View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10596_high_2 (Length: 437)

Name: NF10596_high_2
Description: NF10596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10596_high_2
NF10596_high_2
[»] chr4 (5 HSPs)
chr4 (1-430)||(25020991-25021417)
chr4 (348-419)||(26869421-26869492)
chr4 (317-385)||(38767116-38767184)
chr4 (258-304)||(3083392-3083437)
chr4 (351-407)||(20230253-20230309)
[»] chr7 (4 HSPs)
chr7 (315-430)||(32521560-32521675)
chr7 (251-306)||(4962474-4962529)
chr7 (258-304)||(39436803-39436849)
chr7 (251-301)||(44549234-44549284)
[»] chr6 (2 HSPs)
chr6 (251-303)||(33490701-33490753)
chr6 (340-418)||(11171995-11172073)
[»] chr3 (7 HSPs)
chr3 (251-301)||(21970178-21970228)
chr3 (251-301)||(21992614-21992664)
chr3 (324-406)||(44909926-44910008)
chr3 (251-304)||(22152391-22152444)
chr3 (262-304)||(25995174-25995216)
chr3 (251-304)||(5846373-5846426)
chr3 (252-304)||(30805778-30805830)
[»] chr8 (2 HSPs)
chr8 (251-303)||(1170635-1170687)
chr8 (276-304)||(15920182-15920210)
[»] chr1 (4 HSPs)
chr1 (251-294)||(8209322-8209365)
chr1 (251-304)||(4353618-4353671)
chr1 (251-304)||(11409119-11409171)
chr1 (251-303)||(48715753-48715805)
[»] chr2 (3 HSPs)
chr2 (258-304)||(38801846-38801892)
chr2 (251-288)||(360487-360524)
chr2 (251-303)||(17372542-17372594)


Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Complemental strand, 25021417 - 25020991
Alignment:
Q  1 attcctatatactcaacaacaaataaaaaacatgactccatgtcaaattaaggaatattcttggaatactctacaacatcaaaaagatatagtgtataca 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  25021417 attcctatatacgcaacaacaaataaaaaacatgactccatgtcaaattaaggaatattcttggaatactctacaacatcaaaaagatatactgtataca 25021318  T
Q  101 aactaagaacacaaacacgagaagaaagaatgtacaacttattttataaacttgagactcagagaaaaaataaggaggaacatgtacaagatttacaaaa 200  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  25021317 aactaaaaacacaaacaggagaagaaagaatgtacaacttattttataaacttgagactc--agaaaaaataaggaggaacatgtacaagatttacaaaa 25021220  T
Q  201 ggaactaaattatgctaacatttgtaaattatgaaccatannnnnnnnnnatgaaagtttaattttgattaaagatataaatataaatatttgtgacttt 300  Q
    ||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  25021219 ggaactaaattatgctaacatttgtaaattatgaaccata-tttttttttatgaaagtttaattttgattaaagatatgaatataaatatttgtgacttt 25021121  T
Q  301 caaaataatagggaccattgagcatgagttgttgttttcaaaagacaaagaatcaaaaccttaaataacttcgacttttcattttaatatcatatagatt 400  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  25021120 caaaataatagggaccattgagcatgagttgttgtttccaaaagacaaagaatcaaaaccttaaataacttcgacttttctttttaatatcatatagatt 25021021  T
Q  401 attgaaaagaaatatttaacttctctgctt 430  Q
     ||||||||||||||||||||| |||||||    
T  25021020 gttgaaaagaaatatttaacttttctgctt 25020991  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 348 - 419
Target Start/End: Complemental strand, 26869492 - 26869421
Alignment:
Q  348 aagaatcaaaaccttaaataacttcgacttttcattttaatatcatatagattattgaaaagaaatatttaa 419  Q
    ||||||||||||||||||||| || ||||| | ||||| |||||| ||||||| ||||||  ||||||||||    
T  26869492 aagaatcaaaaccttaaataattttgacttcttattttcatatcagatagattgttgaaagaaaatatttaa 26869421  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 385
Target Start/End: Original strand, 38767116 - 38767184
Alignment:
Q  317 attgagcatgagttgttgttttcaaaagacaaagaatcaaaaccttaaataacttcgacttttcatttt 385  Q
    |||||||||||||| ||| |||| ||||||||  |||||||||||||||||| || || || |||||||    
T  38767116 attgagcatgagttattgctttctaaagacaataaatcaaaaccttaaataattttgatttctcatttt 38767184  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 304
Target Start/End: Complemental strand, 3083437 - 3083392
Alignment:
Q  258 tttaattttgattaaagatataaatataaatatttgtgactttcaaa 304  Q
    |||||||||||||||| |||||| || ||||||||||||||||||||    
T  3083437 tttaattttgattaaa-atataagtacaaatatttgtgactttcaaa 3083392  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 407
Target Start/End: Complemental strand, 20230309 - 20230253
Alignment:
