View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10596_high_18 (Length: 240)
Name: NF10596_high_18
Description: NF10596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10596_high_18 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 23 - 240
Target Start/End: Complemental strand, 28939653 - 28939436
Alignment:
| Q |
23 |
tatatagattctcatattcattttgaaatagttttctgtatgttggtctcttatgtatattttcaaaataattgagggataagaaaatttgtagtctttt |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28939653 |
tatatagattctcatattcattttgaaatagttttctgtatgttggtctcttatgtatattttcaaaataattgagggataagaaaatttgtagtctttt |
28939554 |
T |
|
| Q |
123 |
cggtcaaacatcggtcgttggattaatctaaaggctcgtgtttggccggagaggctgcggtgctacacaagatcgaaatcgccaagctgtttgtcttatt |
222 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
28939553 |
cggccaaacatcggtcgttggattaatctaaaggctcgtgtttggccggagaggctgcggtgctacacaagatcgaaatcgccaagctgttcgtcttatt |
28939454 |
T |
|
| Q |
223 |
ccaacaccttgagtgatt |
240 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
28939453 |
ccaacaccttgagtgatt |
28939436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University