View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10596_high_13 (Length: 255)
Name: NF10596_high_13
Description: NF10596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10596_high_13 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 82 - 255
Target Start/End: Original strand, 28939228 - 28939401
Alignment:
| Q |
82 |
gttgaggcctaagaagttactaggattattatttgtataaattttatggagaaattcaagtacatgttcatataaaaaatcatcgaactgaatcctccac |
181 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28939228 |
gttgaggcctgagaagttactaggattattatttgtataaattttatggagaaattcaagtacatgttcatataaaaaatcatcgaactgaatcctccat |
28939327 |
T |
|
| Q |
182 |
aatcaccactatggtgcacccgactatatactgttagattaaaagagagaaaaatcatctcataatctaacaat |
255 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
28939328 |
aatcaccactatggtgcacccgactatagactgttagattaaaagagaaaaaaatcatctcataatctaacaat |
28939401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 28939164 - 28939203
Alignment:
| Q |
15 |
caaagggtagcttagtgcatgagggttaaatacacatgca |
54 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28939164 |
caaagggtagcttagtgcatgagggttaaatacacatgca |
28939203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University