-ttggatttttgtttgattgaaaataataataataa 214  Q
    || ||| ||||| | |  ||||||| ||||||||||  |||| ||||||||||||||||||    
T  42243931 gattgagagtttgaga-ttaaaaagtttggatttttaattgaatgaaaataataataataa 42243990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 73 - 240
Target Start/End: Complemental strand, 25055805 - 25055629
Alignment:
Q  73 caagtgcacggtt-taccgatgtagtaataaa-gagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattaga-tgaaagtttca 168  Q
    ||||||||||||| |||||| ||||||||||| |||||||||| ||||||| ||||||||| |  | | ||||| || |||||||||| ||||||||| |    
T  25055805 caagtgcacggttctaccgaagtagtaataaaagagtatcgttccgacaaggagttatgaattcaattaactttcaacaatgattagattgaaagtttaa 25055706  T
Q  169 aaggtaaaaagttggatttttgtttgatt----gaaaataataataataaaaaca-ccttgggattattggttcatc 240  Q
    |||||| ||||||| |||||||||| |||    |||||||| ||||||||||  | |||||| ||||||||| ||||    
T  25055705 aaggtagaaagttgtatttttgtttaattaaaggaaaataacaataataaaaggagccttggaattattggtccatc 25055629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 73 - 189
Target Start/End: Original strand, 10607569 - 10607689
Alignment:
Q  73 caagtgcacggt-ttaccgatgtagtaata-aagagtatcgtttcgacaagaagttatgaagttgatca-cttttaataatgattagatgaaagtttcaa 169  Q
    |||||||||||| ||||||| ||||||| | |||||||||||| |||||   ||||||||| |  || | ||||||||||||||||||||||||||||||    
T  10607569 caagtgcacggtcttaccgaagtagtaaaataagagtatcgttccgacagagagttatgaattcaattaacttttaataatgattagatgaaagtttcaa 10607668  T
Q  170 aggtaaaaag-ttggattttt 189  Q
    |||| ||||| ||||||||||    
T  10607669 aggttaaaagtttggattttt 10607689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 73 - 189
Target Start/End: Original strand, 26169572 - 26169692
Alignment:
Q  73 caagtgcacggt-ttaccgatgtagtaataaa-gagtatcgtttcgacaagaagttatgaagttgatca-cttttaataatgattagatgaaagtttcaa 169  Q
    |||||||||||| ||||||| ||||||| | | |||||||||| ||||| | ||||||||| |  || | ||||||||||||||||||||||||||||||    
T  26169572 caagtgcacggtcttaccgaagtagtaaaatatgagtatcgttccgacatggagttatgaattcaattaacttttaataatgattagatgaaagtttcaa 26169671  T
Q  170 aggtaaaaag-ttggattttt 189  Q
    |||| ||||| ||||||||||    
T  26169672 aggttaaaagtttggattttt 26169692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 65 - 216
Target Start/End: Original strand, 14660080 - 14660239
Alignment:
Q  65 taaatccacaagtgcacggtt-taccgatgtagtaataa-agagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattaga-tga 160  Q
    |||| |||||||||||||||| || ||| ||||||| || ||||||||||| ||||| | ||||||||| |  | | |||||||| |||||||||| |||    
T  14660080 taaaaccacaagtgcacggttctatcgaagtagtaaaaatagagtatcgttccgacagggagttatgaattcaattaacttttaacaatgattagattga 14660179  T
Q  161 aagtttcaaaggtaaaaagttggatttttgtttgatt----gaaaataataataataaaa 216  Q
    |||||| ||||||| ||||||| |||||||||| |||    |||||||| ||||||||||    
T  14660180 aagtttaaaaggtagaaagttgtatttttgttttattaaaagaaaataacaataataaaa 14660239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 131
Target Start/End: Complemental strand, 15494860 - 15494787
Alignment:
Q  57 tgatgtcgtaaatccacaagtgcacggtttaccgatgtagtaataaagagtatcgtttcgacaagaagttatgaa 131  Q
    |||||| ||||||||  |||||||||||||||||| ||||||||||||| ||||||||||||| | |||||||||    
T  15494860 tgatgtagtaaatccttaagtgcacggtttaccgaagtagtaataaaga-tatcgtttcgacagggagttatgaa 15494787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 65 - 189
Target Start/End: Original strand, 3244359 - 3244488
Alignment:
Q  65 taaatccacaagtgcacggtt-taccgatgtagtaataaa-gagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattagatgaa 161  Q
    |||| |||||||||||| ||| ||||  |||||||||||| |||||||||| ||||| | ||||||||| |  | | |||||||||||||||||||||||    
T  3244359 taaaaccacaagtgcacagttctaccagtgtagtaataaaagagtatcgttccgacagggagttatgaattcaattaacttttaataatgattagatgaa 3244458  T
Q  162 agtttcaaagg-taaaaag-ttggattttt 189  Q
    |||||| |||| ||||||| ||||||||||    
T  3244459 agtttcgaaggttaaaaagtttggattttt 3244488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 64 - 113
Target Start/End: Original strand, 11577054 - 11577103
Alignment:
Q  64 gtaaatccacaagtgcacggtttaccgatgtagtaataaagagtatcgtt 113  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  11577054 gtaaatccgtaagtgcacggtttaccgatgtagtaataaagagtatcgtt 11577103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 64 - 241
Target Start/End: Complemental strand, 17051527 - 17051341
Alignment:
Q  64 gtaaatccacaagtgcacggtt-taccgatgtagtaataa-agagtatcgtttcgacaagaagttatgaagttgatca-cttttaataatgattagatga 160  Q
    ||||| || ||||||||||||| |||||| ||||||| || ||||||||||| | ||| | ||||||||| |  || | |||||||||||||||||||||    
T  17051527 gtaaaaccgcaagtgcacggttctaccgaagtagtaaaaagagagtatcgttccaacagggagttatgaattcaattaacttttaataatgattagatga 17051428  T
Q  161 aagtttcaaagg-taaaaag-ttggatttttgtttgattgaaaataataataataaaaaca----ccttgggattattggttcatct 241  Q
    |||||| ||||| ||||||| ||| ||||||  ||||  |||||||| |||||||| || |     |||||||||||||||||||||    
T  17051427 aagtttgaaaggttaaaaagtttgaatttttaattgaaagaaaataacaataataataaaaagtgtcttgggattattggttcatct 17051341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 189
Target Start/End: Original strand, 16384743 - 16384863
Alignment:
Q  73 caagtgcacggt-ttaccgatgtagtaata-aagagtatcgtttcgacaagaagttatgaagttgatca-cttttaataatgattagatgaaagtttcaa 169  Q
    |||||||||||| ||||||| ||||||| | ||||||||||||  || | | ||||||||| |  || | ||||||||||||||||||||||||||||||    
T  16384743 caagtgcacggtcttaccgaagtagtaaaataagagtatcgttctgatagggagttatgaattcaattaacttttaataatgattagatgaaagtttcaa 16384842  T
Q  170 aggtaaaaag-ttggattttt 189  Q
    |||| ||||| ||||||||||    
T  16384843 aggttaaaagtttggattttt 16384863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 73 - 211
Target Start/End: Original strand, 14494106 - 14494248
Alignment:
Q  73 caagtgcacggtt-taccgatgtagtaataa-agagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattaga-tgaaagtttca 168  Q
    ||||||||||||| || ||| ||||||| || ||||||||||| ||||| | ||||||||| |  | | ||||| ||||||||||||| |||||||||      
T  14494106 caagtgcacggttctatcgaagtagtaaaaatagagtatcgttccgacagggagttatgaattcaattaactttaaataatgattagattgaaagtttag 14494205  T
Q  169 aaggtaaaaagttggatttttgtttgattgaaaataataataa 211  Q
    |||||| ||||||| |||||||||| |  ||||||||||||||    
T  14494206 aaggtagaaagttgtatttttgtttaaaagaaaataataataa 14494248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 189
Target Start/End: Original strand, 3249518 - 3249619
Alignment:
Q  92 tgtagtaataaa-gagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattagatgaaagtttcaaagg-taaaaag-ttggattt 187  Q
    |||||||||||| |||||||||| ||||| | ||||||||| |  | | ||||||||||||||||||||||||||||| |||| ||||||| ||||||||    
T  3249518 tgtagtaataaaagagtatcgttccgacagggagttatgaattcaattaacttttaataatgattagatgaaagtttcgaaggttaaaaagtttggattt 3249617  T
Q  188 tt 189  Q
    ||    
T  3249618 tt 3249619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 168
Target Start/End: Complemental strand, 17775567 - 17775462
Alignment:
Q  64 gtaaatccacaagtgcacggtttaccgatgtagtaataaagagtatcgtttcgacaagaagttatgaagttgatc-acttttaataatgattagatgaaa 162  Q
    |||||||| ||||||||||||||||||| ||| ||||||| ||||||||| ||||| | |||||| || || ||| |||| ||  |||||||||| || |    
T  17775567 gtaaatccgcaagtgcacggtttaccgaagtaataataaatagtatcgttccgacacggagttataaatttaatcaacttctatgaatgattagaagaga 17775468  T
Q  163 gtttca 168  Q
    ||||||    
T  17775467 gtttca 17775462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 168
Target Start/End: Complemental strand, 19076868 - 19076763
Alignment:
Q  64 gtaaatccacaagtgcacggtttaccgatgtagtaataaagagtatcgtttcgacaagaagttatgaagttgatc-acttttaataatgattagatgaaa 162  Q
    |||||||| ||||||||||||||||||| ||| ||||||| ||||||||| ||||| | |||||| || || ||| |||| ||  |||||||||| || |    
T  19076868 gtaaatccgcaagtgcacggtttaccgaagtaataataaatagtatcgttccgacacggagttataaatttaatcaacttctatgaatgattagaagaga 19076769  T
Q  163 gtttca 168  Q
    ||||||    
T  19076768 gtttca 19076763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 173
Target Start/End: Complemental strand, 1991614 - 1991511
Alignment:
Q  73 caagtgcacggtt-taccgatgtagtaataaa-gagtatcgtttcgacaagaagttatgaagttgatca-cttttaataatgattagatgaaagtttcaa 169  Q
    ||||||||||||| ||||| |||||||||||| ||||||||||  |||| | ||| ||||| |  || | |||||||||||||||||||||||||||| |    
T  1991614 caagtgcacggttctaccggtgtagtaataaaagagtatcgttctgacagggagtaatgaattcaattaacttttaataatgattagatgaaagtttcga 1991515  T
Q  170 aggt 173  Q
    ||||    
T  1991514 aggt 1991511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 119
Target Start/End: Original strand, 13186205 - 13186260
Alignment:
Q  65 taaatccacaagtgcacggt-ttaccgatgtagtaataaagagtatcgtttcgaca 119  Q
    |||| ||||||||||||||| ||||||| ||||||||||||||||||||| |||||    
T  13186205 taaaaccacaagtgcacggtcttaccgaagtagtaataaagagtatcgttccgaca 13186260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 240
Target Start/End: Complemental strand, 40847263 - 40847086
Alignment:
Q  64 gtaaatccacaagtgcacggtttaccgatgtagtaataaa--gagtatcgtttcgacaagaagttatgaagttgatca-cttttaataatgattagatga 160  Q
    |||||||| | |||||||| |||||||| ||||||| ||   |||||||||| |||||   ||||||||| |  || | ||||||| |||||||||||||    
T  40847263 gtaaatccgcgagtgcacgatttaccgaagtagtaaaaagatgagtatcgttccgacatcgagttatgaattcaattaacttttaagaatgattagatga 40847164  T
Q  161 aagtttcaaaggtaaaaagttggatttttgtttgattgaaaataataataataaaaacaccttgggattattggttcatc 240  Q
     ||||| | |  | |||  ||||||||||  || |  ||||||||||| ||||||| | |||||||||||||||||||||    
T  40847163 gagtttgaga--ttaaagtttggatttttaattaaaagaaaataataaaaataaaagcgccttgggattattggttcatc 40847086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 189
Target Start/End: Complemental strand, 51738146 - 51738109
Alignment:
Q  152 attagatgaaagtttcaaaggtaaaaagttggattttt 189  Q
    |||||||||||||||||||||| |||||||||||||||    
T  51738146 attagatgaaagtttcaaaggttaaaagttggattttt 51738109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 166
Target Start/End: Complemental strand, 2722743 - 2722647
Alignment:
Q  73 caagtgcacggt-ttaccgatgtagtaataaa-gagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattagatgaaagttt 166  Q
    |||||||||||| ||||||| ||||||||||| |||||||||| ||||| | ||||||||| |  | | ||||| |||||||||||||||| |||||    
T  2722743 caagtgcacggtcttaccgaagtagtaataaaagagtatcgttccgacagggagttatgaattcaattaactttaaataatgattagatgagagttt 2722647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 165
Target Start/End: Complemental strand, 11399650 - 11399558
Alignment:
Q  75 agtgcacggt-ttaccgatgtagtaataaa-gagtatcgtttcgacaagaagttatgaagttgatcacttttaataatgattagatgaaagtt 165  Q
    |||||||||| ||||||| ||||||||||| |||||||||| ||||| | ||||||||| |  || |  ||||||||||||||||||| ||||    
T  11399650 agtgcacggtcttaccgaagtagtaataaaagagtatcgttccgacagggagttatgaattcaattaactttaataatgattagatgagagtt 11399558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 119
Target Start/End: Complemental strand, 10141824 - 10141777
Alignment:
Q  73 caagtgcacggt-ttaccgatgtagtaataaagagtatcgtttcgaca 119  Q
    |||||||||||| ||||||| ||||||||||||||||||||| |||||    
T  10141824 caagtgcacggtcttaccgaagtagtaataaagagtatcgttccgaca 10141777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 119
Target Start/End: Complemental strand, 10148430 - 10148383
Alignment:
Q  73 caagtgcacggt-ttaccgatgtagtaataaagagtatcgtttcgaca 119  Q
    |||||||||||| ||||||| ||||||||||||||||||||| |||||    
T  10148430 caagtgcacggtcttaccgaagtagtaataaagagtatcgttccgaca 10148383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 119
Target Start/End: Original strand, 10158969 - 10159016
Alignment:
Q  73 caagtgcacggt-ttaccgatgtagtaataaagagtatcgtttcgaca 119  Q
    |||||||||||| ||||||| ||||||||||||||||||||| |||||    
T  10158969 caagtgcacggtcttaccgaagtagtaataaagagtatcgttccgaca 10159016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 119
Target Start/End: Original strand, 10165630 - 10165677
Alignment:
Q  73 caagtgcacggt-ttaccgatgtagtaataaagagtatcgtttcgaca 119  Q
    |||||||||||| ||||||| ||||||||||||||||||||| |||||    
T  10165630 caagtgcacggtcttaccgaagtagtaataaagagtatcgttccgaca 10165677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 119
Target Start/End: Original strand, 12198917 - 12198964
Alignment:
Q  73 caagtgcacggt-ttaccgatgtagtaataaagagtatcgtttcgaca 119  Q
    |||||||||||| ||||||| ||||||||||||||||||||| |||||    
T  12198917 caagtgcacggtcttaccgaagtagtaataaagagtatcgttccgaca 12198964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 119
Target Start/End: Complemental strand, 12858698 - 12858651
Alignment:
Q  73 caagtgcacggt-ttaccgatgtagtaataaagagtatcgtttcgaca 119  Q
    |||||||||||| ||||||| ||||||||||||||||||||| |||||    
T  12858698 caagtgcacggtcttaccgaagtagtaataaagagtatcgttccgaca 12858651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 119
Target Start/End: Original strand, 13192844 - 13192891
Alignment:
Q  73 caagtgcacggt-ttaccgatgtagtaataaagagtatcgtttcgaca 119  Q
    |||||||||||| ||||||| ||||||||||||||||||||| |||||    
T  13192844 caagtgcacggtcttaccgaagtagtaataaagagtatcgttccgaca 13192891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 113
Target Start/End: Complemental strand, 8532670 - 8532622
Alignment:
Q  64 gtaaatccacaagtgcacggtttaccgatgtagtaataaagagtatcgtt 113  Q
    |||||||  |||||||||| ||||||||||||||||| ||||||||||||    
T  8532670 gtaaatcggcaagtgcacgatttaccgatgtagtaat-aagagtatcgtt 8532622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 166
Target Start/End: Complemental strand, 6237634 - 6237538
Alignment:
Q  73 caagtgcacggtt-taccgatgtagtaataaa-gagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattagatgaaagttt 166  Q
    ||||||||| ||| ||||||||||| |||||| |||||||||| ||||| | ||||||||| |  | | ||||| |||||||||||||||| |||||    
T  6237634 caagtgcacagttctaccgatgtagcaataaaagagtatcgttccgacagggagttatgaattcaattaactttaaataatgattagatgagagttt 6237538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 11577196 - 11577228
Alignment:
Q  205 ataataataaaaacaccttgggattattggttc 237  Q
    |||||||||||| ||||||||||||||||||||    
T  11577196 ataataataaaagcaccttgggattattggttc 11577228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 189