Q  351 aatcaaaaccttaaataacttcgacttttcattttaatatcatatagattattgaaa 407  Q
    |||||||||||||||||| || ||||| |||||||  ||||| ||||||| ||||||    
T  20230309 aatcaaaaccttaaataattttgacttctcattttcgtatcagatagattgttgaaa 20230253  T

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Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 315 - 430
Target Start/End: Complemental strand, 32521675 - 32521560
Alignment:
Q  315 ccattgagcatgagttgttgttttcaaaagacaaagaatcaaaaccttaaataacttcgacttttcattttaatatcatatagattattgaaaagaaata 414  Q
    ||||||||||| |||| ||  ||||||||||||| ||||  ||||||||||||| || ||||| ||||||| | |||| ||||| || ||||| ||||||    
T  32521675 ccattgagcataagttattactttcaaaagacaaggaattgaaaccttaaataattttgacttctcatttttaaatcaaatagactaatgaaaggaaata 32521576  T
Q  415 tttaacttctctgctt 430  Q
    ||||| || |||||||    
T  32521575 tttaaattatctgctt 32521560  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 251 - 306
Target Start/End: Complemental strand, 4962529 - 4962474
Alignment:
Q  251 atgaaagtttaattttgattaaagatataaatataaatatttgtgactttcaaaat 306  Q
    |||||| ||| ||||||||||||  |||||||||||||| ||||||||||||||||    
T  4962529 atgaaattttgattttgattaaaactataaatataaatacttgtgactttcaaaat 4962474  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 304
Target Start/End: Original strand, 39436803 - 39436849
Alignment:
Q  258 tttaattttgattaaagatataaatataaatatttgtgactttcaaa 304  Q
    |||||| |||||||||  ||||||||||||||||||||| |||||||    
T  39436803 tttaatattgattaaaattataaatataaatatttgtgattttcaaa 39436849  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 301
Target Start/End: Original strand, 44549234 - 44549284
Alignment:
Q  251 atgaaagtttaattttgattaaagatataaatataaatatttgtgactttc 301  Q
    |||||| ||||||||||||||||  ||||| |||||||||||| |||||||    
T  44549234 atgaaattttaattttgattaaaattataagtataaatatttgcgactttc 44549284  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 251 - 303
Target Start/End: Complemental strand, 33490753 - 33490701
Alignment:
Q  251 atgaaagtttaattttgattaaagatataaatataaatatttgtgactttcaa 303  Q
    |||||| |||||||||||||||| |||||||||||||||||||||| ||||||    
T  33490753 atgaaattttaattttgattaaaaatataaatataaatatttgtgattttcaa 33490701  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 418
Target Start/End: Original strand, 11171995 - 11172073
Alignment:
Q  340 aaaagacaaagaatcaaaaccttaaataacttcgacttttcattttaatatcatatagattattgaaaagaaatattta 418  Q
    |||| |||||||| |||||| || |||||  |  |||| | ||||| |||||| |||||||||||||||||||||||||    
T  11171995 aaaaaacaaagaaccaaaactttcaataatctttacttctaattttcatatcagatagattattgaaaagaaatattta 11172073  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 251 - 301
Target Start/End: Complemental strand, 21970228 - 21970178
Alignment:
Q  251 atgaaagtttaattttgattaaagatataaatataaatatttgtgactttc 301  Q
    |||||| |||||||||||||||| |||||||||||||| ||||||||||||    
T  21970228 atgaaattttaattttgattaaaaatataaatataaatgtttgtgactttc 21970178  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 251 - 301
Target Start/End: Complemental strand, 21992664 - 21992614
Alignment:
Q  251 atgaaagtttaattttgattaaagatataaatataaatatttgtgactttc 301  Q
    |||||| |||||||||||||||| |||||||||||||| ||||||||||||    
T  21992664 atgaaattttaattttgattaaaaatataaatataaatgtttgtgactttc 21992614  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 406
Target Start/End: Complemental strand, 44910008 - 44909926
Alignment:
Q  324 atgagttgttgttttcaaaagacaaagaatcaaaaccttaaataacttcgacttttcattttaatatcatatagattattgaa 406  Q
    ||||||| ||| || | ||||||||| ||||||||  |||||||| || ||||||||||||| |||| | |||||||||||||    
T  44910008 atgagttattgcttgcgaaagacaaataatcaaaattttaaataattttgacttttcattttcatatgagatagattattgaa 44909926  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 251 - 304
Target Start/End: Complemental strand, 22152444 - 22152391
Alignment:
Q  251 atgaaagtttaattttgattaaagatataaatataaatatttgtgactttcaaa 304  Q
