View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10596_high_1 (Length: 438)
Name: NF10596_high_1
Description: NF10596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10596_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 17 - 422
Target Start/End: Complemental strand, 25221763 - 25221355
Alignment:
| Q |
17 |
atgaatataaataaacaattcaatccatataaaatgagctgaattaactaagtaattgagctcaagtagttaacgagtttcatcaatgacgaattgtttc |
116 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25221763 |
atgaatataaataaacaattcaatccatataaaatgagctgaattaactaa-taattgagctcaagtagttaacgagtttcatcaatgacgaattgtttc |
25221665 |
T |
|
| Q |
117 |
gcaaaacctcaccttgattcttgatggaacaatttttagtcaaactttacttacctctgaccaaactttgaaataccgggttccccnnnnnnnn--agag |
214 |
Q |
| |
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| | || ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
25221664 |
gaagaatctcactttgattcttgatggaacagtttttagtcaaactttacttacctctgaccaagctttgaaataccgggttccccttttttttttagag |
25221565 |
T |
|
| Q |
215 |
ctagagggttnnnnnnnc--ctgaattttggagaaaattgaaattactatcatacttcatagttaattagatatcattgtaacgactatatacttatatc |
312 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25221564 |
ctagagggttaaaaaaaaaactgaattttggagaaaattgaaattactatcatacttcatagttaattagatatcattgtaacgactatatacttatatc |
25221465 |
T |
|
| Q |
313 |
aatttatttgttaatcgtgcagcttgtgtcaaatgacaatttcagtagtgtttatcatcgggtactatcaaatcataaaggcccaagagtttctgtagct |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25221464 |
aatttatttgttaatcgtgcagcttgtgtcaaatgacaatttcagtagtgtttatcatcgggtactatcaaatcataaaggcccaagagtttctgtagct |
25221365 |
T |
|
| Q |
413 |
gccttctttg |
422 |
Q |
| |
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|||||||||| |
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|
| T |
25221364 |
gccttctttg |
25221355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 21 - 422
Target Start/End: Original strand, 26172687 - 26173091
Alignment:
| Q |
21 |
atataaataaacaattcaatccatataaaatgagctgaattaactaagtaattgagctcaagtagttaacgagtttcatcaatgacgaattgtttcgcaa |
120 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||| ||||||| ||||||||||| |||||| ||||| ||||||||||||||| ||||| ||| | | |
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|
| T |
26172687 |
atataaatatacaattcaatctatataaaatgagctaaattaaccaagtaattgagttcaagtggttaatgagtttcatcaatgatgaattattttggat |
26172786 |
T |
|
| Q |
121 |
aacctcaccttgattcttgatggaacaatttttagtcaaactttacttacctctgaccaaactttgaaataccgggttccccnnnnnnnnagagctagag |
220 |
Q |
| |
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|| || || |||||| ||||| |||||||||||||||| |||| | ||||||||||||||||| ||||||| || |||| ||| |||||| |
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| T |
26172787 |
aatctgactttgatttttgatagaacaatttttagtcatacttcatttacctctgaccaaactcaaaaataccagggtccctttttctttagaactagag |
26172886 |
T |
|
| Q |
221 |
ggttnnnnnnncctgaattttggagaaaat--tgaaattactatcatacttcatagttaattagatatcattgtaacgactatatacttatatcaattta |
318 |
Q |
| |
|
|||| |||||||| | |||| |||||||| | ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
26172887 |
ggttaaaaaaaaaagaattttgtataaaaaaatgaaattattgtcataattcatagttaattagatatcattgtaacgaatatatacttatatcaattta |
26172986 |
T |
|
| Q |
319 |
tttgttaatcgtg-cagcttgtgtcaaatgacaatttcagtagtgtttatcatcgggtactatcaaatcataaaggcccaagagtttctgtagctgcctt |
417 |
Q |
| |
|
|||||||||| | |||||| | |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26172987 |
tttgttaatctttacagcttatatcaaatgacaattttagtagtgtttatcatcgggtgttatcaaatcataaaggcccaagagtttctgtagctgcctt |
26173086 |
T |
|
| Q |
418 |
ctttg |
422 |
Q |
| |
|
||||| |
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|
| T |
26173087 |
ctttg |
26173091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 412
Target Start/End: Original strand, 26397484 - 26397630
Alignment:
| Q |
263 |
catacttcatagttaattagatatcattgtaacgactatatacttatatcaatttatttgttaatcgtgcagcttgtgtcaaatgacaatttcagtagtg |
362 |
Q |
| |
|
||||||||||||||| ||||| ||||||||| |||||||||||| ||||||||||| ||| | |||||| | ||||||||||||| |||| |
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| T |
26397484 |