Target Start/End: Original strand, 13055011 - 13055139
Alignment:
Q  65 taaatccacaagtgcacggt-ttaccgatgtagtaataa-agagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattaga-tga 160  Q
    |||| ||||||||||||||| ||||||| ||||||| || ||||||||||| ||||| | ||||| ||| |  | | ||||| ||||||||||||| |||    
T  13055011 taaaaccacaagtgcacggtcttaccgaagtagtaaaaatagagtatcgttccgacagggagttaggaattcaattaactttaaataatgattagactga 13055110  T
Q  161 aagtttcaaaggtaaaaagttggattttt 189  Q
    | ||||  |||||| ||||||| ||||||    
T  13055111 aggtttagaaggtagaaagttgtattttt 13055139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 119
Target Start/End: Complemental strand, 13326621 - 13326573
Alignment:
Q  73 caagtgcacggt-ttaccgatgtagtaataaa-gagtatcgtttcgaca 119  Q
    |||||||||||| ||||||| ||||||||||| ||||||||||||||||    
T  13326621 caagtgcacggtcttaccgaagtagtaataaaagagtatcgtttcgaca 13326573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 214
Target Start/End: Complemental strand, 16034813 - 16034737
Alignment:
Q  139 acttttaataatgattagat-gaaagtttcaaaggtaaaaagttggatttttgtttgattgaaaataataataataa 214  Q
    ||||| |||||||| ||||| ||||||||  |||||| ||| ||| ||||||||||||  |||||||| ||||||||    
T  16034813 actttaaataatgagtagattgaaagtttagaaggtagaaaattgtatttttgtttgaaagaaaataacaataataa 16034737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 163
Target Start/End: Original strand, 53354096 - 53354188
Alignment:
Q  73 caagtgcacggtt-taccgatgtagtaata-aagagtatcgtttcgacaagaagttatgaagttgatcacttttaataatgattagatgaaag 163  Q
    ||||||||||||| || ||| ||||||| | |||||||||||| ||||| | ||||||||| |  || ||||||||| ||||||||| |||||    
T  53354096 caagtgcacggttctatcgaagtagtaaaataagagtatcgttccgacagggagttatgaattcaataacttttaatgatgattagacgaaag 53354188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 64 - 237
Target Start/End: Complemental strand, 168979 - 168804
Alignment:
Q  64 gtaaatccacaagtgcacggtttaccgatgtagtaataaagagtatcgtttcgacaagaagttatgaagttgat-cacttttaataatgattagatgaaa 162  Q
    |||||||| || |||||||||||| ||||||||||||||||||||| ||| ||||| | ||||||||| ||||| ||||||||| |||||||||||||||    
T  168979 gtaaatccgcacgtgcacggtttatcgatgtagtaataaagagtattgttccgacagggagttatgaatttgattcacttttaacaatgattagatgaaa 168880  T
Q  163 gtttcaaaggtaaaaagtt-ggatttttgtttgattgaaaataataataataaaaacaccttgggattattggttc 237  Q
    ||||||||||||||||||| ||||||||    | | | || |||||||||||||||  ||||||||||||||||||    
T  168879 gtttcaaaggtaaaaagttgggatttttaacggttgggaattaataataataaaaatgccttgggattattggttc 168804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 57 - 241
Target Start/End: Original strand, 24370736 - 24370922
Alignment:
Q  57 tgatgtcgtaaatccacaagtgcacggtttaccgatgtagtaataaagagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgatta 155  Q
    |||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||| | | ||||||||| |||| ||| |||||| ||||||||    
T  24370736 tgatgtagtaaatccgcaagtgcacggtttaccgatgtcgtaataaagagtatcgtttcgaaagggagttatgaatttgattcaattttaacaatgatta 24370835  T
Q  156 gatgaaagtttcaaaggtaaaaagttggatttttgtttgattgaaaa-taataataataaaaacaccttgggattattggttcatct 241  Q
    ||||||| ||||||||||  ||| ||||  ||||    | ||||||| |||||||||||||||  ||||||||||||||||||||||    
T  24370836 gatgaaaatttcaaaggttgaaaattgggatttttaacggttgaaaattaataataataaaaatgccttgggattattggttcatct 24370922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 77 - 217
Target Start/End: Original strand, 22558146 - 22558286
Alignment:
Q  77 tgcacggtttaccgatgtagtaataaagagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattagatgaaagtttcaaaggtaa 175  Q
    |||| |||||||||||||||||||||||| |||||||||||||   ||||||||| |||| | ||||| || |||| |||||||| ||||| |||| |||    
T  22558146 tgcatggtttaccgatgtagtaataaaga-tatcgtttcgacagagagttatgaatttgattgactttcaacaatggttagatgagagttt-aaagttaa 22558243  T
Q  176 aaag-ttggatttttgtttgattgaaaataataataataaaaa 217  Q
    |||| |||||||||| ||||| | ||||||| |||||||||||    
T  22558244 aaagtttggatttttatttgaattaaaataacaataataaaaa 22558286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 73 - 211
Target Start/End: Original strand, 24819897 - 24820038
Alignment:
Q  73 caagtgcacggtt-taccgatgtagtaataaa-gagtatcgtttcgacaagaagttatgaagt-tgatcacttttaataatgattagatgaaagtttcaa 169  Q
    ||||||||||||| ||||| |||||||||||| |||||||||| ||||||| ||||||||| |  | | |||||||| |||||||||||||||| ||  |    
T  24819897 caagtgcacggttctaccggtgtagtaataaaagagtatcgttccgacaaggagttatgaattcagttaacttttaaaaatgattagatgaaaggttaga 24819996  T
Q  170 aggtaaaaagttggatttttgtttgattgaaaataataataa 211  Q
    ||||| ||||||| |||||||||| |  |||||||| |||||    
T  24819997 aggtagaaagttgtatttttgtttaaaagaaaataacaataa 24820038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 57 - 131
Target Start/End: Original strand, 19121407 - 19121480
Alignment:
Q  57 tgatgtcgtaaatccacaagtgcacggtttaccgatgtagtaataaagagtatcgtttcgacaagaagttatgaa 131  Q
    |||||| |||||||| |||||||||||||||| |||||||||||||||| ||||||||||||| |||||| ||||    
T  19121407 tgatgtagtaaatccgcaagtgcacggtttactgatgtagtaataaaga-tatcgtttcgacaggaagttgtgaa 19121480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 57 - 131
Target Start/End: Original strand, 19012306 - 19012381
Alignment:
Q  57 tgatgtcgtaaatccacaagtgcacggtttaccgatgtagtaat-aaagagtatcgtttcgacaagaagttatgaa 131  Q
    |||||| |||||||| |||||||||||||||||||||||||||| ||| |||||||||| |||| | |||||||||    
T  19012306 tgatgtagtaaatccgcaagtgcacggtttaccgatgtagtaataaaatagtatcgttttgacatggagttatgaa 19012381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 73 - 178
Target Start/End: Complemental strand, 23341348 - 23341242
Alignment:
Q  73 caagtgcacggtt-taccgatgtagtaataaagagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattagatgaaagtttcaaa 170  Q
    ||||||||||||| || ||| ||||||| ||||||||||||||||||| | ||||||||| |  | | |||||||| |||||||||||||||||||||||    
T  23341348 caagtgcacggttctatcgaagtagtaa-aaagagtatcgtttcgacagggagttatgaattcaattaacttttaacaatgattagatgaaagtttcaaa 23341250  T
Q  171 ggtaaaaa 178  Q
    ||| ||||    
T  23341249 ggttaaaa 23341242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 211
Target Start/End: Original strand, 24824282 - 24824423
Alignment:
Q  73 caagtgcacggtt-taccgatgtagtaataaa-gagtatcgtttcgacaagaagttatgaagtt-gatcacttttaataatgattagatgaaagtttcaa 169  Q
    ||||||||||||| ||||| ||||| |||||| |||||||||| ||||| | ||||||||| |  | | |||||||| |||||||||||||||| ||  |    
T  24824282 caagtgcacggttctaccggtgtaggaataaaagagtatcgttccgacagggagttatgaattcagttaacttttaaaaatgattagatgaaaggttaga 24824381  T
Q  170 aggtaaaaagttggatttttgtttgattgaaaataataataa 211  Q
    ||||| ||||||| |||||||||| |  |||||||| |||||    
T  24824382 aggtagaaagttgtatttttgtttaaaagaaaataacaataa 24824423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 178
Target Start/End: Complemental strand, 20282911 - 20282803
Alignment:
Q  73 caagtgcacggttt-accgatgtagtaataaa-gagtatcgtttcgacaagaagttatgaagttgatca-cttttaataatgattagatgaaagtttcaa 169  Q
    |||||||||||||| |||| | |||||||||| |||||||||| ||||| | ||||||||| |  |||| |||||||||||||||||||||| ||||| |    
T  20282911 caagtgcacggttttaccggtatagtaataaaagagtatcgttccgacagggagttatgaattcaatcaacttttaataatgattagatgaaggtttcga 20282812  T
Q  170 aggtaaaaa 178  Q
    |||| ||||    
T  20282811 aggttaaaa 20282803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 57 - 120
Target Start/End: Original strand, 20855190 - 20855252
Alignment:
Q  57 tgatgtcgtaaatccacaagtgcacggtttaccgatgtagtaataaagagtatcgtttcgacaa 120  Q
    |||||| |||||||  ||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  20855190 tgatgtagtaaatctgcaagtgcacggtttaccgatgtagtaataaaga-tatcgttacgacaa 20855252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 131
Target Start/End: Complemental strand, 25358941 - 25358882
Alignment:
Q  73 caagtgcacggt-ttaccgatgtagtaataaagagtatcgtttcgacaagaagttatgaa 131  Q
    |||||||||||| ||||||| ||||||| ||||||||||||| ||||||| |||||||||    
T  25358941 caagtgcacggtcttaccgaagtagtaaaaaagagtatcgttccgacaaggagttatgaa 25358882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 65 - 131
Target Start/End: Complemental strand, 15578641 - 15578576
Alignment:
Q  65 taaatccacaagtgcacggtttaccgatgtagtaataaagagtatcgtttcgacaagaagttatgaa 131  Q
    ||||||| |||||| |||||||||||| |||||||| |||||||||||| ||||| | |||||||||    
T  15578641 taaatccgcaagtgtacggtttaccgaagtagtaat-aagagtatcgttccgacagggagttatgaa 15578576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 24609366 - 24609411
Alignment:
Q  57 tgatgtcgtaaatccacaagtgcacggtttaccgatgtagtaataa 102  Q
    |||||| |||||||| |||||||||||||||||| |||||||||||    
T  24609366 tgatgtagtaaatccgcaagtgcacggtttaccggtgtagtaataa 24609411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 131
Target Start/End: Complemental strand, 24508083 - 24508023
Alignment:
Q  73 caagtgcacggtt-taccgatgtagtaataa-agagtatcgtttcgacaagaagttatgaa 131  Q
    ||||||||||||| |||||||||||||| || ||||||||||||||||| | |||||||||    
T  24508083 caagtgcacggttctaccgatgtagtaaaaatagagtatcgtttcgacatggagttatgaa 24508023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 241
Target Start/End: Complemental strand, 539844 - 539802
Alignment:
Q  199 aaaataataataataaaaacaccttgggattattggttcatct 241  Q
    |||||||||| ||||||| | ||||||||||||||||||||||    
T  539844 aaaataataaaaataaaagcgccttgggattattggttcatct 539802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 131
Target Start/End: Complemental strand, 44999020 - 44998962
Alignment:
Q  74 aagtgcacggtttaccgatgtagtaataa-agagtatcgtttcgacaagaagttatgaa 131  Q
    ||||| |||||||||||| |||||||||| ||||||||||| ||||| | |||||||||    
T  44999020 aagtgtacggtttaccgaagtagtaataatagagtatcgttccgacagggagttatgaa 44998962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 24365615 - 24365680
Alignment:
Q  64 gtaaatccacaagtgcacggtttaccgatgtagtaataaagagtatcgtttcgacaagaagttatgaa 131  Q
    ||||| || |||||||| | |||||||| |||||||  |||||||||||| ||||| |||||||||||    
T  24365615 gtaaaaccgcaagtgcatgttttaccgaagtagtaa--aagagtatcgttccgacaggaagttatgaa 24365680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 166
Target Start/End: Complemental strand, 36685080 - 36684984
Alignment:
Q  73 caagtgcacggtt-taccgatgtagtaataa-agagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattagatgaaagttt 166  Q
    ||||||||||||| |||||| ||||||| || ||||||||||| ||||| | ||||||||| |  | | ||||| |||||||||||||||| |||||    
T  36685080 caagtgcacggttctaccgaagtagtaaaaagagagtatcgttccgacagggagttatgaattcaattaactttaaataatgattagatgagagttt 36684984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 40)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 64 - 241
Target Start/End: Original strand, 31964818 - 31964997
Alignment:
Q  64 gtaaatccacaagtgcacggtttaccgatgtagtaataaagagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattagatgaaa 162  Q
    |||||||| |||||||| |||||||||| |||||||||||||||||| || || |  | ||||||||| |||| |||||||||| |||||||||||||||    
T  31964818 gtaaatccgcaagtgcaaggtttaccgaagtagtaataaagagtatcattccgtctggtagttatgaatttgactcacttttaacaatgattagatgaaa 31964917  T
Q  163 gtttcaaaggtaaaaagttggatttttgtttgattgaaaa-taataataataaaaacaccttgggattattggttcatct 241  Q
    |||||||||||  ||||||||  ||||    | ||||||| || ||||||||||||| ||||||||||||||||||||||    
T  31964918 gtttcaaaggttgaaagttgggatttttaacggttgaaaattagtaataataaaaacgccttgggattattggttcatct 31964997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 57 - 241
Target Start/End: Complemental strand, 20221974 - 20221789
Alignment:
Q  57 tgatgtcgtaaatccacaagtgcacggtttaccgatgtagtaataaagag-tatcgtttcgacaagaagttatgaagttga-tcact-tttaataatgat 153  Q
    ||||||||||||| | |||||| |||||||||||| ||||||||||| || ||| ||||||||| ||||||||||| |||| ||||| || || ||||||    
T  20221974 tgatgtcgtaaattcgcaagtgaacggtttaccgaagtagtaataaaaagatattgtttcgacaggaagttatgaatttgattcactcttaaacaatgat 20221875  T
Q  154 taga-tgaaagtttcaaaggtaaaaagttggatttttgtttgattgaaaataataataataaaaacaccttgggattattggttcatct 241  Q
    |||| ||||| ||| |||| || ||||||| |||||  ||  |||| ||| || |||||||||||| |||||||||||||| |||||||    
T  20221874 tagattgaaattttaaaagttagaaagttgtatttt--ttgtattg-aaagaacaataataaaaacgccttgggattattgattcatct 20221789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 57 - 241
Target Start/End: Complemental strand, 22115958 - 22115773
Alignment:
Q  57 tgatgtcgtaaatccacaagtgcacggtttaccgatgtagtaataaagag-tatcgtttcgacaagaagttatgaagttga-tcact-tttaataatgat 153  Q
    ||||||||||||| | |||||| |||||||||||| ||||||||||| || ||| ||||||||| ||||||||||| |||| ||||| || || ||||||    
T  22115958 tgatgtcgtaaattcgcaagtgaacggtttaccgaagtagtaataaaaagatattgtttcgacaggaagttatgaatttgattcactcttaaacaatgat 22115859  T
Q  154 taga-tgaaagtttcaaaggtaaaaagttggatttttgtttgattgaaaataataataataaaaacaccttgggattattggttcatct 241  Q
    |||| ||||| ||| |||| || ||||||| |||||  ||  |||| ||| || |||||||||||| |||||||||||||| |||||||    
T  22115858 tagattgaaattttaaaagttagaaagttgtatttt--ttgtattg-aaagaacaataataaaaacgccttgggattattgattcatct 22115773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 65 - 189
Target Start/End: Complemental strand, 18449559 - 18449432
Alignment:
Q  65 taaatccacaagtgcacggtt-taccgatgtagtaata-aagagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattagatgaa 161  Q
    |||| |||||||||||||||| || ||| ||||||| | |||||||| ||| ||||| | ||||||||| |  | | |||||||||||||||||||||||    
T  18449559 taaaaccacaagtgcacggttctatcgaagtagtaaaataagagtattgttccgacagggagttatgaattcaattaacttttaataatgattagatgaa 18449460  T
Q  162 agtttcaaaggtaaaaagttggattttt 189  Q
     ||||||||||| |||||||||||||||    
T  18449459 ggtttcaaaggttaaaagttggattttt 18449432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 73 - 240
Target Start/End: Complemental strand, 17744236 - 17744064
Alignment:
Q  73 caagtgcacggtttaccgatgtagtaat-aaagagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattagatgaaagtttcaaa 170  Q
    |||||||||| | ||||| ||||||||| ||||||||||||| ||| | | ||||||||| |  | | |||||||||||||||||||||||| |||||||    
T  17744236 caagtgcacgttctaccggtgtagtaataaaagagtatcgttccgatagggagttatgaattcaattaacttttaataatgattagatgaaaatttcaaa 17744137  T