    |||||| |||||||||||||||| ||| |||||||||| ||||| |||||||||    
T  22152444 atgaaattttaattttgattaaaaataaaaatataaatgtttgttactttcaaa 22152391  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 304
Target Start/End: Original strand, 25995174 - 25995216
Alignment:
Q  262 attttgattaaagatataaatataaatatttgtgactttcaaa 304  Q
    |||||||||||| |||||||||||||||||| | |||||||||    
T  25995174 attttgattaaaaatataaatataaatattttttactttcaaa 25995216  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 304
Target Start/End: Complemental strand, 5846426 - 5846373
Alignment:
Q  251 atgaaagtttaattttgattaaagatataaatataaatatttgtgactttcaaa 304  Q
    |||||| ||| ||||||||||||  || || |||||||||||||||||||||||    
T  5846426 atgaaattttgattttgattaaaattacaagtataaatatttgtgactttcaaa 5846373  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 30805778 - 30805830
Alignment:
Q  252 tgaaagtttaattttgattaaagatataaatataaatatttgtgactttcaaa 304  Q
    ||||| ||||||||||||||||  || |||||||||| ||||| |||||||||    
T  30805778 tgaaattttaattttgattaaaactaaaaatataaatgtttgttactttcaaa 30805830  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 303
Target Start/End: Complemental strand, 1170687 - 1170635
Alignment:
Q  251 atgaaagtttaattttgattaaagatataaatataaatatttgtgactttcaa 303  Q
    |||||| ||| |||||||||||| |||||||||||||||||||| ||||||||    
T  1170687 atgaaatttttattttgattaaaaatataaatataaatatttgttactttcaa 1170635  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 304
Target Start/End: Complemental strand, 15920210 - 15920182
Alignment:
Q  276 tataaatataaatatttgtgactttcaaa 304  Q
    |||||||||||||||||||||||||||||    
T  15920210 tataaatataaatatttgtgactttcaaa 15920182  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 294
Target Start/End: Original strand, 8209322 - 8209365
Alignment:
Q  251 atgaaagtttaattttgattaaagatataaatataaatatttgt 294  Q
    |||||| ||| ||||||||||||||||||||||||||| |||||    
T  8209322 atgaaattttgattttgattaaagatataaatataaatgtttgt 8209365  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 304
Target Start/End: Original strand, 4353618 - 4353671
Alignment:
Q  251 atgaaagtttaattttgattaaagatataaatataaatatttgtgactttcaaa 304  Q
    |||||| ||||||||| ||||||  ||||  |||||||||||||||||||||||    
T  4353618 atgaaattttaatttttattaaaattatatgtataaatatttgtgactttcaaa 4353671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 304
Target Start/End: Complemental strand, 11409171 - 11409119
Alignment:
Q  251 atgaaagtttaattttgattaaagatataaatataaatatttgtgactttcaaa 304  Q
    |||||| ||||||||||||||||| || |||||||||| ||||| |||||||||    
T  11409171 atgaaattttaattttgattaaag-taaaaatataaatgtttgttactttcaaa 11409119  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 303
Target Start/End: Original strand, 48715753 - 48715805
Alignment:
Q  251 atgaaagtttaattttgattaaagatataaatataaatatttgtgactttcaa 303  Q
    |||||| ||| |||| ||||||| |||||||||||||| ||||| ||||||||    
T  48715753 atgaaattttgatttggattaaaaatataaatataaatgtttgttactttcaa 48715805  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 304
Target Start/End: Complemental strand, 38801892 - 38801846
Alignment:
Q  258 tttaattttgattaaagatataaatataaatatttgtgactttcaaa 304  Q
    ||||||||| |||||| |||||||||||||||||  |||||||||||    
T  38801892 tttaattttaattaaaaatataaatataaatattaatgactttcaaa 38801846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 288
Target Start/End: Complemental strand, 360524 - 360487
Alignment:
Q  251 atgaaagtttaattttgattaaagatataaatataaat 288  Q
    |||||| |||||||||||||||| ||||||||||||||    
T  360524 atgaaattttaattttgattaaaaatataaatataaat 360487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 303
Target Start/End: Complemental strand, 17372594 - 17372542
Alignment:
Q  251 atgaaagtttaattttgattaaagatataaatataaatatttgtgactttcaa 303  Q
    |||||| ||||||||||||||||  || ||||||||||||||||  |||||||    
T  17372594 atgaaattttaattttgattaaaactaaaaatataaatatttgttgctttcaa 17372542  T

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