View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10596_high_3 (Length: 416)
Name: NF10596_high_3
Description: NF10596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10596_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 123 - 319
Target Start/End: Original strand, 20463808 - 20464003
Alignment:
| Q |
123 |
tggtttatcttagaatagttgtaacgttgaaatggaaataagatgagtcaacatgatttcctaccaaacgtccaaaccaaaaagcatgttgttgatgtct |
222 |
Q |
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| T |
20463808 |
tggtttatcttagaatagttgtaacgttgaagtggaaataagatgagtcaacatgatttcctaccaaacgttcaaaccaaaa-gcatgttgttgatgtct |
20463906 |
T |
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| Q |
223 |
attttgtagcttttgagaaaacagtgcaattccattttagtacaattgatttggttctatttacagaaacaagaccaaaaagtggcatcgagatttt |
319 |
Q |
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| T |
20463907 |
attttgtagcttttgagaaaacagtgcaattccattttagtacaattgatttggttctatttacagaaacaagaccaaaaagtggcatcgagatttt |
20464003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 20463688 - 20463774
Alignment:
| Q |
18 |
gtatcttgaagtaacagtaacctgagagattaattgtggtggcaacttgtgagtggttttggcacacagaagagtgaacagtgaaga |
104 |
Q |
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| T |
20463688 |
gtatcttgaagtaacagtaacctgagagatgaattgtggtggcaacttgtgagtggttttggcacacagaagagtgaacagtgaaga |
20463774 |
T |
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