Q  171 gg-taaaaag-ttggatttttgtttgattgaaaataat-aataataaaaacaccttgggattattggttcatc 240  Q
    || ||||||| ||||||||||  || |  ||||||||| || || | |||  |||||||||||||||||||||    
T  17744136 ggttaaaaagtttggatttttaattaaaagaaaataataaaaaagataaaagccttgggattattggttcatc 17744064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 73 - 189
Target Start/End: Original strand, 19074634 - 19074754
Alignment:
Q  73 caagtgcacggt-ttaccgatgtagtaataaa-gagtatcgtttcgacaagaagttatgaagttgatca-cttttaataatgattagatgaaagtttcaa 169  Q
    |||||||||||| ||||||| ||||||| | | |||||||||| ||||| | ||||||||| |  || | ||||||||||||||||||||||||||||||    
T  19074634 caagtgcacggtcttaccgaagtagtaaaatatgagtatcgttccgacagggagttatgaattcaattaacttttaataatgattagatgaaagtttcaa 19074733  T
Q  170 aggtaaaaag-ttggattttt 189  Q
    |||| ||||| ||||||||||    
T  19074734 aggttaaaagtttggattttt 19074754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 241
Target Start/End: Complemental strand, 20225873 - 20225688
Alignment:
Q  57 tgatgtcgtaaatccacaagtgcacggtttaccgatgtagtaat-aaagagtatcgtttcgacaagaagttatgaagttga-tcact-tttaataatgat 153  Q
    ||||||||||||| ||||| ||||||||||||||| |||||||| ||||  ||| |||||| ||   ||| ||||| |||| |||||  | || ||||||    
T  20225873 tgatgtcgtaaattcacaaatgcacggtttaccgaagtagtaataaaaggatattgtttcggcagagagtaatgaatttgattcactcataaacaatgat 20225774  T
Q  154 taga-tgaaagtttcaaaggtaaaaagttggatttttgtttgattgaaaataataataataaaaacaccttgggattattggttcatct 241  Q
    |||| ||||||||| | || |||||||||| ||||   |||| ||  ||| || ||||||||||||| |||||||||||||||||||||    
T  20225773 tagattgaaagtttaacagttaaaaagttgtattt---tttgttttgaaagaaaaataataaaaacatcttgggattattggttcatct 20225688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 241
Target Start/End: Complemental strand, 22119857 - 22119672
Alignment:
Q  57 tgatgtcgtaaatccacaagtgcacggtttaccgatgtagtaat-aaagagtatcgtttcgacaagaagttatgaagttga-tcact-tttaataatgat 153  Q
    ||||||||||||| ||||| ||||||||||||||| |||||||| ||||  ||| |||||| ||   ||| ||||| |||| |||||  | || ||||||    
T  22119857 tgatgtcgtaaattcacaaatgcacggtttaccgaagtagtaataaaaggatattgtttcggcagagagtaatgaatttgattcactcataaacaatgat 22119758  T
Q  154 taga-tgaaagtttcaaaggtaaaaagttggatttttgtttgattgaaaataataataataaaaacaccttgggattattggttcatct 241  Q
    |||| ||||||||| | || |||||||||| ||||   |||| ||  ||| || ||||||||||||| |||||||||||||||||||||    
T  22119757 tagattgaaagtttaacagttaaaaagttgtattt---tttgttttgaaagaaaaataataaaaacatcttgggattattggttcatct 22119672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 64 - 113
Target Start/End: Original strand, 17793281 - 17793330
Alignment:
Q  64 gtaaatccacaagtgcacggtttaccgatgtagtaataaagagtatcgtt 113  Q
    ||||||||||||||||||||||||| || |||||||||||||||||||||    
T  17793281 gtaaatccacaagtgcacggtttacagaagtagtaataaagagtatcgtt 17793330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 189
Target Start/End: Complemental strand, 4188941 - 4188821
Alignment:
Q  73 caagtgcacggt-ttaccgatgtagtaataaa-gagtatcgtttcgacaagaagttatgaagttgatca-cttttaataatgattagatgaaagtttcaa 169  Q
    |||||||||||| |||||||  |||||| | | |||||||||| ||||| | ||||||||| |  || | ||||||||||||||||||||||||||||||    
T  4188941 caagtgcacggtcttaccgaaatagtaaaatatgagtatcgttccgacagggagttatgaattcaattaacttttaataatgattagatgaaagtttcaa 4188842  T
Q  170 aggtaaaaag-ttggattttt 189  Q
    |||| ||||| ||||||||||    
T  4188841 aggttaaaagtttggattttt 4188821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 12659740 - 12659796
Alignment:
Q  57 tgatgtcgtaaatccacaagtgcacggtttaccgatgtagtaataaagagtatcgtt 113  Q
    |||||| |||| ||| |||||||||||| ||||||||||||||||||||||||||||    
T  12659740 tgatgtagtaagtccgcaagtgcacggtctaccgatgtagtaataaagagtatcgtt 12659796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 189
Target Start/End: Complemental strand, 25950105 - 25949987
Alignment:
Q  74 aagtgcacggtt-taccgatgtagtaataaagagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattagatgaaagtttcaaa- 170  Q
    |||||||| ||| |||||| ||||||| ||||||||||||||||||| | ||||||||| |  | | |||||||||| |||||||||||||||||||||     
T  25950105 aagtgcacagttctaccgaagtagtaa-aaagagtatcgtttcgacatggagttatgaattcaattaacttttaatactgattagatgaaagtttcaaac 25950007  T
Q  171 ggtaaaaag-ttggattttt 189  Q
    | ||||||| ||||||||||    
T  25950006 gttaaaaagtttggattttt 25949987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 26822636 - 26822581
Alignment:
Q  64 gtaaatccacaagtgcacggtttaccgatgtagtaataaagagtatcgtttcgaca 119  Q
    |||||||| ||||||||| |||||||| |||||||||||||||||||||| |||||    
T  26822636 gtaaatccgcaagtgcacagtttaccggtgtagtaataaagagtatcgttccgaca 26822581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 65 - 131
Target Start/End: Complemental strand, 29094327 - 29094260
Alignment:
Q  65 taaatccacaagtgcacggtttaccgatgtagtaat-aaagagtatcgtttcgacaagaagttatgaa 131  Q
    ||||||| |||||||||| ||||||||||||||||| ||||||||||||| ||||| | |||||||||    
T  29094327 taaatccgcaagtgcacgatttaccgatgtagtaataaaagagtatcgttccgacagggagttatgaa 29094260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 216
Target Start/End: Complemental strand, 26139457 - 26139299
Alignment:
Q  64 gtaaatccacaagtgcacggtt-taccgatgtagtaataaagagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattaga-tga 160  Q
    ||||| || ||||||||||||| || ||| ||| ||| ||||||||||||| ||||| | ||||||||| |  | | |||||||| |||||||||| |||    
T  26139457 gtaaaaccgcaagtgcacggttctatcgaagtaataa-aaagagtatcgttccgacagggagttatgaattcaattaacttttaacaatgattagattga 26139359  T
Q  161 aagtttcaaaggtaaaaagttggatttttgtttgatt----gaaaataataataataaaa 216  Q
    ||||||  |||||| ||||||| |||||||||| |||    |||||||||||||||||||    
T  26139358 aagtttagaaggtagaaagttgtatttttgtttaattaaaagaaaataataataataaaa 26139299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 113
Target Start/End: Original strand, 23346481 - 23346530
Alignment:
Q  64 gtaaatccacaagtgcacggtttaccgatgtagtaataaagagtatcgtt 113  Q
    |||||| | ||||||||||||||||||||||||||||||||||| |||||    
T  23346481 gtaaattcgcaagtgcacggtttaccgatgtagtaataaagagtgtcgtt 23346530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 189
Target Start/End: Complemental strand, 23493098 - 23492978
Alignment:
Q  73 caagtgcacggt-ttaccgatgtagtaataaa-gagtatcgtttcgacaagaagttatgaagttgatca-cttttaataatgattagatgaaagtttcaa 169  Q
    |||||||||||| ||| ||| ||||||| | | |||||||||| ||||| | ||||||||| |  || | ||||||| ||||||||||||||||||||||    
T  23493098 caagtgcacggtcttatcgaagtagtaaaatatgagtatcgttccgacagggagttatgaattcaattaacttttaaaaatgattagatgaaagtttcaa 23492999  T
Q  170 aggtaaaaag-ttggattttt 189  Q
    |||| ||||| ||||||||||    
T  23492998 aggttaaaagtttggattttt 23492978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 214
Target Start/End: Complemental strand, 25964705 - 25964562
Alignment:
Q  73 caagtgcacggtt-taccgatgtagtaataaagagtatcgtttcgacaagaagttatgaagttgatcacttttaataatgattagatgaaagtttc-aaa 170  Q
    ||||||| ||||| |||||| ||||||| ||||||||||||| ||||| | ||||||||| |  || |  ||| |||||||||||||||||||||| |||    
T  25964705 caagtgcgcggttctaccgaagtagtaa-aaagagtatcgttccgacagggagttatgaattcaattaacttttataatgattagatgaaagtttcaaaa 25964607  T
Q  171 ggtaaaaag-ttggatttttgtttgattgaaaataataataataa 214  Q
    | ||||||| ||||||||||  ||||  |||||||  ||||||||    
T  25964606 gttaaaaagtttggatttttaattgaaagaaaataccaataataa 25964562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 214
Target Start/End: Complemental strand, 25969352 - 25969209
Alignment:
Q  73 caagtgcacggtt-taccgatgtagtaataaagagtatcgtttcgacaagaagttatgaagttgatcacttttaataatgattagatgaaagtttc-aaa 170  Q
    ||||||| ||||| |||||| ||||||| ||||||||||||| ||||| | ||||||||| |  || |  ||| |||||||||||||||||||||| |||    
T  25969352 caagtgcgcggttctaccgaagtagtaa-aaagagtatcgttccgacagggagttatgaattcaattaacttttataatgattagatgaaagtttcaaaa 25969254  T
Q  171 ggtaaaaag-ttggatttttgtttgattgaaaataataataataa 214  Q
    | ||||||| ||||||||||  ||||  |||||||  ||||||||    
T  25969253 gttaaaaagtttggatttttaattgaaagaaaataccaataataa 25969209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 214
Target Start/End: Complemental strand, 25973792 - 25973649
Alignment:
Q  73 caagtgcacggtt-taccgatgtagtaataaagagtatcgtttcgacaagaagttatgaagttgatcacttttaataatgattagatgaaagtttc-aaa 170  Q
    ||||||| ||||| |||||| ||||||| ||||||||||||| ||||| | ||||||||| |  || |  ||| |||||||||||||||||||||| |||    
T  25973792 caagtgcgcggttctaccgaagtagtaa-aaagagtatcgttccgacagggagttatgaattcaattaacttttataatgattagatgaaagtttcaaaa 25973694  T
Q  171 ggtaaaaag-ttggatttttgtttgattgaaaataataataataa 214  Q
    | ||||||| ||||||||||  ||||  |||||||  ||||||||    
T  25973693 gttaaaaagtttggatttttaattgaaagaaaataccaataataa 25973649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 15173003 - 15172937
Alignment:
Q  64 gtaaatccacaagtgcacggtttaccgatgtagtaataaagagtatcgtttcgacaagaagttatgaa 131  Q
    |||||||| ||||||||| ||||||||| ||||||||||||| |||| || ||||||| |||||||||    
T  15173003 gtaaatccgcaagtgcacagtttaccgaagtagtaataaaga-tatcattccgacaaggagttatgaa 15172937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 15470473 - 15470539
Alignment:
Q  64 gtaaatccacaagtgcacggtttaccgatgtagtaataaagagtatcgtttcgacaagaagttatgaa 131  Q
    |||||||| ||||||||| ||||||||| ||||||||||||| |||| || ||||||| |||||||||    
T  15470473 gtaaatccgcaagtgcacagtttaccgaagtagtaataaaga-tatcattccgacaaggagttatgaa 15470539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 19696192 - 19696138
Alignment:
Q  64 gtaaatccacaagtgcacggtttaccgatgtagtaataaagagtatcgtttcgaca 119  Q
    |||||||| ||||||||| ||||||||| ||||||||||||||||||||| |||||    
T  19696192 gtaaatccgcaagtgcacagtttaccga-gtagtaataaagagtatcgttccgaca 19696138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 100
Target Start/End: Original strand, 24392187 - 24392230
Alignment:
Q  57 tgatgtcgtaaatccacaagtgcacggtttaccgatgtagtaat 100  Q
    |||||| |||||||| ||||||||||||||||||||||||||||    
T  24392187 tgatgtagtaaatccgcaagtgcacggtttaccgatgtagtaat 24392230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 240
Target Start/End: Complemental strand, 14894219 - 14894039
Alignment:
Q  66 aaatccacaagtgcacggttt-accgatgtagtaataaagagtatcgtttcgacaagaagttatgaagttgatca-cttttaataatgattagatgaaag 163  Q
    |||||| |||| ||||||||| ||||| |||| || ||||||||| ||||||||  | ||||||||| |  || | |||| |||||||||||||||||||    
T  14894219 aaatccgcaagcgcacggttttaccgaagtagcaa-aaagagtattgtttcgactgggagttatgaattcaattaactttaaataatgattagatgaaag 14894121  T
Q  164 tttcaaaggtaaaaag-ttggatttttgtttgattgaaaataataataata-----aaaacaccttgggattattggttcatc 240  Q
    ||| | |  ||||||| |||||||||   |||| |||||||||||||||||     ||| | |||||||||||||||||||||    
T  14894120 tttgaga-ttaaaaagtttggattttcaattgaatgaaaataataataataataataaagcgccttgggattattggttcatc 14894039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 216
Target Start/End: Complemental strand, 25508308 - 25508226
Alignment:
Q  139 acttttaataatgattaga-tgaaagtttcaaaggtaaaaagttggatttttgtttgatt----gaaaataataataataaaa 216  Q
    |||||||| |||||||||| ||||||||| ||||||| ||||||| |||||||||| |||    |||||||| ||||||||||    
T  25508308 acttttaacaatgattagattgaaagtttaaaaggtagaaagttgtatttttgtttcattaaaagaaaataacaataataaaa 25508226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 216
Target Start/End: Complemental strand, 26018677 - 26018595
Alignment:
Q  139 acttttaataatgattagat-gaaagtttcaaaggtaaaaagttggatttttgtttgatt----gaaaataataataataaaa 216  Q
    |||||||| ||||||||||| ||||||||  |||||||||||||| |||||||||| |||    |||||||| ||||||||||    
T  26018677 acttttaacaatgattagattgaaagtttagaaggtaaaaagttgtatttttgtttaattaaaagaaaataacaataataaaa 26018595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 214
Target Start/End: Original strand, 18233187 - 18233263
Alignment:
Q  139 acttttaataatgattaga-tgaaagtttcaaaggtaaaaagttggatttttgtttgattgaaaataataataataa 214  Q
    ||||| ||||||||||||| |||||||||  |||||| ||||||| |||||||||| |  |||||||| ||||||||    
T  18233187 actttaaataatgattagattgaaagtttagaaggtagaaagttgtatttttgtttaaaagaaaataacaataataa 18233263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 119
Target Start/End: Complemental strand, 20164965 - 20164918
Alignment:
Q  73 caagtgcacggt-ttaccgatgtagtaataaagagtatcgtttcgaca 119  Q
    |||||||||||| ||||||| ||||||||||||||||||||| |||||    
T  20164965 caagtgcacggtcttaccgaagtagtaataaagagtatcgttccgaca 20164918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 119
Target Start/End: Complemental strand, 20171662 - 20171615
Alignment:
Q  73 caagtgcacggt-ttaccgatgtagtaataaagagtatcgtttcgaca 119  Q
    |||||||||||| ||||||| ||||||||||||||||||||| |||||    
T  20171662 caagtgcacggtcttaccgaagtagtaataaagagtatcgttccgaca 20171615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 119
Target Start/End: Original strand, 28733434 - 28733497
Alignment:
Q  57 tgatgtcgtaaatccacaagtgcacggtttaccgatgtagtaataa-agagtatcgtttcgaca 119  Q
    |||||| |||||||| ||||||| ||||||||||| ||||||| || ||||||||||| |||||    
T  28733434 tgatgtagtaaatccgcaagtgcgcggtttaccgaagtagtaaaaagagagtatcgttccgaca 28733497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 119
Target Start/End: Complemental strand, 29597114 - 29597067
Alignment:
Q  73 caagtgcacggt-ttaccgatgtagtaataaagagtatcgtttcgaca 119  Q
    |||||||||||| ||||||| ||||||||||||||||||||| |||||    
T  29597114 caagtgcacggtcttaccgaagtagtaataaagagtatcgttccgaca 29597067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 10916629 - 10916568
Alignment:
Q  64 gtaaatccacaagtgcacggtttaccgatgtagtaataaagagtatcgtttcgacaagaagtt 126  Q
    |||||||  ||| ||||||||||||||| ||||||| ||||||||||||| ||||| ||||||    
T  10916629 gtaaatctgcaaatgcacggtttaccgaagtagtaa-aaagagtatcgttccgacaggaagtt 10916568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 113
Target Start/End: Original strand, 19612037 - 19612087
Alignment:
Q  64 gtaaatccacaagtgcacggtttaccgatgtagtaataa-agagtatcgtt 113  Q
    |||||||| ||||||||||||||||||| ||||||| || |||||||||||    
T  19612037 gtaaatccgcaagtgcacggtttaccgaagtagtaaaaagagagtatcgtt 19612087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 113
Target Start/End: Original strand, 23509699 - 23509749
Alignment:
Q  64 gtaaatccacaagtgcacggtttaccgatgtagtaataa-agagtatcgtt 113  Q
    |||||||| ||||||||||||||||||| ||||||| || |||||||||||    
T  23509699 gtaaatccgcaagtgcacggtttaccgaagtagtaaaaagagagtatcgtt 23509749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 8604293 - 8604237
Alignment:
Q  64 gtaaatccacaagtgcacggtt-taccgatgtagtaat--aaagagtatcgtttcga 117  Q
    ||||| || ||||||||||||| |||||||||||||||  |||||||||||||||||    
T  8604293 gtaaaaccgcaagtgcacggttctaccgatgtagtaataaaaagagtatcgtttcga 8604237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 18976316 - 18976357
Alignment:
Q  73 caagtgcacggt-ttaccgatgtagtaataaagagtatcgtt 113  Q
    |||||||||||| ||||||| |||||||||||||||||||||    
T  18976316 caagtgcacggtcttaccgaagtagtaataaagagtatcgtt 18976357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 22164329 - 22164370
Alignment:
Q  73 caagtgcacggt-ttaccgatgtagtaataaagagtatcgtt 113  Q
    |||||||||||| ||||||| |||||||||||||||||||||    
T  22164329 caagtgcacggtcttaccgaagtagtaataaagagtatcgtt 22164370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 131
Target Start/End: Complemental strand, 1126967 - 1126907
Alignment:
Q  73 caagtgcacggt-ttaccgatgtagtaataa-agagtatcgtttcgacaagaagttatgaa 131  Q
    |||||||||||| ||||||| ||||||| || ||||||||||||||||| | |||||||||    
T  1126967 caagtgcacggtcttaccgaagtagtaaaaatagagtatcgtttcgacagggagttatgaa 1126907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 131
Target Start/End: Original strand, 1176756 - 1176816
Alignment:
Q  73 caagtgcacggttt-accgatgtagtaataaa-gagtatcgtttcgacaagaagttatgaa 131  Q
    |||||||||||||| ||||| ||||||||||| |||||||||| ||||| | |||||||||    
T  1176756 caagtgcacggttttaccgaagtagtaataaaagagtatcgttccgacagggagttatgaa 1176816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 83 - 241
Target Start/End: Original strand, 24220873 - 24221033
Alignment:
Q  83 gtttaccgatgtagtaataaagagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattagatgaaagtttcaaaggtaaaaagtt 181  Q
    ||||||||||||| ||||||||||||||||| ||||| | |||||||||||||| |||||||||| |||||||||| ||||| ||| | | |||||||||    
T  24220873 gtttaccgatgtaataataaagagtatcgttccgacagggagttatgaagttgattcacttttaacaatgattagaagaaag-ttcgaggttaaaaagtt 24220971  T
Q  182 --ggatttttgtttgattgaaaataataataataaaaacaccttgggattattggttcatct 241  Q
      |  |||||  |||| |||||||||||||||||||||| ||| ||||||||||||||||||    
T  24220972 tagattttttaattgaatgaaaataataataataaaaacgcctagggattattggttcatct 24221033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 85 - 189
Target Start/End: Original strand, 14877643 - 14877749
Alignment:
Q  85 ttaccgatgtagtaataaa-gagtatcgtttcgacaagaagttatgaagttga--tcacttttaataatgattagatgaaagtttcaaaggtaaaaagtt 181  Q
    |||||| |||||||||||| |||||||||| ||||||| |||||||| ||| |  | |||||||||||||||||||||||||||||||| || |||||||    
T  14877643 ttaccggtgtagtaataaaagagtatcgttccgacaaggagttatga-gttcaattaacttttaataatgattagatgaaagtttcaaaagttaaaagtt 14877741  T
Q  182 ggattttt 189  Q
    ||||||||    
T  14877742 ggattttt 14877749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 73 - 189
Target Start/End: Complemental strand, 23694559 - 23694440
Alignment:
Q  73 caagtgcacggtt-taccgatgtagtaataaa-gagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattagatgaaagtttcaa 169  Q
    ||||||||||||| ||||| |||||||||||| |||||||||| ||||| | ||||||||| |  | | |||||||||||||||||||||||| ||||||    
T  23694559 caagtgcacggttctaccggtgtagtaataaaagagtatcgttccgacagggagttatgaattcaattaacttttaataatgattagatgaaaatttcaa 23694460  T
Q  170 aggtaaaaagttggattttt 189  Q
    |||| |||| ||||||||||    
T  23694459 aggttaaaatttggattttt 23694440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 73 - 189
Target Start/End: Complemental strand, 33633232 - 33633114
Alignment:
Q  73 caagtgcacggtt-taccgatgtagtaataaagagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattagatgaaagtttcaaa 170  Q
    ||||||||||||| ||||| |||||||| ||||||||||||||||||| | ||||||||| |  | | ||||||||||||||| ||||||||||||||||    
T  33633232 caagtgcacggttctaccggtgtagtaa-aaagagtatcgtttcgacagggagttatgaattcaattaacttttaataatgatcagatgaaagtttcaaa 33633134  T
Q  171 ggtaaaaag-ttggattttt 189  Q
    ||| ||||| ||||||||||    
T  33633133 ggttaaaagtttggattttt 33633114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 77 - 241
Target Start/End: Complemental strand, 18959956 - 18959791
Alignment:
Q  77 tgcacggtttaccgatgtagtaataaagagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattagatgaaagtttcaaaggtaa 175  Q
    |||||||||||||| |||||||| ||||||||||||| |||||   ||||||||| |  | | ||||| |||||||||||||||| ||||| ||   ||     
T  18959956 tgcacggtttaccgttgtagtaacaaagagtatcgttccgacagagagttatgaattcaattaactttaaataatgattagatgagagttt-aagattag 18959858  T
Q  176 aaag-ttggatttttgtttgattgaaaataataataataaaaacaccttgggattattggttcatct 241  Q
    |||| ||||||||||  |||| |||||||| ||||||||||| |  |||||||||||||||||||||    
T  18959857 aaagtttggatttttaattgaatgaaaatattaataataaaagcgtcttgggattattggttcatct 18959791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 214
Target Start/End: Complemental strand, 18162802 - 18162657
Alignment:
Q  73 caagtgcacggtt-taccgatgtagtaataaa-gagtatcgtttcgacaagaagttatgaagttgatca-cttttaataatgattaga-tgaaagtttca 168  Q
    ||||||||||||| ||||| |||||||||||| |||||| ||| ||||| | ||||||||| |  || | |||||||||||||||||| |||||||||      
T  18162802 caagtgcacggttctaccggtgtagtaataaaagagtattgttccgacagggagttatgaattcaattaacttttaataatgattagattgaaagtttag 18162703  T
Q  169 aaggtaaaaagttggatttttgtttgattgaaaataataataataa 214  Q
    |||||| ||||||| |||||||||| |  |||||||| ||||||||    
T  18162702 aaggtagaaagttgtatttttgtttaaaagaaaataacaataataa 18162657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 117
Target Start/End: Original strand, 14155981 - 14156040
Alignment:
Q  57 tgatgtcgtaaatccacaagtgcacggtttaccgatgtagtaataaagagtatcgtttcga 117  Q
    |||||| |||||||| ||||||||||||||||||| ||||||| |||||||||||||||||    
T  14155981 tgatgtagtaaatccgcaagtgcacggtttaccgaagtagtaa-aaagagtatcgtttcga 14156040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 205
Target Start/End: Original strand, 17515198 - 17515303
Alignment:
Q  101 aaagagtatcgtttcgacaagaagttatgaagtt-gatcacttttaataatgattagatgaaagtttcaaaggtaaaaagttggatttttgtttgattga 199  Q
    ||||||||||||| ||||| | ||||||||| |  | | ||||||||||||||||||||| ||| ||  |||||| ||||||| |||||||||| | |||    
T  17515198 aaagagtatcgttccgacagggagttatgaattcagttaacttttaataatgattagatgtaaggttagaaggtagaaagttgtatttttgtttaaatga 17515297  T
Q  200 aaataa 205  Q
    ||||||    
T  17515298 aaataa 17515303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 65 - 131
Target Start/End: Complemental strand, 6280684 - 6280618
Alignment:
Q  65 taaatccacaagtgcacggtttaccgatgtagtaataaagagtatcgtttcgacaagaagttatgaa 131  Q
    |||| ||||||||||||||||||| ||||||||||  || ||||||||| ||||| | |||||||||    
T  6280684 taaaaccacaagtgcacggtttacagatgtagtaaacaaaagtatcgttccgacagggagttatgaa 6280618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 1989786 - 1989855
Alignment:
Q  64 gtaaatccacaagtgcacggtt-taccgatgtagtaataaa-gagtatcgtttcgacaagaagttatgaa 131  Q
    ||||| || ||||||||||||| |||||| ||||||||||| |||||||||| ||||||| |||||||||    
T  1989786 gtaaaaccgcaagtgcacggttctaccgaagtagtaataaaagagtatcgttccgacaaggagttatgaa 1989855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 109
Target Start/End: Complemental strand, 24342675 - 24342623
Alignment:
Q  57 tgatgtcgtaaatccacaagtgcacggtttaccgatgtagtaataaagagtat 109  Q
    |||||| |||||||| |||||||| ||||||||  ||||||||||||||||||    
T  24342675 tgatgtagtaaatccgcaagtgcatggtttaccagtgtagtaataaagagtat 24342623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 166
Target Start/End: Complemental strand, 25397737 - 25397641
Alignment:
Q  73 caagtgcacggt-ttaccgatgtagtaataaa-gagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattagatgaaagttt 166  Q
    |||||||||||| ||| ||| ||||||||||| |||||||||| ||||| ||||||||||| |  | | ||||| |||||||||||||||| |||||    
T  25397737 caagtgcacggtcttaacgaagtagtaataaaagagtatcgttccgacaggaagttatgaattcaattaactttaaataatgattagatgagagttt 25397641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 166
Target Start/End: Complemental strand, 25734066 - 25733970
Alignment:
Q  73 caagtgcacggt-ttaccgatgtagtaataaa-gagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattagatgaaagttt 166  Q
    |||||||||||| ||| ||| ||||||||||| |||||||||| ||||| ||||||||||| |  | | ||||| |||||||||||||||| |||||    
T  25734066 caagtgcacggtcttatcgaagtagtaataaaagagtatcgttccgacaggaagttatgaattcaattaactttaaataatgattagatgagagttt 25733970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 119
Target Start/End: Original strand, 8328293 - 8328340
Alignment:
Q  73 caagtgcacggt-ttaccgatgtagtaataaagagtatcgtttcgaca 119  Q
    |||||||||||| ||||||| ||||||||||||||||||||| |||||    
T  8328293 caagtgcacggtcttaccgaagtagtaataaagagtatcgttccgaca 8328340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 238
Target Start/End: Complemental strand, 15636656 - 15636618
Alignment:
Q  199 aaaataataataataaaaacaccttgggattattggttca 238  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  15636656 aaaataataataa-aaaaacaccttgggattattggttca 15636618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 6280417 - 6280355
Alignment:
Q  180 ttggatttttgtttgattgaaaataataataataaaaa-caccttgggattattggttcatct 241  Q
    ||||||||||  ||||  ||||||||||| |||||||| | ||||||||||||||||||||||    
T  6280417 ttggatttttaattgaaagaaaataataaaaataaaaaacgccttgggattattggttcatct 6280355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 99
Target Start/End: Complemental strand, 24059756 - 24059714
Alignment:
Q  57 tgatgtcgtaaatccacaagtgcacggtttaccgatgtagtaa 99  Q
    |||||| |||||||| ||||||||||||||||||| |||||||    
T  24059756 tgatgtagtaaatccgcaagtgcacggtttaccgaagtagtaa 24059714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 55 - 241
Target Start/End: Complemental strand, 15523826 - 15523634
Alignment:
Q  55 agtgatgtcgtaaatccacaagtgcacggtttaccgatgtagtaataaagagtatcgtttcgacaagaagttatgaagttga-tcactttt-aataatga 152  Q
    |||||||| |||||||   ||||||||||| ||| |||||||||||||||| ||||||| ||||| | ||| |||||||||| ||| |||| || |||||    
T  15523826 agtgatgtagtaaatctgtaagtgcacggtatactgatgtagtaataaagattatcgttccgacatggagtaatgaagttgattcatttttaaacaatga 15523727  T
Q  153 ttaga-tgaaagtttcaaaggtaaaaagtt-ggatttttgtttgatt--gaaaataataataataaaaacaccttgggattattggttcatct 241  Q
    ||||| ||||||||  |||| ||||||||| ||||||||||||||||   ||||||| |||||||||||  ||||||||||||||||||||||    
T  15523726 ttagattgaaagttcaaaagttaaaaagttgggatttttgtttgatttaaaaaataacaataataaaaatgccttgggattattggttcatct 15523634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 54 - 241
Target Start/End: Complemental strand, 12348770 - 12348578
Alignment:
Q  54 gagtgatgtcgtaaatccacaagtgcacggtttaccgatgtagtaataaagag-tatcgtttcgacaagaagttatgaagttgat-cacttttaat-aat 150  Q
    |||||||||||||||||| |||||||| ||||||| || ||||||||||| || ||||||| ||||| | ||||||||| || || |||| ||||  |||    
T  12348770 gagtgatgtcgtaaatccgcaagtgcatggtttactgaagtagtaataaaaagatatcgttccgacatggagttatgaattttattcactcttaaacaat 12348671  T
Q  151 gattagat-gaaagtttcaaaggtaaaaagttggatttttgtttg-attgaaaataataataataaaaacaccttgggattattggttcatct 241  Q
    |||||||| || | |||||||| ||||| |||| ||||||||||  |   ||||||| |||||||||||| ||||||||||||||||||||||    
T  12348670 gattagattgagattttcaaagttaaaatgttgtatttttgttttcaaataaaataacaataataaaaactccttgggattattggttcatct 12348578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 73 - 189
Target Start/End: Original strand, 15706552 - 15706671
Alignment:
Q  73 caagtgcacggtt-taccgatgtagtaataaa-gagtatcgtttcgacaagaagttatgaagtt-gatcacttttaataatgattagatgaaagtttcaa 169  Q
    ||||||||||||| ||||| |||||||||||| |||||||||||||| | ||| ||||||| |  | | |||||||||||||||||||||||||||||||    
T  15706552 caagtgcacggttctaccggtgtagtaataaaagagtatcgtttcgataggaaattatgaattcagttaacttttaataatgattagatgaaagtttcaa 15706651  T
Q  170 aggtaaaaagttggattttt 189  Q
    |||| |||||||||||||||    
T  15706652 aggttaaaagttggattttt 15706671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 152 - 214
Target Start/End: Original strand, 678891 - 678953
Alignment:
Q  152 attagatgaaagtttcaaaggtaaaaagttggatttttgtttgattgaaaataataataataa 214  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  678891 attagatgaaaatttcaaaggtaaaaagttggatttttgtttgattgaaaataataataataa 678953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 64 - 210
Target Start/End: Original strand, 17205855 - 17206000
Alignment:
Q  64 gtaaatccacaagtgcacggtttaccgatgtagtaataaagagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattagatgaaa 162  Q
    ||||||||  |||||||||||||||||||||||||||||||| ||||||| | ||||| ||||||||| |||| | ||||| || |||| |||||||| |    
T  17205855 gtaaatccggaagtgcacggtttaccgatgtagtaataaaga-tatcgttccaacaaggagttatgaatttgattaactttcaacaatggttagatgaga 17205953  T
Q  163 gtttcaaaggtaaaaag-ttggatttttgtttgattgaaaataataata 210  Q
    ||||  ||| ||||||| |||||||||| ||||| | ||||||| ||||    
T  17205954 gttt--aagttaaaaagtttggatttttatttgaattaaaataacaata 17206000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 73 - 131
Target Start/End: Original strand, 3375817 - 3375875
Alignment:
Q  73 caagtgcacggtttaccgatgtagtaataaagagtatcgtttcgacaagaagttatgaa 131  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||    
T  3375817 caagtgcacggtttaccgatgtagtaataaagagtatcgttccgacagggagttatgaa 3375875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 57 - 237
Target Start/End: Complemental strand, 17912379 - 17912196
Alignment:
Q  57 tgatgtcgtaaatccacaagtgcacggtttaccgatgtagtaataaagag-tatcgtttcgacaagaagttatgaagttga-tcacttttaataatgatt 154  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||| || ||||||| ||| |   ||||||||| || | | || ||||| |||||||    
T  17912379 tgatgtagtaaatccgcaagtgcacggtttaccgatgtagtaataaaaagatatcgttgcgatagagagttatgaatttaattaacctttaacaatgatt 17912280  T
Q  155 agatgaaagtttcaaaggtaaaaagttggatttttgtttgattgaaaata----ataataataaaaacaccttgggattattggttc 237  Q
    |||  |||||||   || ||||| |||||| |||||||||||| |||| |    ||||||||| || ||||||||||||||||||||    