catacttcatagttacgtagatgtcattgtaat---tatatacttatagaaatttatttgtcaatgttacagcttataacaaatgacaattttgtcagtg |
26397580 |
T |
|
| Q |
363 |
tttatcatcgggtactatcaaatcataaaggcccaagagtttctgtagct |
412 |
Q |
| |
|
||| |||||| || ||| || | ||||||| |||||||||||||||||| |
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|
| T |
26397581 |
tttttcatcgagtgttattaagtgataaaggaccaagagtttctgtagct |
26397630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 1908264 - 1908220
Alignment:
| Q |
71 |
attgagctcaagtagttaacgagtttcatcaatgacgaattgttt |
115 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||| ||||||||| |
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|
| T |
1908264 |
attgagctcaagtggttaacgaacttcatcaatgatgaattgttt |
1908220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 236 - 422
Target Start/End: Original strand, 8352760 - 8352947
Alignment:
| Q |
236 |
aattttggagaaaa-ttgaaattactatcatacttcatagttaattagatatcattgtaacgactatatacttatatcaatttatttgttaatcgtgcag |
334 |
Q |
| |
|
|||||||||||||| ||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||| |
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|
| T |
8352760 |
aattttggagaaaaattgaaattactgtcagacttcatagttaattagataacattgtaacgactatatacttatatcaatttatttgttaatcatacag |
8352859 |
T |
|
| Q |
335 |
cttgtgtcaaatgacaatttcagtagtgtttatcatcgggtactatcaaatcataaaggcccaagagtttctgtagctgccttctttg |
422 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8352860 |
cttgtatcaaatgacaatttcagtagtgtttatcatcgtgtgttatcaaatcataaaggcccaagagtttctgtagctgccttctttg |
8352947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 21 - 193
Target Start/End: Original strand, 8352537 - 8352710
Alignment:
| Q |
21 |
atataaataaacaattcaa-tccatataaaatgagctgaattaactaagtaattgagctcaagtagttaacgagtttcatcaatgacgaattgtttcgca |
119 |
Q |
| |
|
||||||| ||||||||||| ||||||| |||||||||||||| |||||||||||||||| ||||||||| ||| ||||||| ||||||||| | |
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|
| T |
8352537 |
atataaacaaacaattcaaatccatattctatgagctgaattaatatagtaattgagctcaagaggttaacgagcttctccaatgacaaattgtttcaga |
8352636 |
T |
|
| Q |
120 |
aaacctcaccttgattcttgatggaacaatttttagtcaaactttacttacctctgaccaaactttgaaatacc |
193 |
Q |
| |
|
||||| || || |||||||||||||||||||| ||| | |||||| ||||||||||||||||| ||||||||| |
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|
| T |
8352637 |
gaacctgactttaattcttgatggaacaattttcagttagactttatttacctctgaccaaactctgaaatacc |
8352710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 114
Target Start/End: Complemental strand, 21074804 - 21074751
Alignment:
| Q |
61 |
taactaagtaattgagctcaagtagttaacgagtttcatcaatgacgaattgtt |
114 |
Q |
| |
|
||||||| |||||||||||| ||||||||||| ||| ||||||| |||||||| |
|
|
| T |
21074804 |
taactaaacaattgagctcaattagttaacgaggttcgtcaatgaagaattgtt |
21074751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 115
Target Start/End: Original strand, 8509654 - 8509692
Alignment:
| Q |
77 |
ctcaagtagttaacgagtttcatcaatgacgaattgttt |
115 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
8509654 |
ctcaagtagttaatgagtttcatcaatgatgaattgttt |
8509692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 174
Target Start/End: Original strand, 5843640 - 5843673
Alignment:
| Q |
141 |
tggaacaatttttagtcaaactttacttacctct |
174 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |
|
|
| T |
5843640 |
tggaacaattttttgtcaaactttacttacctct |
5843673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 110
Target Start/End: Complemental strand, 13043553 - 13043504
Alignment:
| Q |
61 |
taactaagtaattgagctcaagtagttaacgagtttcatcaatgacgaat |
110 |
Q |
| |
|
|||| ||| |||||||||||||| ||||| |||||||||||| ||||||| |
|
|
| T |
13043553 |
taaccaagcaattgagctcaagtggttaatgagtttcatcaaggacgaat |
13043504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 114
Target Start/End: Complemental strand, 34605380 - 34605344
Alignment:
| Q |
78 |
tcaagtagttaacgagtttcatcaatgacgaattgtt |
114 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
34605380 |
tcaagtagttaacgaatttcatcaacgacgaattgtt |
34605344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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