T  17912279 agaataaagttt--gagttaaaaggttgga-ttttgtttgatttaaaagaaaatataataatataagcaccttgggattattggttc 17912196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 216
Target Start/End: Original strand, 8786580 - 8786738
Alignment:
Q  64 gtaaatccacaagtgcacggtt-taccgatgtagtaataaagagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattaga-tga 160  Q
    ||||| |||||||||||||||| |||||| ||||||| |||||||||||||  |||| | ||||||||| |  | | |||||||| |||||||||| |||    
T  8786580 gtaaaaccacaagtgcacggttctaccgaagtagtaa-aaagagtatcgttatgacatgtagttatgaattcaattaacttttaacaatgattagattga 8786678  T
Q  161 aagtttcaaaggtaaaaagttggatttttgtttgatt----gaaaataataataataaaa 216  Q
    ||||||  |||||| ||||||| |||||||||| |||    |||||||| ||||||||||    
T  8786679 aagtttagaaggtagaaagttgtatttttgtttaattaaaagaaaataacaataataaaa 8786738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 216
Target Start/End: Complemental strand, 9005371 - 9005222
Alignment:
Q  73 caagtgcacggt-ttaccgatgtagtaataaagagtatcgtttcgacaagaagttatgaagttgatca-cttttaataatgattaga-tgaaagtttcaa 169  Q
    |||||||||||| ||||||| | ||||||||| ||||||||| | ||| | ||||||||| |  || | |||||||||||||||||| ||||||||| ||    
T  9005371 caagtgcacggtcttaccgaaggagtaataaa-agtatcgttccaacagggagttatgaattcaattaacttttaataatgattagattgaaagtttaaa 9005273  T
Q  170 aggtaaaaagttggatttttgtttgatt----gaaaataataataataaaa 216  Q
    ||||| ||||||| |||||||||| |||    |||||||| ||||||||||    
T  9005272 aggtagaaagttgtatttttgtttaattaaaagaaaataacaataataaaa 9005222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 211
Target Start/End: Original strand, 48354870 - 48355010
Alignment:
Q  73 caagtgcacggt-ttaccgatgtagtaataaagagtatcgtttcgacaagaagttatgaagtt-gatcacttttaataatgattaga-tgaaagtttcaa 169  Q
    |||||||||||| ||||||| ||||||||||| ||||||||| ||||| | ||||||||| |  | | |||||||| |||||||||| |||||||||  |    
T  48354870 caagtgcacggtcttaccgaagtagtaataaa-agtatcgttccgacatggagttatgaattcagttaacttttaacaatgattagattgaaagtttaga 48354968  T
Q  170 aggtaaaaagttggatttttgtttgattgaaaataataataa 211  Q
    ||||| ||||||| |||||||||| |  |||||||| |||||    
T  48354969 aggtagaaagttgtatttttgtttaaaagaaaataacaataa 48355010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 73 - 240
Target Start/End: Complemental strand, 13435627 - 13435457
Alignment:
Q  73 caagtgcacggt-ttaccgatgtagtaataaa-gagtatcgtttcgacaagaagttatgaagttgatcacttttaataatgattagatgaaagtttcaaa 170  Q
    |||||||||| | ||||| | ||||||||||| |||||||||||||||| | ||||||||| |  || || ||||||||||||||||||| ||||| | |    
T  13435627 caagtgcacgatcttaccaaagtagtaataaaagagtatcgtttcgacagggagttatgaattcaattacctttaataatgattagatgagagtttgaga 13435528  T
Q  171 ggtaaaaag-ttggatttttgtttgattgaaaataataataataaaaaca-ccttgggattattggttcatc 240  Q
      || |||| ||||| ||||  || |  |||||||||||||||||||  | |||||||||||||||||||||    
T  13435527 -ttataaagtttggaattttaattaaaagaaaataataataataaaaggagccttgggattattggttcatc 13435457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 131
Target Start/End: Original strand, 4460086 - 4460161
Alignment:
Q  55 agtgatgtcgtaaatccacaagtgcacggtttaccgatgtagtaataaagagtatcgtttcgacaagaagttatgaa 131  Q
    |||||||| |||||||| ||||||||||||||| ||| | ||||| ||||||||||||| ||||| | |||||||||    
T  4460086 agtgatgtagtaaatccgcaagtgcacggtttatcgaagcagtaa-aaagagtatcgttccgacagggagttatgaa 4460161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 4982455 - 4982511
Alignment:
Q  57 tgatgtcgtaaatccacaagtgcacggtttaccgatgtagtaataaagagtatcgtt 113  Q
    |||||| |||||||| |||||| |||||||||||| || ||||||||||||||||||    
T  4982455 tgatgtagtaaatcctcaagtgtacggtttaccgaagtggtaataaagagtatcgtt 4982511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 30061350 - 30061418
Alignment:
Q  64 gtaaatccacaagtgcacggtttaccgatgtagtaataaagag-tatcgtttcgacaagaagttatgaa 131  Q
    |||||||| ||||||||||||||||| ||||||||||||| || ||||||| ||||| | |||||||||    
T  30061350 gtaaatccgcaagtgcacggtttaccaatgtagtaataaaaagatatcgttccgacagggagttatgaa 30061418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 85 - 189
Target Start/End: Original strand, 648097 - 648202
Alignment:
Q  85 ttaccgatgtagtaataaagagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattaga-tgaaagtttcaaaggtaaaaagttg 182  Q
    ||||||| ||||||||||| ||||||||| ||||| ||||||||||| |  | | |||||||| |||||||||| ||||||||| ||| ||| |||||||    
T  648097 ttaccgaagtagtaataaa-agtatcgttccgacatgaagttatgaactcaattaacttttaacaatgattagattgaaagtttaaaaagtagaaagttg 648195  T
Q  183 gattttt 189  Q
     ||||||    
T  648196 cattttt 648202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 240
Target Start/End: Original strand, 8779750 - 8779928
Alignment:
Q  73 caagtgcacggtt-taccgatgtagtaataaagagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattaga-tgaaagtttcaa 169  Q
    ||||||||||||| |||| | ||||||| ||||||||||||| ||||| | ||||||||| |  | | |||||||| |||||||||| | |||||||  |    
T  8779750 caagtgcacggttctaccaaagtagtaa-aaagagtatcgttccgacagggagttatgaattcaattaacttttaacaatgattagattcaaagtttaga 8779848  T
Q  170 aggtaaaaagttggatttttgtttgatt----gaaaataataat-----aataaaaacaccttgggattattggttcatc 240  Q
    ||||| ||||||| |||||||||| |||    |||||||| |||     ||||||| | |||||||||||||||||||||    
T  8779849 aggtagaaagttgtatttttgtttaattaaaagaaaataacaataataaaataaaagcgccttgggattattggttcatc 8779928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 99
Target Start/End: Complemental strand, 38878225 - 38878183
Alignment:
Q  57 tgatgtcgtaaatccacaagtgcacggtttaccgatgtagtaa 99  Q
    ||||||||||||||| ||||||||||||||||||| |||||||    
T  38878225 tgatgtcgtaaatccgcaagtgcacggtttaccgaagtagtaa 38878183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 214
Target Start/End: Complemental strand, 13734876 - 13734723
Alignment:
Q  65 taaatccacaagtgcacggtt-taccgatgtagtaataa-agagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattaga-tga 160  Q
    |||| |||||||||||||||| || ||| ||||||| || | | ||||||| ||||| | ||||||||| |  | | ||||| ||||||||||||| |||    
T  13734876 taaaaccacaagtgcacggttctatcgaagtagtaaaaatatattatcgttccgacagggagttatgaattcaattaactttaaataatgattagattga 13734777  T
Q  161 aagtttcaaaggtaaaaagttggatttttgtttgattgaaaataataataataa 214  Q
    ||||||  |||||| ||||||| |||||||||| |  |||||||| ||||||||    
T  13734776 aagtttagaaggtagaaagttgtatttttgtttaaaagaaaataacaataataa 13734723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 22245661 - 22245698
Alignment:
Q  141 ttttaataatgattagatgaaagtttcaaaggtaaaaa 178  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  22245661 ttttaataatgattagatgaaagtttcaaaggttaaaa 22245698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 162
Target Start/End: Complemental strand, 827059 - 826959
Alignment:
Q  65 taaatccacaagtgcacggt-ttaccgatgtagtaata-aagagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattagatgaa 161  Q
    |||| ||||||||||||||| ||||||| ||||||| | |||||||||||| ||||| | ||||||||| |  | | ||||||||| |||||||||||||    
T  827059 taaaaccacaagtgcacggtcttaccgaagtagtaaaataagagtatcgttccgacagggagttatgaattcaattaacttttaatgatgattagatgaa 826960  T
Q  162 a 162  Q
    |    
T  826959 a 826959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 162
Target Start/End: Complemental strand, 829070 - 828970
Alignment:
Q  65 taaatccacaagtgcacggt-ttaccgatgtagtaata-aagagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattagatgaa 161  Q
    |||| ||||||||||||||| ||||||| ||||||| | |||||||||||| ||||| | ||||||||| |  | | ||||||||| |||||||||||||    
T  829070 taaaaccacaagtgcacggtcttaccgaagtagtaaaataagagtatcgttccgacagggagttatgaattcaattaacttttaatgatgattagatgaa 828971  T
Q  162 a 162  Q
    |    
T  828970 a 828970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 131
Target Start/End: Complemental strand, 320433 - 320374
Alignment:
Q  73 caagtgcacggt-ttaccgatgtagtaataaagagtatcgtttcgacaagaagttatgaa 131  Q
    |||||||||||| ||||||| ||||||| | ||||||||||| ||||||| |||||||||    
T  320433 caagtgcacggtcttaccgaagtagtaaaatagagtatcgttccgacaaggagttatgaa 320374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 103
Target Start/End: Original strand, 4465088 - 4465127
Alignment:
Q  64 gtaaatccacaagtgcacggtttaccgatgtagtaataaa 103  Q
    |||||| | |||||||||||||||||||||||||||||||    
T  4465088 gtaaattcgcaagtgcacggtttaccgatgtagtaataaa 4465127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 8837350 - 8837284
Alignment:
Q  64 gtaaatccacaagtgcacggtttaccgatgtagtaataaagagtatcgtttcgacaagaagttatgaa 131  Q
    |||||||| ||||||||||||||||| |  ||||||| |||||||| ||||||||| | |||||||||    
T  8837350 gtaaatccgcaagtgcacggtttaccaaaatagtaat-aagagtattgtttcgacagggagttatgaa 8837284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 119
Target Start/End: Complemental strand, 14753552 - 14753505
Alignment:
Q  73 caagtgcacggt-ttaccgatgtagtaataaagagtatcgtttcgaca 119  Q
    |||||||||||| ||||||| ||||||||||||||||||||| |||||    
T  14753552 caagtgcacggtcttaccgaagtagtaataaagagtatcgttccgaca 14753505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 162
Target Start/End: Complemental strand, 822040 - 821946
Alignment:
Q  71 cacaagtgcacggttt-accgatgtagtaata-aagagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattagatgaaa 162  Q
    |||||||||||||||| ||||| ||||||| | |||||||||||| ||||| | ||||||||| |  | | ||||||||| ||||||||||||||    
T  822040 cacaagtgcacggttttaccgaagtagtaaaataagagtatcgttccgacagggagttatgaattcaattaacttttaatgatgattagatgaaa 821946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 119
Target Start/End: Original strand, 11483155 - 11483216
Alignment:
Q  57 tgatgtcgtaaatccacaagtgcacggtttaccgatgtagtaataaagagtatcgtttcgaca 119  Q
    |||||| |||||||| || |||||| |||||||| ||||||||| |||||||||||| |||||    
T  11483155 tgatgtagtaaatccgcaggtgcacagtttaccggtgtagtaat-aagagtatcgttccgaca 11483216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 4255912 - 4255953
Alignment:
Q  57 tgatgtcgtaaatccacaagtgcacggtttaccgatgtagta 98  Q
    |||||| |||||||| ||||||||||||||||||| ||||||    
T  4255912 tgatgtagtaaatccgcaagtgcacggtttaccgaagtagta 4255953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 163
Target Start/End: Original strand, 16330178 - 16330271
Alignment:
Q  73 caagtgcacggt-ttaccgatgtagtaata-aagagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattagatgaaag 163  Q
    |||||||||||| ||||||| ||||||| | |||||||||||| ||||| | ||||||||| |  | | ||||||||| |||||||||||||||    
T  16330178 caagtgcacggtcttaccgaagtagtaaaataagagtatcgttccgacagggagttatgaattcaattaacttttaatgatgattagatgaaag 16330271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 188
Target Start/End: Complemental strand, 5398487 - 5398401
Alignment:
Q  103 agagtatcgtttcgacaagaagttatgaagttga--tcacttttaataatgattagatgaaagtttcaaaggtaaaaagttggatttt 188  Q
    ||||||||||| ||||| | ||||||||| ||||  | |||||||||||||||||||||||||  |   || ||||||||||||||||    
T  5398487 agagtatcgttccgacagggagttatgaa-ttgaagtaacttttaataatgattagatgaaagagttttagataaaaagttggatttt 5398401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 162
Target Start/End: Complemental strand, 15463724 - 15463632
Alignment:
Q  73 caagtgcacggt-ttaccgatgtagtaata-aagagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattagatgaaa 162  Q
    |||||||||||| ||||||| ||||||| | |||||||||||| ||||| | ||||||||| |  | | ||||||||| ||||||||||||||    
T  15463724 caagtgcacggtcttaccgaagtagtaaaataagagtatcgttccgacagggagttatgaattcaattaacttttaatgatgattagatgaaa 15463632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 166
Target Start/End: Complemental strand, 23204594 - 23204498
Alignment:
Q  73 caagtgcacggt-ttaccgatgtagtaata-aagagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattagatgaaagttt 166  Q
    |||||||||||| ||||||| ||||||| | |||||||||||| ||||| | ||||||||| |  | | ||||||||| ||||||||||||| ||||    
T  23204594 caagtgcacggtcttaccgaagtagtaaaataagagtatcgttccgacagggagttatgaattcaattaacttttaatgatgattagatgaaggttt 23204498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 166
Target Start/End: Complemental strand, 23510721 - 23510625
Alignment:
Q  73 caagtgcacggt-ttaccgatgtagtaata-aagagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattagatgaaagttt 166  Q
    |||||||||||| ||||||| ||||||| | |||||||||||| ||||| | ||||||||| |  | | ||||||||| ||||||||||||| ||||    
T  23510721 caagtgcacggtcttaccgaagtagtaaaataagagtatcgttccgacagggagttatgaattcaattaacttttaatgatgattagatgaaggttt 23510625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 166
Target Start/End: Complemental strand, 23516503 - 23516407
Alignment:
Q  73 caagtgcacggt-ttaccgatgtagtaata-aagagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattagatgaaagttt 166  Q
    |||||||||||| ||||||| ||||||| | |||||||||||| ||||| | ||||||||| |  | | ||||||||| ||||||||||||| ||||    
T  23516503 caagtgcacggtcttaccgaagtagtaaaataagagtatcgttccgacagggagttatgaattcaattaacttttaatgatgattagatgaaggttt 23516407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 189
Target Start/End: Complemental strand, 41723510 - 41723382
Alignment:
Q  65 taaatccacaagtgcacggtt-taccgatgtagtaataa-agagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattaga-tga 160  Q
    ||||||| ||||||||||||| || ||| ||||||| || ||||||||||| ||||| | ||||||||| |  | | ||||| ||||||||||||| |||    
T  41723510 taaatccgcaagtgcacggttctatcgaagtagtaaaaatagagtatcgttccgacagggagttatgaattcaattaactttaaataatgattagattga 41723411  T
Q  161 aagtttcaaaggtaaaaagttggattttt 189  Q
    ||||||  || ||| ||||||| ||||||    
T  41723410 aagtttagaaagtagaaagttgtattttt 41723382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 67 - 173
Target Start/End: Complemental strand, 39317 - 39210
Alignment:
Q  67 aatccacaagtgcacggtttaccgatgtagtaataaagagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattagatgaaagtt 165  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||  || | | ||||||||| |||| |||||||||| ||||||||||||||||||    
T  39317 aatccacaagtgcacggtttaccgatgtagtaataaaaagtattgttctgatagggagttatgaatttgattcacttttaacaatgattagatgaaagtt 39218  T
Q  166 tcaaaggt 173  Q
    ||||||||    
T  39217 tcaaaggt 39210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 64 - 211
Target Start/End: Original strand, 23028895 - 23029043
Alignment:
Q  64 gtaaatccacaagtgcacggtttaccgatgtagtaataaagagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattagatgaaa 162  Q
    |||||||| ||||||||||||||||||| |||||||||||   ||||||| ||||| | ||||||||| |||| || |||||||||||||||||| ||||    
T  23028895 gtaaatccgcaagtgcacggtttaccgaagtagtaataaaagatatcgttccgacagggagttatgaatttgattcgcttttaataatgattagaagaaa 23028994  T
Q  163 gtttcaaaggtaaaaag-ttggatttttgtttgattgaaaataataataa 211  Q
    | ||| | | ||||||| |||||||||| ||||| |||||||||||||||    
T  23028995 g-ttcgaggttaaaaagtttggatttttatttgaatgaaaataataataa 23029043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 73 - 189
Target Start/End: Complemental strand, 20968515 - 20968396
Alignment:
Q  73 caagtgcacggtt-taccgatgtagtaataaa-gagtatcgtttcgacaagaagttatgaagttgatca-cttttaataatgattagatgaaagtttcaa 169  Q
    ||||||||||||| ||||| |||||||||||| |||||||||| ||| | | ||||||||| |  || | ||||||||||||| ||||||||||||||||    
T  20968515 caagtgcacggttctaccggtgtagtaataaaagagtatcgttccgatagggagttatgaattcaattaacttttaataatgactagatgaaagtttcaa 20968416  T
Q  170 aggtaaaaagttggattttt 189  Q
    |||| |||||||||||||||    
T  20968415 aggttaaaagttggattttt 20968396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 73 - 189
Target Start/End: Original strand, 25576940 - 25577060
Alignment:
Q  73 caagtgcacggt-ttaccgatgtagtaataaa-gagtatcgtttcgacaagaagttatgaagttgatca-cttttaataatgattagatgaaagtttcaa 169  Q
    |||||||||||| ||||||| ||||||| | | |||||||||| ||||| | ||||||||| |  || | ||||||||||||||||||||||||||||||    
T  25576940 caagtgcacggtcttaccgaagtagtaaaatatgagtatcgttccgacagggagttatgaattcaattaacttttaataatgattagatgaaagtttcaa 25577039  T
Q  170 aggtaaaaagt-tggattttt 189  Q
    |||| |||||| |||||||||    
T  25577040 aggttaaaagtctggattttt 25577060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 73 - 189
Target Start/End: Complemental strand, 34781108 - 34780988
Alignment:
Q  73 caagtgcacggt-ttaccgatgtagtaataaa-gagtatcgtttcgacaagaagttatgaagttgatca-cttttaataatgattagatgaaagtttcaa 169  Q
    |||||||||||| ||||||| ||||||| | | |||||||||| ||||| | ||||||||| |  || | ||||||||||||||||||||||||||||||    
T  34781108 caagtgcacggtcttaccgaagtagtaaaatatgagtatcgttccgacagggagttatgaattcaattaacttttaataatgattagatgaaagtttcaa 34781009  T
Q  170 aggtaaaaag-ttggattttt 189  Q
    |||| ||||| ||||||||||    
T  34781008 aggttaaaagtttggattttt 34780988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 237
Target Start/End: Complemental strand, 22171569 - 22171402
Alignment:
Q  73 caagtgcacggtttaccgatgtagtaataaagagtatcgtttcgacaagaagttatgaagttga--tcacttttaataatgattagatgaaagtttcaaa 170  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||| | |||| | || |  |  | ||| |||  |||||||||| || ||||| | |    
T  22171569 caagtgcacggtttaacgatgtagtaataaagagtatcgttccgacatggagttgttaaatccaattaactattatgaatgattagaagagagtttaata 22171470  T
Q  171 ggtaaaaagttggatttttgtttgattgaaaataataataataaaaa-caccttgggattattggttc 237  Q
    | | |||||||||  |||||||| ||  ||||||| ||||||||||| | | ||||||||||||||||    
T  22171469 gttgaaaagttgggattttgtttaatctaaaataacaataataaaaagcgctttgggattattggttc 22171402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 73 - 188
Target Start/End: Original strand, 18482993 - 18483111
Alignment:
Q  73 caagtgcacggtt-taccgatgtagtaataaa-gagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattagatgaaagtttcaa 169  Q
    ||||||||||||| ||||| |||||||||||| |||||||||| ||||| | ||||||||| |  | | |||||||||||||||||||||||||  |       
T  18482993 caagtgcacggttctaccggtgtagtaataaaagagtatcgttccgacagggagttatgaattcaagtaacttttaataatgattagatgaaagagtttt 18483092  T
Q  170 aggtaaaaagttggatttt 188  Q
    || ||||||||||||||||    
T  18483093 agataaaaagttggatttt 18483111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 239
Target Start/End: Complemental strand, 19890526 - 19890350
Alignment:
Q  65 taaatccacaagtgcacggtttaccgatgtagtaataaa-gagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattagatgaaa 162  Q
    ||||||| ||||||||||||||| ||| ||||||||||| |||||||||| ||||| | ||||||||| |  | | ||||| || ||||||||||  | |    
T  19890526 taaatccgcaagtgcacggtttatcgaagtagtaataaacgagtatcgttccgacagggagttatgaattcaattaactttcaacaatgattagaaaaga 19890427  T
Q  163 gtttcaaaggtaaaaag-ttggatttttgtttgattgaaaataataataataaaaacaccttgggattattggttcat 239  Q
    ||||   || || |||| ||||||||||  || |  ||||||||||| ||||||| | ||||||||||||||||||||    
T  19890426 gttt-tgagttataaagtttggatttttaattaaaagaaaataataaaaataaaagcgccttgggattattggttcat 19890350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 236
Target Start/End: Original strand, 20915292 - 20915461
Alignment:
Q  73 caagtgcacggtt-taccgatgtagtaataaa-gagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattagatgaaagtttcaa 169  Q
    ||||||||||||| || || | |||||||||| |||||||||| ||||| | ||||||||| |  | | ||||||||||||||||| |||||||||||||    
T  20915292 caagtgcacggttctatcggtatagtaataaaagagtatcgttccgacatggagttatgaattcaattaacttttaataatgattaaatgaaagtttcaa 20915391  T
Q  170 agg-taaaaag-ttggatttttgtttgattgaaaataataataataa-aaacaccttgggattattggtt 236  Q
    ||| ||||||| ||| ||||||  |||   ||||||||||| || || |||  |||||||||||||||||    
T  20915392 aggttaaaaagtttgaatttttaattggaagaaaataataaaaaaaataaaagccttgggattattggtt 20915461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 191 - 241
Target Start/End: Complemental strand, 24166918 - 24166868
Alignment:
Q  191 tttgattgaaaataataataataaaaacaccttgggattattggttcatct 241  Q
    |||||| |||||||| ||||||||||||  |||||||||||||||||||||    
T  24166918 tttgatagaaaataacaataataaaaacgtcttgggattattggttcatct 24166868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 131
Target Start/End: Original strand, 21733891 - 21733958
Alignment:
Q  65 taaatccacaagtgcacggt-ttaccgatgtagtaataaagagtatcgtttcgacaagaagttatgaa 131  Q
    |||| ||||||||||||||| ||||||| ||||||  ||||||||||||| ||||| | |||||||||    
T  21733891 taaaaccacaagtgcacggtcttaccgaagtagtataaaagagtatcgttccgacagggagttatgaa 21733958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 214
Target Start/End: Original strand, 21999819 - 21999964
Alignment:
Q  73 caagtgcacggtt-taccgatgtagtaataa-agagtatcgtttcgacaagaagttatgaagttgatca-cttttaataatgattaga-tgaaagtttca 168  Q
    ||||||||||||| || ||| ||||||| || ||||||||||| ||| | | ||||||||| |  || | ||||| |||||||||||| ||||| |||      
T  21999819 caagtgcacggttctatcgaagtagtaaaaatagagtatcgttccgatagggagttatgaattcaattaacttttgataatgattagattgaaattttag 21999918  T
Q  169 aaggtaaaaagttggatttttgtttgattgaaaataataataataa 214  Q
    |||||| ||||||| |||||||||| |  |||||||| ||||||||    
T  21999919 aaggtagaaagttgtatttttgtttaaaagaaaataacaataataa 21999964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 241
Target Start/End: Complemental strand, 23114954 - 23114863
Alignment:
Q  151 gattagatgaaagtttcaaaggtaaaaagttgg-atttttgtttgattgaaaat-aataataataaaaacaccttgggattattggttcatct 241  Q
    |||||| ||||||||| |||| | ||||||||| ||||||| | |||||||| | |||||| |||||| | | ||||||||||||||||||||    
T  23114954 gattagctgaaagttttaaagattaaaagttgggatttttgat-gattgaaagttaataatgataaaaccgcattgggattattggttcatct 23114863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 119
Target Start/End: Complemental strand, 23115052 - 23114989
Alignment:
Q  57 tgatgtcgtaaatccacaagtgcacg-gtttaccgatgtagtaataaagag-tatcgtttcgaca 119  Q
    ||||||||||||||||||||||||||  |||||||| ||||||| |||||| ||||||| |||||    
T  23115052 tgatgtcgtaaatccacaagtgcacgattttaccgaagtagtaa-aaagagttatcgttccgaca 23114989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 73 - 186
Target Start/End: Original strand, 18223 - 18339
Alignment:
Q  73 caagtgcacggtt-taccgatgtagtaataaa-gagtatcgtttcgacaagaagttatgaagttgatca-cttttaataatgattagatgaaagtttcaa 169  Q
    ||||||||||||| ||||| ||| |||||||| |||||||||| ||||| | ||||||||| || || | ||||||||||||||||||||||||||||||    
T  18223 caagtgcacggttctaccggtgtggtaataaaagagtatcgttccgacagggagttatgaatttaattaacttttaataatgattagatgaaagtttcaa 18322  T
Q  170 aggtaaaaagttggatt 186  Q
    |||| ||||||||||||    
T  18323 aggttaaaagttggatt 18339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0175 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 73 - 178
Target Start/End: Original strand, 11910 - 12018
Alignment:
Q  73 caagtgcacggtt-taccgatgtagtaataaa-gagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattagatgaaagtttcaa 169  Q
    ||||||||||||| ||||| |||||||||||| |||||||||||||||| | ||||||||| |  | | |||||||||||||||||||||||||||||||    
T  11910 caagtgcacggttctaccggtgtagtaataaaagagtatcgtttcgacatggagttatgaattcaattaacttttaataatgattagatgaaagtttcaa 12009  T
Q  170 aggtaaaaa 178  Q
    |||| ||||    
T  12010 aggttaaaa 12018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 73 - 189
Target Start/End: Complemental strand, 43441 - 43323
Alignment:
Q  73 caagtgcacggtt-taccgatgtagtaataaagagtatcgtttcgacaagaagttatgaagttgatca-cttttaataatgattagatgaaagtttcaaa 170  Q
    ||||||||||||| |||||||||||||| ||||||||||||| ||||  | ||||||||| |  || | |||||||||||||||||||||||||||||||    
T  43441 caagtgcacggttctaccgatgtagtaa-aaagagtatcgttccgacggggagttatgaattcaattaacttttaataatgattagatgaaagtttcaaa 43343  T
Q  171 ggtaaaaag-ttggattttt 189  Q
    ||| ||||| ||||||||||    
T  43342 ggttaaaagtttggattttt 43323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 73 - 189
Target Start/End: Complemental strand, 44538985 - 44538866
Alignment:
Q  73 caagtgcacggtt-taccgatgtagtaataaa-gagtatcgtttcgacaagaagttatgaagttgatca-cttttaataatgattagatgaaagtttcaa 169  Q
    ||||||||||||| ||||| |||||||||||| |||||||||| |||||   ||||||||| |  || | ||||||||||||||||||||||| ||||||    
T  44538985 caagtgcacggttctaccggtgtagtaataaaagagtatcgttccgacagacagttatgaattcaattaacttttaataatgattagatgaaaatttcaa 44538886  T
Q  170 aggtaaaaagttggattttt 189  Q
    |||| |||||||||||||||    
T  44538885 aggttaaaagttggattttt 44538866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 73 - 240
Target Start/End: Complemental strand, 17987356 - 17987187
Alignment:
Q  73 caagtgcacggtt-taccgatgtagtaataaa-gagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattagatgaaagtttcaa 169  Q
    |||||| |||||| ||||| |||||||||||| |||||||||| ||||| | ||||||||| |  | | ||||||||||||||||||||||| |||||||    
T  17987356 caagtgtacggttctaccggtgtagtaataaaagagtatcgttccgacagggagttatgaattcaattaacttttaataatgattagatgaatgtttcaa 17987257  T
Q  170 agg-taaaaag-ttggatttttgtttgattgaaaataataataataaaaacaccttgggattattggttcatc 240  Q
    ||| ||||||| ||||||||||  |||   ||||||||||| |||||||   |||||||||||||||||||||    
T  17987256 aggttaaaaagtttggatttttaattggaagaaaataataa-aataaaa--gccttgggattattggttcatc 17987187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 90 - 237
Target Start/End: Original strand, 16384285 - 16384431
Alignment:
Q  90 gatgtagtaataaagagtatcgtttcgacaagaagttatgaagttgatc-acttttaataatgattagat-gaaagtttcaaaggtaaaaagttggattt 187  Q
    ||||||||||||||   ||||||| ||||| | ||||||||| | |||  |||||||| ||||||||||| ||||||| ||||| |||||||||| ||||    
T  16384285 gatgtagtaataaaagatatcgttccgacatggagttatgaattcgatttacttttaacaatgattagattgaaagtt-caaagttaaaaagttg-attt 16384382  T
Q  188 ttgttt-gattgaaaataataataataaaaacaccttgggattattggttc 237  Q
    |||||| ||  ||||||||||||||||||| | ||||||||||||||||||    
T  16384383 ttgttttga--gaaaataataataataaaagcgccttgggattattggttc 16384431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 20860002 - 20860069
Alignment:
Q  64 gtaaatccacaagtgcacggtttaccgatgtagtaataaagagtatcgtttcgacaagaagttatgaa 131  Q
    |||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||| | |||||||||    
T  20860002 gtaaatccgcaagtgcacggtttaccgaagtagtaataaagactatcgtttcgacagggagttatgaa 20860069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 73 - 181
Target Start/End: Original strand, 23289289 - 23289400
Alignment:
Q  73 caagtgcacggt-ttaccgatgtagtaata-aagagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattagatgaaagtttcaa 169  Q
    |||||||||||| ||||||| ||||||| | |||||||||||| ||||| | ||||||||| |  | | ||||| |||||||||||||||||||||||||    
T  23289289 caagtgcacggtcttaccgaagtagtaaaataagagtatcgttccgacagggagttatgaattcaattaactttcaataatgattagatgaaagtttcaa 23289388  T
Q  170 aggtaaaaagtt 181  Q
    |||| |||||||    
T  23289389 aggttaaaagtt 23289400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 216
Target Start/End: Original strand, 26133656 - 26133792
Alignment:
Q  85 ttaccgatgtagtaataaagagtatcgtttcgacaagaagttatgaagttgatca-cttttaataatgattaga-tgaaagtttcaaaggtaaaaagttg 182  Q
    ||||||| ||||||||||| ||||||||| ||||| | ||||||||| |  || | ||||||| |||||||||| ||||||||| ||||||| |||||||    
T  26133656 ttaccgaagtagtaataaa-agtatcgttccgacagggagttatgaattcaattaacttttaacaatgattagattgaaagtttaaaaggtagaaagttg 26133754  T
Q  183 gatttttgtttgatt----gaaaataataataataaaa 216  Q
     |||||||||| |||    |||||||| ||||||||||    
T  26133755 catttttgtttaattaaaagaaaataacaataataaaa 26133792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 73 - 189
Target Start/End: Complemental strand, 13251484 - 13251365
Alignment:
Q  73 caagtgcacggt-ttaccgatgtagtaata-aagagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattagatgaaagtttcaa 169  Q
    |||||||||||| ||||||| ||||||| | |||||||||||| ||||| | ||||||||| |  | | ||||||||| ||||||||||||||||| |||    
T  13251484 caagtgcacggtcttaccgaagtagtaaaataagagtatcgttccgacagggagttatgaattcaattaacttttaatgatgattagatgaaagttccaa 13251385  T
Q  170 aggtaaaaagttggattttt 189  Q
    |||| |||  ||||||||||    
T  13251384 aggttaaagtttggattttt 13251365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 57 - 214
Target Start/End: Original strand, 13798688 - 13798846
Alignment:
Q  57 tgatgtcgtaaatccacaagtgcacggtttaccgatgtagtaataaagagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgatta 155  Q
    |||||| |||||||| |||||||||||||||||||  |||||| |||||||||||||||||||   ||||||||| |  | | ||||| |||||||||||    
T  13798688 tgatgtagtaaatccgcaagtgcacggtttaccgaaatagtaa-aaagagtatcgtttcgacagtgagttatgaattcaattaactttaaataatgatta 13798786  T
Q  156 ga-tgaaagtttcaaaggtaaaaagttggatttttgtttgattgaaaataataataataa 214  Q
    || ||| ||||| | |   ||||  ||||||||||  |||| ||| ||||||||||||||    
T  13798787 gattgagagtttgagattaaaaattttggatttttaattgaatgataataataataataa 13798846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 66 - 113
Target Start/End: Complemental strand, 20498336 - 20498289
Alignment:
Q  66 aaatccacaagtgcacggtttaccgatgtagtaataaagagtatcgtt 113  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||    
T  20498336 aaatccgcaagtgcacggtttaccgaagtagtaataaagagtatcgtt 20498289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 73 - 189
Target Start/End: Complemental strand, 41229077 - 41228959
Alignment:
Q  73 caagtgcacggtt-taccgatgtagtaataaagagtatcgtttcgacaagaagttatgaagttgatca-cttttaataatgattagatgaaagtttcaaa 170  Q
    ||||||||||||| ||| | |||||||| ||||||||||||| ||| | | ||||||||| |  || | |||||||||||||||| ||||||||||||||    
T  41229077 caagtgcacggttctacgggtgtagtaa-aaagagtatcgttccgatagggagttatgaattcaattaacttttaataatgattaaatgaaagtttcaaa 41228979  T
Q  171 ggtaaaaag-ttggattttt 189  Q
    ||| ||||| ||||||||||    
T  41228978 ggttaaaagtttggattttt 41228959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 73 - 131
Target Start/End: Complemental strand, 20449179 - 20449121
Alignment:
Q  73 caagtgcacggtttaccgatgtagtaataaagagtatcgtttcgacaagaagttatgaa 131  Q
    ||||||||| ||||||||| ||||||||||||||||||||| ||||| | |||||||||    
T  20449179 caagtgcacagtttaccgaagtagtaataaagagtatcgttccgacagggagttatgaa 20449121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 73 - 131
Target Start/End: Complemental strand, 20534945 - 20534887
Alignment:
Q  73 caagtgcacggtttaccgatgtagtaataaagagtatcgtttcgacaagaagttatgaa 131  Q
    ||||||||| ||||||||| ||||||||||||||||||||| ||||| | |||||||||    
T  20534945 caagtgcacagtttaccgaagtagtaataaagagtatcgttccgacagggagttatgaa 20534887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 211
Target Start/End: Original strand, 1869807 - 1869946
Alignment:
Q  73 caagtgcacggttt-accgatgtagtaataaagagtatcgtttcgacaagaagttatgaagttgatca-cttttaataatgattagatgaaagtttcaaa 170  Q
    |||||||||||||| ||||| ||||||| ||||||||||||| ||||| | |||| || | |||||   ||||| | |  |||||| ||||||||| |||    
T  1869807 caagtgcacggttttaccgaagtagtaa-aaagagtatcgttccgacagggagttgtgtaattgattttcttttcaaacagattagctgaaagttt-aaa 1869904  T
Q  171 ggtaaaaagttgg-atttttgtttgattgaaaataataataa 211  Q
    ||| ||||||||| |||||| |||||||||||||||||||||    
T  1869905 ggttaaaagttgggatttttatttgattgaaaataataataa 1869946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 113
Target Start/End: Original strand, 30817981 - 30818030
Alignment:
Q  64 gtaaatccacaagtgcacggtttaccgatgtagtaataaagagtatcgtt 113  Q
    |||||||| ||||||||||||| ||||| |||||||||||||||||||||    
T  30817981 gtaaatccgcaagtgcacggttcaccgaagtagtaataaagagtatcgtt 30818030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 189
Target Start/End: Complemental strand, 20405499 - 20405379
Alignment:
Q  73 caagtgcacggt-ttaccgatgtagtaataaa-gagtatcgtttcgacaagaagttatgaagttgatca-cttttaataatgattagatgaaagtttcaa 169  Q
    |||||||||||| ||||||| ||||||| | | |||||||||| |||||   ||||||||| |  || | ||||||| ||||||||||||||||||||||    
T  20405499 caagtgcacggtcttaccgaagtagtaaaatatgagtatcgttccgacagagagttatgaattcaattaacttttaacaatgattagatgaaagtttcaa 20405400  T
Q  170 aggtaaaaag-ttggattttt 189  Q
    |||| ||||| ||||||||||    
T  20405399 aggttaaaagtttggattttt 20405379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 23299666 - 23299610
Alignment:
Q  64 gtaaatccacaagtgcacggtttaccgatgtagtaataaa-gagtatcgtttcgaca 119  Q
    |||||||| ||||||||||||||||||| ||||||||||| |||||||||| |||||    
T  23299666 gtaaatccgcaagtgcacggtttaccgaagtagtaataaatgagtatcgttccgaca 23299610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 119
Target Start/End: Original strand, 12059077 - 12059138
Alignment:
Q  57 tgatgtcgtaaatccacaagtgcacggtttaccgatgtagtaataaagagtatcgtttcgaca 119  Q
    |||||| |||||||| |||||||||||||||||| ||||||||| ||| |||||||| |||||    
T  12059077 tgatgtagtaaatccgcaagtgcacggtttaccggtgtagtaat-aagtgtatcgttccgaca 12059138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 16069218 - 16069149
Alignment:
Q  64 gtaaatccacaagtgcacggtt-taccgatgtagtaataaa-gagtatcgtttcgacaagaagttatgaa 131  Q
    ||||| || ||||||||||||| |||||| ||||||||||| |||||||||| ||||| |||||||||||    
T  16069218 gtaaaaccgcaagtgcacggttctaccgaagtagtaataaaagagtatcgttccgacaggaagttatgaa 16069149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 171
Target Start/End: Original strand, 18379524 - 18379625
Alignment:
Q  73 caagtgcacggtt-taccgatgtagtaataaa-gagtatcgtttcgacaagaagttatgaagttgatca-cttttaataatgattagatgaaagtttcaa 169  Q
    |||||||| |||| ||||| ||||| |||||| |||||||||| ||||  | ||||||||| |  || | ||||||||||||||||||||||||||||||    
T  18379524 caagtgcatggttctaccggtgtagaaataaaagagtatcgttccgacgtggagttatgaattcaattaacttttaataatgattagatgaaagtttcaa 18379623  T
Q  170 ag 171  Q
    ||    
T  18379624 ag 18379625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 241
Target Start/End: Complemental strand, 21240784 - 21240675
Alignment:
Q  139 acttttaataatgattagat-gaaagtttcaaagg-taaaaag-ttggatttttgtttgattgaaaat---aataataataaaaa--caccttgggatta 230  Q
    ||||| |||||||||||| | |||||||||||||| ||||||| |||||||||||||| |  ||||||   ||||||||||||||  | |||||||||||    
T  21240784 actttaaataatgattagtttgaaagtttcaaaggttaaaaagtttggatttttgtttta-agaaaataacaataataataaaaaggcgccttgggatta 21240686  T
Q  231 ttggttcatct 241  Q
    |||||||||||    
T  21240685 ttggttcatct 21240675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 25404378 - 25404435
Alignment:
Q  57 tgatgtcgtaaatccacaagtgcacggtttaccgatgtagtaat-aaagagtatcgtt 113  Q
    |||||| ||||||||  ||||||||| ||||||||||||||||| |||||||||||||    
T  25404378 tgatgtagtaaatccgaaagtgcacgatttaccgatgtagtaataaaagagtatcgtt 25404435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 113
Target Start/End: Original strand, 16147737 - 16147801
Alignment:
Q  50 agaggagtgatgtcgtaaatccacaagtgcacggtttaccgatgtagtaataa-agagtatcgtt 113  Q
    |||||| |||||| |||||| | |||||| || |||||||||||||||||||| |||||||||||    
T  16147737 agaggattgatgtagtaaattcgcaagtgtacagtttaccgatgtagtaataagagagtatcgtt 16147801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 166
Target Start/End: Complemental strand, 20413044 - 20412941
Alignment:
Q  64 gtaaatccacaagtgcacggttt-accgatgtagtaataaagagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattagatgaa 161  Q
    ||||| || |||||||||||||| ||||| ||||||| ||||||||||||| ||||| | ||||||||| |  | | ||||| ||||||||||||||||     
T  20413044 gtaaaaccgcaagtgcacggttttaccgaagtagtaa-aaagagtatcgttccgacagggagttatgaattcaattaactttaaataatgattagatgag 20412946  T
Q  162 agttt 166  Q
    |||||    
T  20412945 agttt 20412941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 131
Target Start/End: Complemental strand, 28208674 - 28208614
Alignment:
Q  73 caagtgcacggtt-taccgatgtagtaataaa-gagtatcgtttcgacaagaagttatgaa 131  Q
    ||||||||||||| |||||| ||||||||||| |||||||||||||||| | |||||||||    
T  28208674 caagtgcacggttctaccgaagtagtaataaaagagtatcgtttcgacagggagttatgaa 28208614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 165
Target Start/End: Original strand, 20150263 - 20150366
Alignment:
Q  64 gtaaatccacaagtgcacggtttaccgatgtagtaataaagag-tatcgtttcgacaagaagttatgaagttgatca-cttttaataatgattagatgaa 161  Q
    ||||||||  |||||||||||||||| ||||||||||||| || ||||||| ||||  | ||||||||| |  || | ||||||| |||||||||||||     
T  20150263 gtaaatcctgaagtgcacggtttaccaatgtagtaataaaaagatatcgttccgactgggagttatgaattcaattatcttttaacaatgattagatgag 20150362  T
Q  162 agtt 165  Q
    ||||    
T  20150363 agtt 20150366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 119
Target Start/End: Complemental strand, 20400399 - 20400352
Alignment:
Q  73 caagtgcacggt-ttaccgatgtagtaataaagagtatcgtttcgaca 119  Q
    |||||||||||| ||||||| ||||||||||||||||||||| |||||    
T  20400399 caagtgcacggtcttaccgaagtagtaataaagagtatcgttccgaca 20400352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 103
Target Start/End: Complemental strand, 26195016 - 26194977
Alignment:
Q  64 gtaaatccacaagtgcacggtttaccgatgtagtaataaa 103  Q
    |||||||  |||||||||||||||||||||||||||||||    
T  26195016 gtaaatctgcaagtgcacggtttaccgatgtagtaataaa 26194977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 191
Target Start/End: Original strand, 28205636 - 28205756
Alignment:
Q  73 caagtgcacggt-ttaccgatgtagtaataaagagtatcgtttcgacaagaagttatgaagttgatca-cttttaataatgattag-atgaaagtttcaa 169  Q
    |||||||||||| ||||||| ||||||||||| ||||||||| ||| | | ||||||||| |  || | ||||||||||||||||| || ||||||| ||    
T  28205636 caagtgcacggtcttaccgaagtagtaataaa-agtatcgttccgatagggagttatgaattcaattatcttttaataatgattagaattaaagtttaaa 28205734  T
Q  170 aggtaaaaagttggatttttgt 191  Q
    || |  ||||||| ||||||||    
T  28205735 agattgaaagttgtatttttgt 28205756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 113
Target Start/End: Complemental strand, 16354862 - 16354822
Alignment:
Q  73 caagtgcacggtttaccgatgtagtaataaagagtatcgtt 113  Q
    ||||| ||||||||||||| ||||||| |||||||||||||    
T  16354862 caagttcacggtttaccgaagtagtaaaaaagagtatcgtt 16354822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 166
Target Start/End: Complemental strand, 17717547 - 17717451
Alignment:
Q  73 caagtgcacggtt-taccgatgtagtaataa-agagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattagatgaaagttt 166  Q
    ||||||||| ||| |||||| ||||||| || ||||||||||| ||||||| ||||||||| |  | | ||||| |||||||||||||||| |||||    
T  17717547 caagtgcacagttctaccgaagtagtaaaaagagagtatcgttccgacaaggagttatgaattcaattaactttaaataatgattagatgagagttt 17717451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 73 - 211
Target Start/End: Original strand, 11871 - 12012
Alignment:
Q  73 caagtgcacggtt-taccgatgtagtaataaa-gagtatcgtttcgacaagaagttatgaagt-tgatcacttttaataatgattagatgaaagtttcaa 169  Q
    ||||||||||||| ||||| |||||||||||| |||||||||| ||||||| ||||||||| |  | | |||||||| |||||||||||||||| ||  |    
T  11871 caagtgcacggttctaccggtgtagtaataaaagagtatcgttccgacaaggagttatgaattcagttaacttttaaaaatgattagatgaaaggttaga 11970  T
Q  170 aggtaaaaagttggatttttgtttgattgaaaataataataa 211  Q
    ||||| ||||||| |||||||||| |  |||||||| |||||    
T  11971 aggtagaaagttgtatttttgtttaaaagaaaataacaataa 12012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 73 - 211
Target Start/End: Original strand, 18063 - 18204
Alignment:
Q  73 caagtgcacggtt-taccgatgtagtaataaa-gagtatcgtttcgacaagaagttatgaagt-tgatcacttttaataatgattagatgaaagtttcaa 169  Q
    ||||||||||||| ||||| |||||||||||| |||||||||| ||||||| ||||||||| |  | | |||||||| |||||||||||||||| ||  |    
T  18063 caagtgcacggttctaccggtgtagtaataaaagagtatcgttccgacaaggagttatgaattcagttaacttttaaaaatgattagatgaaaggttaga 18162  T
Q  170 aggtaaaaagttggatttttgtttgattgaaaataataataa 211  Q
    ||||| ||||||| |||||||||| |  |||||||| |||||    
T  18163 aggtagaaagttgtatttttgtttaaaagaaaataacaataa 18204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 189
Target Start/End: Original strand, 24554 - 24670
Alignment:
Q  77 tgcacggtt-taccgatgtagtaataaa-gagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattagatgaaagtttcaaaggt 173  Q
    ||||||||| ||||| |||||||||||| |||||||||| ||||| | ||||||||| |  | | |||||||||||||||||||||||||||||||||||    
T  24554 tgcacggttctaccggtgtagtaataaaagagtatcgttccgacagggagttatgaattcaattaacttttaataatgattagatgaaagtttcaaaggt 24653  T
Q  174 aaaaagtt-ggattttt 189  Q
     ||||||| ||||||||    
T  24654 taaaagttcggattttt 24670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 189
Target Start/End: Complemental strand, 53594 - 53475
Alignment:
Q  73 caagtgcacggtt-taccgatgta-gtaataaagagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattagatgaaagtttcaa 169  Q
    ||||||||||||| |||||||||| |||| ||||||||||||| ||||| | ||||||||| |  | | |||||||||||||||||||||||||||||||    
T  53594 caagtgcacggttctaccgatgtaagtaa-aaagagtatcgttccgacagggagttatgaattcaattaacttttaataatgattagatgaaagtttcaa 53496  T
Q  170 aggtaaaaag-ttggattttt 189  Q
    |||| ||||| ||||||||||    
T  53495 aggttaaaagtttggattttt 53475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 189
Target Start/End: Original strand, 13630 - 13750
Alignment:
Q  73 caagtgcacggt-ttaccgatgtagtaata-aagagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattagatgaaagtttcaa 169  Q
    |||||||||||| ||||||| ||||||| | |||||||||||| ||||| | ||||||||| |  | | |||||||||||||||||||||||||||||||    
T  13630 caagtgcacggtcttaccgaagtagtaaaataagagtatcgttccgacagggagttatgaattcaattaacttttaataatgattagatgaaagtttcaa 13729  T
Q  170 aggtaaaaag-ttggattttt 189  Q
    |||| ||||| ||||||||||    
T  13730 aggttaaaagtttggattttt 13750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 241
Target Start/End: Complemental strand, 100857 - 100813
Alignment:
Q  198 gaaaataataataataaaaaca-ccttgggattattggttcatct 241  Q
    ||||||||||| |||||||| | ||||||||||||||||||||||    
T  100857 gaaaataataaaaataaaaagagccttgggattattggttcatct 100813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0450 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 73 - 189
Target Start/End: Complemental strand, 213 - 93
Alignment:
Q  73 caagtgcacggt-ttaccgatgtagtaataaa-gagtatcgtttcgacaagaagttatgaagttgatca-cttttaataatgattagatgaaagtttcaa 169  Q
    |||||||||||| ||||||| ||||||| | | |||||||||| ||||| | ||||||||| |  || | ||||||||||||||||||||||||||||||    
T  213 caagtgcacggtcttaccgaagtagtaaaatatgagtatcgttccgacagggagttatgaattcaattaacttttaataatgattagatgaaagtttcaa 114  T
Q  170 aggtaaaaag-ttggattttt 189  Q
    |||| ||||| ||||||||||    
T  113 aggttaaaagtttggattttt 93  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0081 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 73 - 189
Target Start/End: Original strand, 51058 - 51178
Alignment:
Q  73 caagtgcacggt-ttaccgatgtagtaata-aagagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattagatgaaagtttcaa 169  Q
    |||||||||||| ||||||| ||||||| | |||||||||||| ||||| | ||||||||| |  | | ||||| |||||||||||||||||||||||||    
T  51058 caagtgcacggtcttaccgaagtagtaaaataagagtatcgttccgacagggagttatgaattcaattaactttcaataatgattagatgaaagtttcaa 51157  T
Q  170 aggtaaaaag-ttggattttt 189  Q
    |||| ||||| ||||||||||    
T  51158 aggttaaaagtttggattttt 51178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 73 - 235
Target Start/End: Original strand, 8137 - 8300
Alignment:
Q  73 caagtgcacggtt-taccgatgtagtaataaagagtatcgtttcgacaagaagttatgaagttgatca-cttttaataatgattagatgaaagtttcaaa 170  Q
    ||||||||||||| |||||| ||| ||| ||||||||||||| ||||| ||||||||||| |  || | |||| |||||||||||||||||| |||||||    
T  8137 caagtgcacggttctaccgaagtaataa-aaagagtatcgttccgacaggaagttatgaattcaattagctttaaataatgattagatgaaaatttcaaa 8235  T
Q  171 gg-taaaaag-ttggatttttgtttgattgaaaataataataataaaaacaccttgggattattggt 235  Q
    || ||||||| ||||||||||  || |  ||||||||||| |||||||   | ||||||||||||||    
T  8236 ggttaaaaagtttggatttttaattaa--gaaaataataaaaataaaagagctttgggattattggt 8300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 65 - 208
Target Start/End: Complemental strand, 34784 - 34638
Alignment:
Q  65 taaatccacaagtgcacggtt-taccgatgtagtaata-aagagtatcgtttcgacaagaagttatgaagttgatcacttttaataatgattagat-gaa 161  Q
    ||||||| |||||| |||||| || ||| ||||||| | |||||||||||| ||||| | ||||||||| |   | ||||| |||||||||||||| |||    
T  34784 taaatccgcaagtgtacggttctatcgaagtagtaaaataagagtatcgttccgacagggagttatgaattaattaactttaaataatgattagattgaa 34685  T
Q  162 agtttcaaaggtaaaaagttggatttttgtttgattgaaaataataa 208  Q
    |||||  |||||||||||||| |||||||||| |  |||||||||||    
T  34684 agtttagaaggtaaaaagttgtatttttgtttaaaggaaaataataa 34638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 214
Target Start/End: Original strand, 5487 - 5562
Alignment:
Q  141 ttttaataatgattagatgaaagtttcaaaggt--aaaaagttggatttttgtttgattgaaaataataataataa 214  Q
    |||||||||||||||||||||||||||||||||  ||||| ||||||||||  || |  |||||||||||||||||    
T  5487 ttttaataatgattagatgaaagtttcaaaggttaaaaaatttggatttttaattaaaagaaaataataataataa 5562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 189
Target Start/End: Complemental strand, 16048 - 15928
Alignment:
Q  73 caagtgcacggt-ttaccgatgtagtaataaa-gagtatcgtttcgacaagaagttatgaagttgatca-cttttaataatgattagatgaaagtttcaa 169  Q
    |||||||||||| ||||||| ||||||| | | |||||||||| ||||| | ||||||||| |  || | |||| |||||||||||||||||||||||||    
T  16048 caagtgcacggtcttaccgaagtagtaaaatatgagtatcgttccgacagggagttatgaattcaattaactttcaataatgattagatgaaagtttcaa 15949  T
Q  170 aggtaaaaag-ttggattttt 189  Q
    |||| ||||| ||||||||||    
T  15948 aggttaaaagtttggattttt 15928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 22370 - 22316
Alignment:
Q  64 gtaaatccacaagtgcacggtttaccgatgtagtaataaagagtatcgtttcgaca 119  Q
    ||||||||| ||||||||||||||||| ||||||||| ||||||||| || |||||    
T  22370 gtaaatccataagtgcacggtttaccggtgtagtaat-aagagtatcattccgaca 22316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 189
Target Start/End: Complemental strand, 21255 - 21135
Alignment:
Q  73 caagtgcacggtt-taccgatgtagtaataaa-gagtatcgtttcgacaagaagttatgaagttgatca-cttttaataatgattagatgaaagtttcaa 169  Q
    ||||||||||||| ||||  |||||||||||| |||||||||| |||||   ||||||||| |  || | ||||||||||| ||||||||||||||||||    
T  21255 caagtgcacggttctaccagtgtagtaataaaagagtatcgttccgacagagagttatgaattcaattaacttttaataataattagatgaaagtttcaa 21156  T
Q  170 aggtaaaaag-ttggattttt 189  Q
    |||| ||||| ||||||||||    
T  21155 aggttaaaagtttggattttt 21135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 189
Target Start/End: Original strand, 27658 - 27709
Alignment:
Q  139 acttttaataatgattagatgaaagtttcaaaggtaaaaag-ttggattttt 189  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  27658 acttttaataatgattagatgaaagtttcaaaggttaaaagtttggattttt 27709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 57 - 127
Target Start/End: Complemental strand, 33670 - 33599
Alignment:
Q  57 tgatgtcgtaaatccacaagtgcacggtttaccgatgtagtaat-aaagagtatcgtttcgacaagaagtta 127  Q
    |||||| |||||||| |||||||| ||||||||||||||||||| ||||| ||||||| ||||||| |||||    
T  33670 tgatgtagtaaatccgcaagtgcatggtttaccgatgtagtaataaaagattatcgttccgacaaggagtta 33599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 57 - 127
Target Start/End: Complemental strand, 38977 - 38906
Alignment:
Q  57 tgatgtcgtaaatccacaagtgcacggtttaccgatgtagtaat-aaagagtatcgtttcgacaagaagtta 127  Q
    |||||| |||||||| |||||||| ||||||||||||||||||| ||||| ||||||| ||||||| |||||    
T  38977 tgatgtagtaaatccgcaagtgcatggtttaccgatgtagtaataaaagattatcgttccgacaaggagtta 38906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 81914 - 81982
Alignment:
Q  64 gtaaatccacaagtgcacggtttaccgatgtagtaat-aaagagtatcgtttcgacaagaagttatgaa 131  Q
    |||||||| |||||||||||||||| || |||||||| ||||||||||||| ||||| | |||||||||    
T  81914 gtaaatcctcaagtgcacggtttactgaagtagtaataaaagagtatcgttccgacagggagttatgaa 81982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 189
Target Start/End: Original strand, 181986 - 182104
Alignment:
Q  73 caagtgcacggtt-taccgatgtagtaataaagagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattagatgaaagtttcaaa 170  Q
    ||||||||||||| || ||| ||||||| ||||||||||||| ||||| | ||||||||| |  | | |||||||||||||| || ||||||||||||||    
T  181986 caagtgcacggttctatcgaagtagtaa-aaagagtatcgttccgacagggagttatgaattcaattaacttttaataatgaatatatgaaagtttcaaa 182084  T
Q  171 ggtaaaaag-ttggattttt 189  Q
    | | ||||| ||||||||||    
T  182085 gattaaaagtttggattttt 182104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 168
Target Start/End: Complemental strand, 14865 - 14760
Alignment:
Q  64 gtaaatccacaagtgcacggtttaccgatgtagtaataaagagtatcgtttcgacaagaagttatgaagttgatc-acttttaataatgattagatgaaa 162  Q
    |||||||||||||||||| |||||  || |||| |||||||||||||||| ||||| | ||||||||| || ||| |||| ||  |||||||||| || |    
T  14865 gtaaatccacaagtgcacagtttagagaagtagcaataaagagtatcgttccgacagggagttatgaatttaatcaacttctatgaatgattagaagaga 14766  T
Q  163 gtttca 168  Q
    ||||||    
T  14765 gtttca 14760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 214
Target Start/End: Complemental strand, 24066 - 23913
Alignment:
Q  65 taaatccacaagtgcacggtt-taccgatgtagtaataa-agagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattaga-tga 160  Q
    |||| |||||||||||||||| || ||| ||||||| || ||| ||||||| ||||| | ||||||||| |  | | ||||| ||||||||||||| |||    
T  24066 taaaaccacaagtgcacggttctatcgaagtagtaacaatagattatcgttccgacagggagttatgaactcaattaactttaaataatgattagattga 23967  T
Q  161 aagtttcaaaggtaaaaagttggatttttgtttgattgaaaataataataataa 214  Q
    ||||||  |||||| ||||||| |||||||||| |  |||||||| ||||||||    
T  23966 aagtttataaggtagaaagttgtatttttgtttaaaagaaaataacaataataa 23913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 216
Target Start/End: Complemental strand, 78573 - 78491
Alignment:
Q  139 acttttaataatgattaga-tgaaagtttcaaaggtaaaaagttggatttttgtttgatt----gaaaataataataataaaa 216  Q
    |||||||| |||||||||| ||||||||| ||||||| ||||||| |||||||||| |||    |||||||| ||||||||||    
T  78573 acttttaacaatgattagattgaaagtttaaaaggtagaaagttgtatttttgtttaattaaaagaaaataacaataataaaa 78491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 163
Target Start/End: Complemental strand, 17352 - 17259
Alignment:
Q  73 caagtgcacggtt-taccgatgtagtaataa-agagtatcgtttcgacaagaagttatgaagttgatca-cttttaataatgattagatgaaag 163  Q
    ||||||||||||| || ||| ||||||| || ||||||||||| ||||| | ||||||||| || || | |||||||| |||||||||||||||    
T  17352 caagtgcacggttctatcgaagtagtaaaaatagagtatcgttccgacagggagttatgaatttaattaacttttaatgatgattagatgaaag 17259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 191
Target Start/End: Original strand, 120311 - 120439
Alignment:
Q  65 taaatccacaagtgcacggt-ttaccgatgtagtaataaagagtatcgtttcgacaagaagttatgaagttgatca-cttttaataatgattag-atgaa 161  Q
    |||| ||||||||||||||| ||||||| ||||||||||| ||||||||||||||| | ||||||||| |  || | ||||||| ||||||||| || ||    
T  120311 taaaaccacaagtgcacggtcttaccgaagtagtaataaa-agtatcgtttcgacagggagttatgaattcaattatcttttaacaatgattagaattaa 120409  T
Q  162 agtttcaaaggtaaaaagttggatttttgt 191  Q
    ||||| |||| |  ||||||| ||||||||    
T  120410 agtttaaaagattgaaagttgtatttttgt 120439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 100
Target Start/End: Original strand, 22032 - 22075
Alignment:
Q  57 tgatgtcgtaaatccacaagtgcacggtttaccgatgtagtaat 100  Q
    |||||| |||||||| ||||||||||||||||||||||||||||    
T  22032 tgatgtagtaaatccgcaagtgcacggtttaccgatgtagtaat 22075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 64 - 216
Target Start/End: Original strand, 5999 - 6157
Alignment:
Q  64 gtaaatccacaagtgcacggtt-taccgatgtagtaataaagagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattaga-tga 160  Q
    ||||| || ||||||||||||| || ||| ||| ||| ||||||||||||| ||||| | ||||||||| |  | | |||||||| |||||||||| |||    
T  5999 gtaaaaccgcaagtgcacggttctatcgaagtaataa-aaagagtatcgttccgacagggagttatgaattcaattaacttttaacaatgattagattga 6097  T
Q  161 aagtttcaaaggtaaaaagttggatttttgtttgatt----gaaaataataataataaaa 216  Q
    ||||||  |||||| ||||||| |||||||||| |||    |||||||| ||||||||||    
T  6098 aagtttagaaggtagaaagttgtatttttgtttaattaaaagaaaataacaataataaaa 6157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 119
Target Start/End: Complemental strand, 18373 - 18327
Alignment:
Q  73 caagtgcacggtttaccgatgtagtaataaagagtatcgtttcgaca 119  Q
    ||||||||| ||||| | |||||||||||||||||||||||||||||    
T  18373 caagtgcacagtttatctatgtagtaataaagagtatcgtttcgaca 18327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0443 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0443
Description:

Target: scaffold0443; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 3795 - 3836
Alignment:
Q  59 atgtcgtaaatccacaagtgcacggtttaccgatgtagtaat 100  Q
    |||| |||||||| ||||||||||||||||||||||||||||    
T  3795 atgtagtaaatccgcaagtgcacggtttaccgatgtagtaat 3836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1710 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1710
Description:

Target: scaffold1710; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 119
Target Start/End: Complemental strand, 61 - 14
Alignment:
Q  73 caagtgcacggt-ttaccgatgtagtaataaagagtatcgtttcgaca 119  Q
    |||||||||||| ||||||| ||||||||||||||||||||| |||||    
T  61 caagtgcacggtcttaccgaagtagtaataaagagtatcgttccgaca 14  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 189
Target Start/End: Original strand, 37321 - 37440
Alignment:
Q  73 caagtgcacggtt-taccgatgtagtaataa-agagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattagatgaaagtttcaa 169  Q
    ||||||||||||| || ||| ||||||| || ||||||||||| |||||   ||||||||| |  | | ||||||||||||||||||||||||||||  |    
T  37321 caagtgcacggttctatcgaagtagtaaaaatagagtatcgttccgacagagagttatgaattcaaataacttttaataatgattagatgaaagtttaga 37420  T
Q  170 aggtaaaaagttggattttt 189  Q
    | | | ||||||||||||||    
T  37421 acgcagaaagttggattttt 37440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0855 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0855
Description:

Target: scaffold0855; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 4123 - 4077
Alignment:
Q  194 gattgaaaataataataataaaaa-caccttgggattattggttcat 239  Q
    |||||||||||||||||||||||| | | ||||||||||||||||||    
T  4123 gattgaaaataataataataaaaagcgcattgggattattggttcat 4077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0847 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0847
Description:

Target: scaffold0847; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 4288 - 4242
Alignment:
Q  194 gattgaaaataataataataaaaa-caccttgggattattggttcat 239  Q
    |||||||||||||||||||||||| | | ||||||||||||||||||    
T  4288 gattgaaaataataataataaaaagcgcattgggattattggttcat 4242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0841 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0841
Description:

Target: scaffold0841; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 126
Target Start/End: Original strand, 2845 - 2901
Alignment:
Q  73 caagtgcacggt-ttaccgatgtagtaat--aaagagtatcgtttcgacaagaagtt 126  Q
    |||||||||||| ||||||| ||||||||  ||||||||||||| ||||||||||||    
T  2845 caagtgcacggtcttaccgaagtagtaatgaaaagagtatcgttccgacaagaagtt 2901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 214
Target Start/End: Complemental strand, 49590 - 49445
Alignment:
Q  73 caagtgcacggtt-taccgatgtagtaataaa-gagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattaga-tgaaagtttca 168  Q
    ||||||||| ||| ||||| |||||||||||| |||||||||| ||||| | ||||||||| |  | | |||||||  |||||||||| ||||| |||      
T  49590 caagtgcacagttctaccggtgtagtaataaaagagtatcgttccgacagggagttatgaattcaattaacttttagaaatgattagattgaaattttag 49491  T
Q  169 aaggtaaaaagttggatttttgtttgattgaaaataataataataa 214  Q
    |||| | ||||||| |||||||||| |  |||||||| ||||||||    
T  49490 aagggagaaagttgtatttttgtttaaaagaaaataacaataataa 49445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 163
Target Start/End: Original strand, 94143 - 94236
Alignment:
Q  73 caagtgcacggt-ttaccgatgtagtaata-aagagtatcgtttcgacaagaagttatgaagttga-tcacttttaataatgattagatgaaag 163  Q
    |||||||||||| ||||||| ||||||| | |||||||||||| ||||| | ||||||||| |  | | ||||||||| |||||||||||||||    
T  94143 caagtgcacggtcttaccgaagtagtaaaataagagtatcgttccgacagggagttatgaattcaattaacttttaatgatgattagatgaaag 94236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0375 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0375
Description:

Target: scaffold0375; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 131
Target Start/End: Complemental strand, 14223 - 14163
Alignment:
Q  73 caagtgcacggtt-taccgatgtagtaataaa-gagtatcgtttcgacaagaagttatgaa 131  Q
    |||||||||| || |||||||||||||||||| |||||||||| ||||| | |||||||||    
T  14223 caagtgcacgattctaccgatgtagtaataaaagagtatcgttccgacagggagttatgaa 14163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 21735 - 21791
Alignment:
Q  64 gtaaatccacaagtgcacggtttaccgatgtagtaat-aaagagtatcgtttcgaca 119  Q
    ||||| || ||||||||||  ||||||| |||||||| |||||||||||||||||||    
T  21735 gtaaaaccgcaagtgcacgacttaccgaagtagtaataaaagagtatcgtttcgaca 21791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 21874 - 21914
Alignment:
Q  201 aataataataataaaaacaccttgggattattggttcatct 241  Q
    |||||||| ||||||| ||| ||||||||||||||||||||    
T  21874 aataataaaaataaaagcacattgggattattggttcatct 21914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University